v3.0.0 · zarr-developers zarr-python · Discussion #2676 · GitHub

jhamman
Jan 9, 2025
Maintainer

What's Changed

Disable pre-commit.ci's PR autofixes by @jakirkham in Disable pre-commit.ci's PR autofixes #1506
Bump redis from 4.5.5 to 4.6.0 by @dependabot in Bump redis from 4.5.5 to 4.6.0 #1446
Bump ipywidgets from 8.0.7 to 8.1.0 by @dependabot in Bump ipywidgets from 8.0.7 to 8.1.0 #1510
Bump actions/checkout from 3 to 4 by @dependabot in Bump actions/checkout from 3 to 4 #1520
Tiny tweak: Extend copyright notice to 2023 by @JackKelly in Tiny tweak: Extend copyright notice to 2023 #1528
Bump pytest from 7.3.2 to 7.4.0 by @dependabot in Bump pytest from 7.3.2 to 7.4.0 #1445
Allow black to be run on any Python version by @dstansby in Allow black to be run on any Python version #1549
Unnecessary list literal → set literal by @DimitriPapadopoulos in Unnecessary list literal → set literal #1534
Minor edits in docs by @MSanKeys963 in Minor edits in docs #1509
Preserve dimension separator metadata when resizing arrays by @ziw-liu in Preserve dimension separator metadata when resizing arrays #1540
io.open → open by @DimitriPapadopoulos in io.open → open #1421
Bump pymongo from 4.4.0 to 4.5.0 by @dependabot in Bump pymongo from 4.4.0 to 4.5.0 #1507
Fix typo newly found by codespell by @DimitriPapadopoulos in Fix typo newly found by codespell #1554
Bump actions/setup-python from 4.6.0 to 4.7.1 by @dependabot in Bump actions/setup-python from 4.6.0 to 4.7.1 #1541
Bump pytest-doctestplus from 0.13.0 to 1.0.0 by @dependabot in Bump pytest-doctestplus from 0.13.0 to 1.0.0 #1512
Bump fasteners from 0.18 to 0.19 by @dependabot in Bump fasteners from 0.18 to 0.19 #1553
Add links to numcodecs docs in tutorial by @dstansby in Add links to numcodecs docs in tutorial #1535
Fail doc build on warnings by @dstansby in Fail doc build on warnings #1548
DOC: Enable offline formats by @MSanKeys963 in DOC: Enable offline formats #1560
Remove dependency by @MSanKeys963 in Remove dependency #1563
Bump setuptools-scm from 7.1.0 to 8.0.4 by @dependabot in Bump setuptools-scm from 7.1.0 to 8.0.4 #1562
Bump redis from 4.6.0 to 5.0.1 by @dependabot in Bump redis from 4.6.0 to 5.0.1 #1561
Update release.rst by @MSanKeys963 in Update release.rst #1574
Automatically document Array members by @dstansby in Automatically document Array members #1547
DOC: Minor tweak to advanced indexing example in tutorial by @rossbar in DOC: Minor tweak to advanced indexing example in tutorial #1550
Bump h5py from 3.9.0 to 3.10.0 by @dependabot in Bump h5py from 3.9.0 to 3.10.0 #1571
Bump fsspec from 2023.6.0 to 2023.10.0 by @dependabot in Bump fsspec from 2023.6.0 to 2023.10.0 #1570
Bump pytest-timeout from 2.1.0 to 2.2.0 by @dependabot in Bump pytest-timeout from 2.1.0 to 2.2.0 #1577
Bump pytest from 7.4.0 to 7.4.3 by @dependabot in Bump pytest from 7.4.0 to 7.4.3 #1576
Bump conda-incubator/setup-miniconda from 2.2.0 to 2.3.0 by @dependabot in Bump conda-incubator/setup-miniconda from 2.2.0 to 2.3.0 #1575
Remove CODE_OF_CONDCUT.md file from the Zarr-Python repo by @MSanKeys963 in Remove CODE_OF_CONDCUT.md file from the Zarr-Python repo #1572
Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 by @dependabot in Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 #1586
Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.1 by @dependabot in Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.1 #1587
Bootstrap v3 branch with zarrita by @jhamman in Bootstrap v3 branch with zarrita #1584
Cache result of FSStore._fsspec_installed() by @ph03 in Cache result of FSStore._fsspec_installed() #1581
Extensible codecs for V3 by @normanrz in Extensible codecs for V3 #1588
Bump version of black in pre-commit by @dstansby in Bump version of black in pre-commit #1559
