I have four different animals crossed (AxB) and (cxD) to give me ABCD mix. I know that the F2 has ABCD haplotypes and I wanted to assesses haplotype-specific gene expression. From the results below, how can one tell which gene is linked to what haplotype, because I only see "block_ID". Is there a way the above haplotypes can be rendered in the final result? instead of 1,2,3 etc, we have A, B, C, D etc to help know which gene is significantly expressed in in which haplotype.
block_id predictors individuals MR2 pval qval gene
1 3 3 373 0.08157302 7.766700e-07 1.320339e-05 ENSG00000230699.2
2 4 5 373 0.08340761 6.416704e-06 3.636132e-05 ENSG00000230699.2
3 5 6 373 0.06835397 2.382716e-04 1.012654e-03 ENSG00000230699.2
4 6 2 373 0.06714778 2.888405e-06 2.455145e-05 ENSG00000230699.2
5 7 1 373 0.02494721 2.311096e-03 6.548105e-03 ENSG00000230699.2
6 8 1 373 0.02208597 4.171539e-03 1.013088e-02 ENSG00000230699.2
7 10 2 373 0.03806141 8.082365e-04 2.748004e-03 ENSG00000230699.2
8 11 1 373 0.01480668 1.921155e-02 4.082455e-02 ENSG00000230699.2
9 14 3 373 0.03847154 2.433145e-03 4.136346e-02 ENSG00000187961.7
I have four different animals crossed (AxB) and (cxD) to give me ABCD mix. I know that the F2 has ABCD haplotypes and I wanted to assesses haplotype-specific gene expression. From the results below, how can one tell which gene is linked to what haplotype, because I only see "block_ID". Is there a way the above haplotypes can be rendered in the final result? instead of 1,2,3 etc, we have A, B, C, D etc to help know which gene is significantly expressed in in which haplotype.