hippoNucleiLabeler

A cross-platform cell type labeler for single-nuclei RNA-seq from the mouse hippocampus.

Trained on Parse and 10x single-nuclei data from multiple labs and animal ages, processed with both cellranger and alevin-fry.

Getting started

library(hippoNucleiLabeler)
model <- loadLabeler()
sce <- labelCells(sce, model)

This will add cell labels to the object, both for specific cell types and broad classes, as well as probabilities:

table(sce$labeler.broadClass)
table(sce$labeler.label)
hist(sce$labeler.score)