Use list comprehension where applicable by @DimitriPapadopoulos in Use list comprehension where applicable #1555
Bump numcodecs from 0.11.0 to 0.12.1 by @dependabot in Bump numcodecs from 0.11.0 to 0.12.1 #1580
Use format specification mini-language to format string by @DimitriPapadopoulos in Use format specification mini-language to format string #1558
Single startswith() call instead of multiple ones by @DimitriPapadopoulos in Single startswith() call instead of multiple ones #1556
Bump pymongo from 4.5.0 to 4.6.1 by @dependabot in Bump pymongo from 4.5.0 to 4.6.1 #1585
Move codespell options around by @DimitriPapadopoulos in Move codespell options around #1196
Bump fsspec from 2023.10.0 to 2023.12.1 by @dependabot in Bump fsspec from 2023.10.0 to 2023.12.1 #1600
Add type hints to zarr.create by @dstansby in Add type hints to zarr.create #1536
Remove unused mypy ignore comments by @dstansby in Remove unused mypy ignore comments #1602
Bump actions/setup-python from 4.7.1 to 5.0.0 by @dependabot in Bump actions/setup-python from 4.7.1 to 5.0.0 #1605
Bump github/codeql-action from 2 to 3 by @dependabot in Bump github/codeql-action from 2 to 3 #1609
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #1448
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #1618
Bump fsspec from 2023.12.1 to 2023.12.2 by @dependabot in Bump fsspec from 2023.12.1 to 2023.12.2 #1606
Bump pytest-doctestplus from 1.0.0 to 1.1.0 by @dependabot in Bump pytest-doctestplus from 1.0.0 to 1.1.0 #1619
Bump pytest from 7.4.3 to 7.4.4 by @dependabot in Bump pytest from 7.4.3 to 7.4.4 #1622
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #1626
Create TEAM.md by @jhamman in Create TEAM.md #1628
Drop python 3.8 and numpy 1.20 by @joshmoore in Drop python 3.8 and numpy 1.20 #1557
Add Norman Rzepka to core-dev team by @jhamman in Add Norman Rzepka to core-dev team #1630
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #1633
Bump actions/download-artifact from 3 to 4 by @dependabot in Bump actions/download-artifact from 3 to 4 #1611
Update tutorial.rst to include section about accessing Zip Files on S3 by @jeffpeck10x in Update tutorial.rst to include section about accessing Zip Files on S3 #1615
doc(v3): add v3 roadmap and design document by @jhamman in doc(v3): add v3 roadmap and design document #1583
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #1636
Don't import from tests by @d-v-b in Don't import from tests #1601
[V3] Update minimum supported Python and Numpy versions by @jhamman in [V3] Update minimum supported Python and Numpy versions #1638
use src layout and use hatch for packaging by @d-v-b in use src layout and use hatch for packaging #1592
temporarily disable mypy in v3 directory by @jhamman in temporarily disable mypy in v3 directory #1649
create hatch test env by @rabernat in create hatch test env #1650
removed unused environments and workflows by @rabernat in removed unused environments and workflows #1651
Listable V3 Stores by @jhamman in Listable V3 Stores #1634
Codecs without array metadata by @normanrz in Codecs without array metadata #1632
Add env variables to sprint setup instructions by @maxrjones in Add env variables to sprint setup instructions #1654
fix sync group class methods by @jhamman in fix sync group class methods #1652
Specify docs hatch env for v3 branch by @maxrjones in Specify docs hatch env for v3 branch #1655
Add test matrix for V3 by @maxrjones in Add test matrix for V3 #1656
Pyodide support: don't require fasteners on emscripten by @hoodmane in Pyodide support: don't require fasteners on emscripten #1663
Update release.rst by @MSanKeys963 in Update release.rst #1621
Bump numpy from 1.24.3 to 1.26.1 by @dependabot in Bump numpy from 1.24.3 to 1.26.1 #1543
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #1642
