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@fbergmann fbergmann commented Sep 26, 2025

making sure COPASI works with v2 (and v1)


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@fbergmann fbergmann requested a review from JR-1991 September 26, 2025 16:01
fbergmann and others added 2 commits September 27, 2025 11:45
Added explicit encoding="utf-8" to file open calls in omex.py and test_legacy.py to ensure consistent file reading across different environments.
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JR-1991 commented Sep 27, 2025

@fbergmann thanks for this PR and great to have basico on board! I have added a small commit to fix the failing tests. Those were unrelated to your PR and merely encoding problems. Reviewing now :)

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I have left a small comment to a typing issue. Other than that, everything looks and works great. Thanks!

Updated the 'inits' attribute in the ThinLayerCopasi class from a list of InitMap to a dictionary mapping strings to InitMap. This change likely improves lookup efficiency and clarifies the intended data structure.
@JR-1991 JR-1991 merged commit 79be825 into main Sep 28, 2025
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@fbergmann fbergmann deleted the basico-v2-support branch September 28, 2025 07:34
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3 participants