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Feature/progress and threads
- #96
#96
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RalfG
merged 15 commits into
release/4.0
CompOmics/DeepLC:release/4.0
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feature/progress-and-threads
CompOmics/DeepLC:feature/progress-and-threads
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Mar 16, 2026
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Feature/progress and threads
#96
RalfG
merged 15 commits into
release/4.0
CompOmics/DeepLC:release/4.0
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feature/progress-and-threads
CompOmics/DeepLC:feature/progress-and-threads
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Commits on Mar 12, 2026
Remove calibration parameter from finetune_and_predict
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Simplify and improve progress bar
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Remove partial freeze support, as this mostly reduces finetuning performance
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Add plain calibration function to core to avoid code duplication and add user friendly entry point for calibration of PSMs
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Fix missing encoding for terminal modifications
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Update function order in _features; add todo for fixed modifications
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Commits on Mar 13, 2026
Improve linear calibration; remove 'simplified' option in spline calibration.
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Improve logging and progress bar
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Change to SplineCalibration by default after finetuning
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Hard fix promote buffers to parameters in model files, avoiding fix on every model load
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Commits on Mar 16, 2026
Improve piece-wise linear calibration:
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Add show_progress parameter to predict
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Update tests
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Packaging: Update manifest file
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Update changelog for alpha.1 release; fix linting
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