Bump ipywidgets from 8.1.0 to 8.1.1 by @dependabot in Bump ipywidgets from 8.1.0 to 8.1.1 #1538
Proper argument for numpy.reshape by @DimitriPapadopoulos in Proper argument for numpy.reshape #1425
Bump ipywidgets from 8.1.1 to 8.1.2 by @dependabot in Bump ipywidgets from 8.1.1 to 8.1.2 #1666
docs: ZIP-related tweaks by @d-v-b in docs: ZIP-related tweaks #1641
Bump numpy from 1.26.1 to 1.26.4 by @dependabot in Bump numpy from 1.26.1 to 1.26.4 #1669
Change occurrences of % and format() to f-strings by @DimitriPapadopoulos in Change occurrences of % and format() to f-strings #1423
Remove attrs by @d-v-b in Remove attrs #1660
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #1672
Bump pymongo from 4.6.1 to 4.6.2 by @dependabot in Bump pymongo from 4.6.1 to 4.6.2 #1674
Bump conda-incubator/setup-miniconda from 3.0.1 to 3.0.2 by @dependabot in Bump conda-incubator/setup-miniconda from 3.0.1 to 3.0.2 #1677
Add typing to dimension separator arguments by @dstansby in Add typing to dimension separator arguments #1620
Replace Gitter with new Zulip Chat link by @MSanKeys963 in Replace Gitter with new Zulip Chat link #1685
Bump redis from 5.0.1 to 5.0.2 by @dependabot in Bump redis from 5.0.1 to 5.0.2 #1688
Bump pypa/gh-action-pypi-publish from 1.8.11 to 1.8.12 by @dependabot in Bump pypa/gh-action-pypi-publish from 1.8.11 to 1.8.12 #1691
Bump pytest-doctestplus from 1.1.0 to 1.2.0 by @dependabot in Bump pytest-doctestplus from 1.1.0 to 1.2.0 #1693
Fix RTD build by @MSanKeys963 in Fix RTD build #1694
Update release.rst for v2.17.1 by @MSanKeys963 in Update release.rst for v2.17.1 #1673
Bump pytest-timeout from 2.2.0 to 2.3.1 by @dependabot in Bump pytest-timeout from 2.2.0 to 2.3.1 #1697
Bump conda-incubator/setup-miniconda from 3.0.2 to 3.0.3 by @dependabot in Bump conda-incubator/setup-miniconda from 3.0.2 to 3.0.3 #1690
docs(tutorial.rst): fix link to GCSMap by @DahnJ in docs(tutorial.rst): fix link to GCSMap #1689
Update installation.rst stating version support policy by @MSanKeys963 in Update installation.rst stating version support policy #1665
Bump pypa/gh-action-pypi-publish from 1.8.12 to 1.8.14 by @dependabot in Bump pypa/gh-action-pypi-publish from 1.8.12 to 1.8.14 #1700
Bump pytest-doctestplus from 1.2.0 to 1.2.1 by @dependabot in Bump pytest-doctestplus from 1.2.0 to 1.2.1 #1699
Bump redis from 5.0.2 to 5.0.3 by @dependabot in Bump redis from 5.0.2 to 5.0.3 #1698
Add Python 3.12 to CI by @jhamman in Add Python 3.12 to CI #1719
Bump pytest-cov from 4.1.0 to 5.0.0 by @dependabot in Bump pytest-cov from 4.1.0 to 5.0.0 #1722
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #1708
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #1723
Fix release notes (following Add Python 3.12 to CI #1719) by @jhamman in Fix release notes (following #1719) #1725
Override ipython repr methods. by @dcherian in Override ipython repr methods. #1724
Bump pymongo from 4.6.2 to 4.6.3 by @dependabot in Bump pymongo from 4.6.2 to 4.6.3 #1729
Remove v1 and v2 specification by @MSanKeys963 in Remove v1 and v2 specification #1582
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #1738
Optimize Array.info and Group.info by @dcherian in Optimize Array.info and Group.info #1733
Bump actions/setup-python from 5.0.0 to 5.1.0 by @dependabot in Bump actions/setup-python from 5.0.0 to 5.1.0 #1736
Couple fixes by @DimitriPapadopoulos in Couple fixes #1737
Fix tests with Pytest 8 by @dstansby in Fix tests with Pytest 8 #1714
Avoid redundant contains by @dcherian in Avoid redundant __contains__ #1739
Array & Group: Use already loaded attributes to populate cache. by @dcherian in Array & Group: Use already loaded attributes to populate cache. #1734
Optimize attribute setting by @dcherian in Optimize attribute setting #1741
