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10 changes: 9 additions & 1 deletion _data/news.yml
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Expand Up @@ -5,4 +5,12 @@
- name: "NCI Data Collection now available!"
date: 2026-02-23
url: https://dx.doi.org/10.25914/q48c-9a86
description: "This collection replicates key reference databases used for protein structure prediction and analysis. These resources enable NCI users to leverage deep learning models for molecular structure prediction. The datasets support AlphaFold3, AlphaFold2, Boltz, RoseTTaFold-All-Atom, ESMFold and HelixFold3 structure prediction tools."
description: "This collection replicates key reference databases used for protein structure prediction and analysis. These resources enable NCI users to leverage deep learning models for molecular structure prediction. The datasets support AlphaFold3, AlphaFold2, Boltz, RoseTTaFold-All-Atom, ESMFold and HelixFold3 structure prediction tools."
- name: "ASBC @ the AI for Science Hackathon"
date: 2026-03-26
url: https://www.biocommons.org.au/news/ai-for-science-hackathon-2026
description: "Australian Structural Biology Computing (ASBC) community (UNSW Structural Biology Facility, WEHI, and the Monash AI Protein Design Program) contributed to the AI for Science Hackathon, bringing their expertise in optimising workflows for protein structure prediction and design."
- name: "Foundations of protein structure training module now available!"
date: 2026-04-17
url: https://doi.org/10.6019/tol.foundations-protein-structure-t.2026.00001.1
description: "A module added to the training material made available by EMBL-EBI. Module development was a collaboration between the ASBC community, BioCommons, and EMBL-EBI Protein Data Bank in Europe (PDBe)."
12 changes: 6 additions & 6 deletions _data/sidebars/main.yml
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Expand Up @@ -15,19 +15,19 @@ subitems:
url: /community_resources
- title: How-to Guides
url: /guides
- title: Workflows
url: /workflows
- title: External resources
subitems:
- title: Structure Prediction
- title: Structure prediction
url: /structure_prediction
- title: Protein Design
- title: Protein design
url: /protein_design
- title: Protein Search
- title: Protein search
url: /protein_search
- title: Molecular Dynamics
- title: Molecular dynamics
url: /molecular_dynamics
- title: Infrastructure
url: /infrastructure
- title: Events
url: /events
- title: News
url: /news
21 changes: 18 additions & 3 deletions _data/tool_and_resource_list.yml
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Type:
- Reference database
URL: https://cluster.foldseek.com/
- Description: Reference data to support AI structural biology prediction models
- Description: Reference data to support AI structural biology prediction models.
Tag: Community resource
Title: NCI Structural Biology AI Reference Collection
Type:
- Reference database
Roadmap:
- Roadmap deliverable 2
URL: https://dx.doi.org/10.25914/q48c-9a86
DOI: https://dx.doi.org/10.25914/q48c-9a86
- Description: Online tutorial covering the principles of protein architecture and function
- Description: Online tutorial covering the principles of protein architecture and function.
Tag: Community resource
Title: Foundations of protein structure tutorial
Type:
- Online tutorial
Roadmap:
- Roadmap deliverable 2 & 4
URL: https://www.ebi.ac.uk/training/online/courses/foundations-protein-structure/
DOI: https://doi.org/10.6019/tol.foundations-protein-structure-t.2026.00001.1
- Description: A limited series of webinars from 2025 that shared strategies to get the best outcomes from protein design projects.
Tag: Community resource
Title: Protein design webinar series
Type:
- Webinar series
Roadmap:
- Roadmap deliverable 2
URL: protein_design_seminars
DOI: https://doi.org/10.5281/zenodo.17626498
DOI: https://doi.org/10.5281/zenodo.17626498
- Description: A nextflow pipeline with support for numerous structure prediction tools.
Tag: Community resource
Title: nf-core ProteinFold v2.0.0
Type:
- Workflow
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Roadmap:
- Roadmap deliverable 3
URL: nfcore_proteinfold
DOI: https://doi.org/10.5281/zenodo.7437037
11 changes: 10 additions & 1 deletion _includes/resource-table-category.html
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{%- else %}
<td>{{tool.Title}}</td>
{%- endif %}
<td>{{tool.Description}}</td>
<td>
{{tool.Description}}
{% if tool.Roadmap %}
{%- for type in tool.Roadmap %}
<button class="btn btn-light badge border border-dark text-dark mb-2 text-wrap text-center topic-badge">
{{type}}
</button>
{%- endfor %}
{%- endif %}
</td>
{% if tool.DOI%}
<td><a href="{{tool.DOI}}">DOI</a></td>
{%- else %}
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17 changes: 9 additions & 8 deletions index.md
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Expand Up @@ -43,14 +43,15 @@ Starting this year, speakers from across the structural biology community will b
{% include tiles-simple.html target = "community_meeting" col = "1" %}


