PaperPilot v1.6.0

Added

• Added the Netlify online experience for LLM-planned public literature search.
• Added lightweight Markdown and HTML report downloads in the browser demo.
• Documented the hosted Netlify demo and DeepSeek OpenAI-compatible environment configuration.

Changed

• Switched the Netlify online demo defaults to DeepSeek deepseek-v4-flash.
• Updated online search result count options to 10, 30, and 50 papers.

PaperPilot v1.5.3

Changed

• Removed the default 30-paper minimum gate for formal reports.
• Changed the default final report cap to 100 papers.
• Kept --min-report-papers as an optional user-controlled minimum; default is now 0.
• Updated README, Chinese README, project homepage, quality gate, and report wording for the new report-size policy.

PaperPilot v1.5.2

Changed

• Updated README, Chinese README, and project homepage wording to describe PaperPilot as a broader scholarly literature review agent for AI, biomedicine, and AI for Science.

Fixed

• Fixed non-RNA / non-AI biomedical topics being over-screened to zero papers.
• Fixed query understanding prompts that could silently narrow broad biomedical requests into AI-only protocols.
• Replaced the RNA-specific screening gate with topic-adaptive relevance scoring while preserving RNA inverse-folding exclusions.
• Fixed the interactive welcome banner to show the package version dynamically instead of stale v1.3.

Added

• Added a formal 30-paper minimum policy for generated literature reports.
• Added --min-report-papers and --no-obsidian-wiki CLI options.
• Added report_selection.json and shortfall.json diagnostics for minimum-report enforcement.
• Added default Obsidian Wiki export under obsidian_wiki/ with paper, method, topic, claim, manifest, and lint files.

Changed

• Final report selection is now core-first, then code-filter fallback, then adjacent-paper fill when needed.
• Quality gate metrics now record minimum-report counts, fill counts, and code-filter fallback counts.
• README, Chinese README, local usage docs, and project homepage now document the 30-paper policy and Obsidian Wiki output.

Added

• Release infrastructure refinement: scripts/release_everywhere.sh now supports end-to-end local validation + dry-run with clean push/PyPI gating.
• CLI/docs alignment clean-up: release helper examples now use version placeholders and avoid stale manual version pinning in docs.
• Publishing workflow polish: stable dry-run behavior and deterministic changelog extraction for GitHub release notes.

Changed

• Updated version tracking to keep pyproject.toml and literature_agent/__init__.py in sync during one-command release flows.
• Improved release safety: skip-push / no-pypi / dry-run semantics are now consistently applied across publishing stages.

Added

• Added multi-source registry expansion with papers.cool and deepxiv integration.
• Added citation-numbered canonical reporting flow with consistent zh/en/html/pdf outputs and evidence mapping.
• Added stronger workflow observability: richer run artifacts, source diagnostics, evidence ledger flow and doctor checks.
• Added prompt registry improvements and synthesis depth enhancements (RQ framing, method taxonomy, claims/evidence map, contradiction tracking).
• Added default ~/.paperpilot/config.json initialization behavior and optional source API slots in config templates.
• Added GitHub homepage content under docs/ for project promotion.

Changed

• Upgraded report synthesis pipeline to produce deeper review-style text (background, methods, evidence, trends, gaps).
• Improved paper normalization and ranking robustness for mixed-type metadata.
• Fixed citation manifest alignment and report table rendering stability.

Fixed

• Fixed evidence ledger generation edge cases when claim IDs are absent.
• Fixed workflow manifest version drift by binding to package version.
• Fixed rank/synthesis pipeline compatibility with non-string metadata inputs.
• Added source management commands and interactive /sources command.
• Added doctor workflow and richer CLI presentation.

PaperPilot v1.5.1

Fixed

• Fixed non-RNA / non-AI biomedical topics being over-screened to zero papers.
• Fixed query understanding prompts that could silently narrow broad biomedical requests into AI-only protocols.
• Replaced the RNA-specific screening gate with topic-adaptive relevance scoring while preserving RNA inverse-folding exclusions.
• Fixed the interactive welcome banner to show the package version dynamically instead of stale v1.3.

