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added human-to-human communicability. Fixes #191 #270

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Merged
hoganwr merged 3 commits into from
Mar 16, 2026
Merged

added human-to-human communicability. Fixes #191 #270

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e5f3191
added human-to-human communicability. Fixes #191
hoganwr Mar 14, 2026
1c6613d
updated the new class w/axiom that indicates human participants
hoganwr Mar 14, 2026
75af5e3
fixed reasoning error w/axiom I added.
hoganwr Mar 15, 2026
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23 changes: 18 additions & 5 deletions src/ontology/apollo_sv-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -687,6 +687,7 @@ Declaration(Class(obo:APOLLO_SV_00000649))
Declaration(Class(obo:APOLLO_SV_00000650))
Declaration(Class(obo:APOLLO_SV_00000651))
Declaration(Class(obo:APOLLO_SV_00000652))
Declaration(Class(obo:APOLLO_SV_00000653))
Declaration(Class(obo:APOLLO_SV_00000793))
Declaration(Class(obo:APOLLO_SV_00000794))
Declaration(Class(obo:APOLLO_SV_00000795))
Expand Down Expand Up @@ -1740,11 +1741,11 @@ AnnotationAssertion(rdfs:label dc:type "dc:type")

AnnotationAssertion(rdfs:label oboInOwl:hasAlternativeId "has_alternative_id")

# Annotation Property: oboInOwl:hasBroadSynonym (has_broad_synonym)
# Annotation Property: oboInOwl:hasBroadSynonym (has broad synonym)

AnnotationAssertion(rdfs:label oboInOwl:hasBroadSynonym "has_broad_synonym")

# Annotation Property: oboInOwl:hasDbXref (has cross-reference)
# Annotation Property: oboInOwl:hasDbXref (database_cross_reference)

AnnotationAssertion(rdfs:label oboInOwl:hasDbXref "database_cross_reference")

Expand All @@ -1760,7 +1761,7 @@ AnnotationAssertion(rdfs:label oboInOwl:hasNarrowSynonym "has_narrow_synonym")

AnnotationAssertion(rdfs:label oboInOwl:hasOBONamespace "has_obo_namespace")

# Annotation Property: oboInOwl:hasRelatedSynonym (has_related_synonym)
# Annotation Property: oboInOwl:hasRelatedSynonym (has related synonym)

AnnotationAssertion(rdfs:label oboInOwl:hasRelatedSynonym "has_related_synonym")

Expand Down Expand Up @@ -2204,7 +2205,7 @@ AnnotationAssertion(obo:IAO_0000412 obo:OMIABIS_0000048 "http://purl.obolibrary.
AnnotationAssertion(rdfs:label obo:OMIABIS_0000048 "is owned by"@en)
SubObjectPropertyOf(obo:OMIABIS_0000048 owl:topObjectProperty)

# Object Property: obo:RO_0000053 (bearer of)
# Object Property: obo:RO_0000053 (has characteristic)

AnnotationAssertion(obo:IAO_0000118 obo:RO_0000053 "bearer of"@en)
AnnotationAssertion(obo:IAO_0000118 obo:RO_0000053 "bearer_of"@en)
Expand Down Expand Up @@ -8338,6 +8339,18 @@ AnnotationAssertion(rdfs:comment obo:APOLLO_SV_00000652 "The case of adult child
AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000652 "intent to have a child vaccinated"@en)
SubClassOf(obo:APOLLO_SV_00000652 obo:APOLLO_SV_00000650)

# Class: obo:APOLLO_SV_00000653 (human-to-human communicability)

AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000653 "communicability among human beings"@en)
AnnotationAssertion(obo:IAO_0000115 obo:APOLLO_SV_00000653 "A communicability among human beings (homo sapiens)."@en)
AnnotationAssertion(obo:IAO_0000117 obo:APOLLO_SV_00000653 "William R. Hogan"@en)
AnnotationAssertion(obo:IAO_0000600 obo:APOLLO_SV_00000653 "The ability of a pathogen to transmit from one human host to another human host."@en)
AnnotationAssertion(apollo_sv:APOLLO_SV_0000040 obo:APOLLO_SV_00000653 "HumanToHumanCommunicability")
AnnotationAssertion(terms:contributor obo:APOLLO_SV_00000653 <https://orcid.org/0000-0002-9881-1017>)
AnnotationAssertion(rdfs:label obo:APOLLO_SV_00000653 "human-to-human communicability"@en)
SubClassOf(obo:APOLLO_SV_00000653 obo:IDO_0000623)
SubClassOf(obo:APOLLO_SV_00000653 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:BFO_0000040) ObjectAllValuesFrom(obo:BFO_0000054 ObjectIntersectionOf(obo:BFO_0000015 ObjectSomeValuesFrom(obo:RO_0000057 obo:NCBITaxon_9606)))))

# Class: obo:APOLLO_SV_00000793 (epidemic simulator action specification)

AnnotationAssertion(obo:IAO_0000111 obo:APOLLO_SV_00000793 "epidemic simulator action specification"@en)
Expand Down Expand Up @@ -14430,7 +14443,7 @@ AnnotationAssertion(rdfs:label <http://www.ebi.ac.uk/efo/EFO_0004600> "genomic d
SubClassOf(<http://www.ebi.ac.uk/efo/EFO_0004600> obo:IAO_0000100)
SubClassOf(<http://www.ebi.ac.uk/efo/EFO_0004600> ObjectSomeValuesFrom(obo:IAO_0000136 obo:OBI_0100026))

# Class: oboInOwl:ObsoleteClass (Obsolete Class)
# Class: oboInOwl:ObsoleteClass (obsolete_class)

AnnotationAssertion(rdfs:label oboInOwl:ObsoleteClass "Obsolete Class"@en)

Expand Down
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