#### All meeting dates

- **11th March 2026**
- **20th May 2026**
- **29th July 2026**
- **16th September 2026**
- **4th November 2026**

#### All meeting dates and speakers

| Date | Speaker | Talk title |
|------|--------------------------------------------------------------------------------------|---------------------------------------------------------------------------|
| March 11th | **Biswa Prasanna Mishra**<br>(Griffith University) | Molecular Characterisation of the *Bacillus subtilis SpbK* antiphage defence system |
| May 20th | **Cameron Gilchrist**<br>(Seoul National University) | Multiple protein structure alignment with FoldMason |
| 29th July | TBA | TBA |
| 16th September | **Tom Goddard**<br>(UCSF) | Predicting atomic structures using OpenFold 3 in ChimeraX |
| 12th November | TBA | TBA |


{% include callout.html type="note" content="These dates may change depending on other community events and the availability of speakers. " %}
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2 changes: 1 addition & 1 deletion pages/activities/ebi_module_dev.md
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@@ -1,7 +1,7 @@
---
title: EMBL-EBI Foundations of Protein Structure module development
description: Developing the content for an online EMBL-EBI tutorial covering the principles of protein architecture and function.
type: Activity_in_progress
type: Completed_activity
roadmap_category: Global-connections
contributors: [Jennifer Fleming, Kristina Gagalova, Johan Gustafsson, Michael Healy, Thomas Litfin, Paulyna Magaña, Katharine Michie]
toc: false
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14 changes: 8 additions & 6 deletions pages/activities/nfcore_proteinfold.md
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@@ -1,14 +1,19 @@
---
title: nf-core ProteinFold v2.0 Release
description: Contribute towards, and locally deploy, v2.0 of nf-core ProteinFold workflow.
type: Activity_in_progress
title: nf-core ProteinFold v2.0.0 Release
description: Contribute towards, and locally deploy, v2.0.0 of nf-core ProteinFold workflow.
type: Completed_activity
roadmap: A shared platform, or platforms (Roadmap D3A)
roadmap_category: Shared-platform
contributors: [Ziad Al-Bkhetan, Mitchell O'Brien, Joshua Storm Caley, Keiran Rowell, Thomas Litfin]
toc: false
redirect_from: /website/nfcore_proteinfold
tiles:
- title: "See version 2.0.0 of the nf-core/proteinfold workflow"
url: https://nf-co.re/proteinfold/2.0.0/
---

{% include tiles-simple.html target = "tiles" col = "1" %}

## Details

- Molecular structure prediction tools require large reference databases and varied computational infrastructure.
Expand All @@ -34,7 +39,4 @@ redirect_from: /website/nfcore_proteinfold
- Add miniature reference databases for fast troubleshooting.
- Update documentation and metro-map.
- Test for release.

### In Progress

- Review workflow outputs for all modes.
29 changes: 29 additions & 0 deletions pages/activities/website_dev.md
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@@ -0,0 +1,29 @@
---
title: Community website
description: Development and maintenance of the Australian Structural Biology Computing (ASBC) community website.
type: Activity_in_progress
roadmap_category: Community-space
contributors: [Johan Gustafsson, Thomas Litfin, Kate Michie]
toc: false
---

## Details


### Completed

- Initial version of the website
- Mechanisms for joining the community
- Streamlined appearance and mechanics for all pages


### In Progress

- Sharing mechanism for computational workflows
- Adding contributors


### Future

- Sharing mechanism for events
- Sharing mechanism for both community resources and external resources
2 changes: 1 addition & 1 deletion pages/resources/molecular_dynamics.md
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@@ -1,5 +1,5 @@
---
title: Molecular Dynamics
title: Molecular dynamics
page_id: external_resources_md
datatable: true
toc: false
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2 changes: 1 addition & 1 deletion pages/resources/protein_design.md
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@@ -1,5 +1,5 @@
---
title: Protein Design
title: Protein design
page_id: external_resources_protein_design
datatable: true
toc: false
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2 changes: 1 addition & 1 deletion pages/resources/protein_search.md
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@@ -1,5 +1,5 @@
---
title: Protein Search
title: Protein search
page_id: external_resources_search
datatable: true
toc: false
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2 changes: 1 addition & 1 deletion pages/resources/structure_prediction.md
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@@ -1,5 +1,5 @@
---
title: Structure Prediction
title: Structure prediction
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page_id: external_structure_prediction
datatable: true
toc: false
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