Added

• Added a formal 30-paper minimum policy for generated literature reports.
• Added --min-report-papers and --no-obsidian-wiki CLI options.
• Added report_selection.json and shortfall.json diagnostics for minimum-report enforcement.
• Added default Obsidian Wiki export under obsidian_wiki/ with paper, method, topic, claim, manifest, and lint files.

Changed

• Final report selection is now core-first, then code-filter fallback, then adjacent-paper fill when needed.
• Quality gate metrics now record minimum-report counts, fill counts, and code-filter fallback counts.
• README, Chinese README, local usage docs, and project homepage now document the 30-paper policy and Obsidian Wiki output.

Added

• Release infrastructure refinement: scripts/release_everywhere.sh now supports end-to-end local validation + dry-run with clean push/PyPI gating.
• CLI/docs alignment clean-up: release helper examples now use version placeholders and avoid stale manual version pinning in docs.
• Publishing workflow polish: stable dry-run behavior and deterministic changelog extraction for GitHub release notes.

Changed

• Updated version tracking to keep pyproject.toml and literature_agent/__init__.py in sync during one-command release flows.
• Improved release safety: skip-push / no-pypi / dry-run semantics are now consistently applied across publishing stages.

Added

• Added multi-source registry expansion with papers.cool and deepxiv integration.
• Added citation-numbered canonical reporting flow with consistent zh/en/html/pdf outputs and evidence mapping.
• Added stronger workflow observability: richer run artifacts, source diagnostics, evidence ledger flow and doctor checks.
• Added prompt registry improvements and synthesis depth enhancements (RQ framing, method taxonomy, claims/evidence map, contradiction tracking).
• Added default ~/.paperpilot/config.json initialization behavior and optional source API slots in config templates.
• Added GitHub homepage content under docs/ for project promotion.

Changed

• Upgraded report synthesis pipeline to produce deeper review-style text (background, methods, evidence, trends, gaps).
• Improved paper normalization and ranking robustness for mixed-type metadata.
• Fixed citation manifest alignment and report table rendering stability.

Fixed

• Fixed evidence ledger generation edge cases when claim IDs are absent.
• Fixed workflow manifest version drift by binding to package version.
• Fixed rank/synthesis pipeline compatibility with non-string metadata inputs.
• Added source management commands and interactive /sources command.
• Added doctor workflow and richer CLI presentation.

PaperPilot v1.5.0

Added

• Added a formal 30-paper minimum policy for generated literature reports.
• Added --min-report-papers and --no-obsidian-wiki CLI options.
• Added report_selection.json and shortfall.json diagnostics for minimum-report enforcement.
• Added default Obsidian Wiki export under obsidian_wiki/ with paper, method, topic, claim, manifest, and lint files.

Changed

• Final report selection is now core-first, then code-filter fallback, then adjacent-paper fill when needed.
• Quality gate metrics now record minimum-report counts, fill counts, and code-filter fallback counts.
• README, Chinese README, local usage docs, and project homepage now document the 30-paper policy and Obsidian Wiki output.

PaperPilot v1.4.5

Added

• Release infrastructure refinement: scripts/release_everywhere.sh now supports end-to-end local validation + dry-run with clean push/PyPI gating.
• CLI/docs alignment clean-up: release helper examples now use version placeholders and avoid stale manual version pinning in docs.
• Publishing workflow polish: stable dry-run behavior and deterministic changelog extraction for GitHub release notes.

Changed

• Updated version tracking to keep pyproject.toml and literature_agent/__init__.py in sync during one-command release flows.
• Improved release safety: skip-push / no-pypi / dry-run semantics are now consistently applied across publishing stages.

PaperPilot v1.1.0

PaperPilot v1.1.0

Initial open source release of PaperPilot.

Highlights

• Interactive CLI: PaperPilot
• LLM configuration and model management
• Research workflow: Intake -> Protocol -> Search -> Corpus -> Screening -> Verification -> Synthesis -> Review -> Report
• Multi-source literature search
• Relevance screening and quality gates
• Evidence ledger and review agent findings
• Bilingual Markdown, HTML, and PDF reports
• Citation-numbered references with paper/code links
• PyPI package support

Install

pip install paperpilot