Skip to content

feat: added Organicella extenuata and_Pinguicoccus supinus as using t… #3

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
donovan-h-parks merged 1 commit into from
Apr 9, 2026
Merged

feat: added Organicella extenuata and_Pinguicoccus supinus as using t… #3

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 2 additions & 0 deletions gtranslate/training/ground_truth_by_taxonomy.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -59,7 +59,9 @@ def __init__(self):

# Ground truth from NCBI classifications
self.NCBI_TT4 = set(['s__Candidatus Hodgkinia cicadicola', 's__Candidatus Nasuia deltocephalinicola', 's__Candidatus Stammera capleta'])
self.NCBI_TT4.update(set(['s__Candidatus Organicella extenuata', 's__Candidatus Pinguicoccus supinus']))
self.NCBI_TT4.update(set(['s__Hodgkinia cicadicola', 's__Nasuia deltocephalinicola', 's__Stammera capleta']))
self.NCBI_TT4.update(set(['s__Organicella extenuata', 's__Pinguicoccus supinus']))

# These species clusters have an unclear ground truth, see https://doi.org/10.1093/gbe/evad164
self.GTDB_UNRESOLVED = set(['s__Providencia_A siddallii', 's__Providencia_A siddallii_A'])
Expand Down
Loading