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@BioDT

BioDT

Horizon EU Biodiversity Digital Twin

BioDT GitHub Organisation

The repositories here contain codes and material developed within the BioDT project funded by the European Union's Horizon Europe research and innovation programme under grant agreement No 101057437.

Prototype Digital Twins (pDTs)

The pDTs have been developed within the BioDT use cases (UCs), and the codes are available in the corresponding repositories:

BioDT web application app.biodt.eu

The codes for the BioDT shiny web app are available here.


Guidelines for naming new repositories

  • Use lower-case letters where possible.
  • General-use features identified by adding general to the beginning of the repository name, e.g. general-datamover.
  • Use case-specific code similarly identified by uc and the name of the UC, e.g. uc-grassland.

Separate features (such as individual digital twin components) may be kept in folders inside a given repository. In case it is preferable to create a separate repository for a feature, the name of the feature should be added to the end of the repository name (e.g. uc-grassland-feature1).

Popular repositories Loading

  1. biodt-shiny biodt-shiny Public

    This repository contains a shiny application which is intended as the simplest way of interacting with BioDT by end-users.

    R 8 3

  2. bfm-model bfm-model Public

    Multi-modal Foundation Model for Biodiversity dynamics forecasting

    Python 6 2

  3. bfm-data bfm-data Public

    BioCube: A Multimodal Dataset for Biodiversity

    Jupyter Notebook 5 1

  4. biodt-fair biodt-fair Public

    Documentation, resources, and other materials related to FAIR and open science from the BioDT project.

    Python 4 2

  5. uc-ces uc-ces Public

    Modelling code for cultural ecosystem services pDT within BioDT

    R 3 1

  6. Hackathon25 Hackathon25 Public

    BioDT School and Hackathon 2025

    Jupyter Notebook 3 2

Repositories

Showing 10 of 32 repositories
  • biodt-shiny Public

    This repository contains a shiny application which is intended as the simplest way of interacting with BioDT by end-users.

    BioDT/biodt-shiny’s past year of commit activity
    R 8 3 17 0 Updated Nov 5, 2025
  • uc-grassland-model Public

    grassland simulation model source code

    BioDT/uc-grassland-model’s past year of commit activity
    C++ 2 EUPL-1.2 0 0 0 Updated Nov 5, 2025
  • BioDT/uc-forest-bird’s past year of commit activity
    R 1 MIT 2 0 0 Updated Nov 3, 2025
  • uc-grassland Public

    pDT grassland main repository

    BioDT/uc-grassland’s past year of commit activity
    Python 1 EUPL-1.2 0 0 0 Updated Oct 28, 2025
  • general-soilgrids-soil-data Public

    Building block for obtaining selected soil data at given location from SoilGrids and derived data sources (Soilgrids REST API, HiHydroSoil map).

    BioDT/general-soilgrids-soil-data’s past year of commit activity
    Python 2 EUPL-1.2 2 0 0 Updated Oct 24, 2025
  • general-copernicus-weather-data Public

    Building block for obtaining selected weather data at given location (0.1° x 0.1° spatial resolution) for desired time periods, at hourly resolution, e.g. from Copernicus ERA5-Land dataset

    BioDT/general-copernicus-weather-data’s past year of commit activity
    Python 1 EUPL-1.2 0 0 0 Updated Oct 24, 2025
  • IASDT.R Public

    IASDT.R: Modelling the distribution of invasive alien plant species in Europe

    BioDT/IASDT.R’s past year of commit activity
    R 1 0 0 0 Updated Oct 17, 2025
  • bfm-finetune Public

    Finetune routines for the Biodiveristy Foundation Model

    BioDT/bfm-finetune’s past year of commit activity
    Jupyter Notebook 0 1 1 0 Updated Sep 23, 2025
  • bfm-model Public

    Multi-modal Foundation Model for Biodiversity dynamics forecasting

    BioDT/bfm-model’s past year of commit activity
    Python 6 2 0 0 Updated Sep 18, 2025
  • bfm-data Public

    BioCube: A Multimodal Dataset for Biodiversity

    BioDT/bfm-data’s past year of commit activity
    Jupyter Notebook 5 1 0 0 Updated Sep 10, 2025