Make sure fs exceptions are raised if not MissingFs exceptions (clone) by @itcarroll in Make sure fs exceptions are raised if not MissingFs exceptions (clone) #1604
chore(release): update changelog for 2.17.2 by @jhamman in chore(release): update changelog for 2.17.2 #1775
Resolve Mypy erorrs in v3 branch by @DahnJ in Resolve Mypy erorrs in v3 branch #1692
chore(docs): reset release notes as unreleased by @jhamman in chore(docs): reset release notes as unreleased #1776
Specify hatch envs using GitHub actions matrix for v3 tests by @maxrjones in Specify hatch envs using GitHub actions matrix for v3 tests #1728
black -> ruff format + cleanup by @Saransh-cpp in black -> ruff format + cleanup #1639
Development installation/contributing docs updates by @aldenks in Development installation/contributing docs updates #1643
Allow dmypy to be run on v3 branch by @dstansby in Allow dmypy to be run on v3 branch #1780
Remove unused typing ignore comments by @dstansby in Remove unused typing ignore comments #1781
Check untyped defs on v3 by @dstansby in Check untyped defs on v3 #1784
[v3] Enable some more strict mypy options by @dstansby in [v3] Enable some more strict mypy options #1793
implement eq for LocalStore by @Charoula-Kyriakides in implement __eq__ for LocalStore #1792
Remove old v3 by @d-v-b in Remove old v3 #1742
Bump codecov/codecov-action from 3 to 4 by @dependabot in Bump codecov/codecov-action from 3 to 4 #1647
[v3] Disallow generic Any typing by @dstansby in [v3] Disallow generic Any typing #1794
Update release.rst for v2.17.2 by @MSanKeys963 in Update release.rst for v2.17.2 #1778
Deprecate the experimental v3 implementation by @jhamman in Deprecate the experimental v3 implementation #1802
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #1779
Fix is_total_slice for size-1 dimensions by @dcherian in Fix is_total_slice for size-1 dimensions #1800
V3 update pre commit by @jhamman in V3 update pre commit #1808
V3 reorg by @jhamman in V3 reorg #1809
[v3] Sync with futures by @d-v-b in [v3] Sync with futures #1804
implement group.members by @d-v-b in implement group.members #1726
remove windows testing on v3 branch by @jhamman in remove windows testing on v3 branch #1817
add note to the top of the release page noting the plan for 2.18.* and 3.0 by @jhamman in add note to the top of the release page noting the plan for 2.18.* and 3.0 #1816
Bump conda-incubator/setup-miniconda from 3.0.3 to 3.0.4 by @dependabot in Bump conda-incubator/setup-miniconda from 3.0.3 to 3.0.4 #1824
dep(docs): deprecate experimental v3 support in docs by @jhamman in dep(docs): deprecate experimental v3 support in docs #1807
Disallow incomplete type definitions by @dstansby in Disallow incomplete type definitions #1814
fix: add mypy to test dependencies by @d-v-b in fix: add mypy to test dependencies #1789
Bump h5py from 3.10.0 to 3.11.0 by @dependabot in Bump h5py from 3.10.0 to 3.11.0 #1786
Bump redis from 5.0.3 to 5.0.4 by @dependabot in Bump redis from 5.0.3 to 5.0.4 #1810
Disallow untyped calls by @dstansby in Disallow untyped calls #1811
chore(ci): add numpy 2 release candidate to test matrix by @jhamman in chore(ci): add numpy 2 release candidate to test matrix #1828
deprecate(stores): add deprecation warnings to stores that we plan to remove in v3 by @jhamman in deprecate(stores): add deprecation warnings to stores that we plan to remove in v3 #1801
fix dependencies by @normanrz in fix dependencies #1840
use np.inf instead of PINF/NINF by @jhamman in use np.inf instead of PINF/NINF #1842
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #1825
Add pytest to mypy dependencies by @dstansby in Add pytest to mypy dependencies #1846
Enable ruff/bugbear rules (B) and fix issues by @DimitriPapadopoulos in Enable ruff/bugbear rules (B) and fix issues #1702
chore(pre-commit): update pre-commit versions and remove attrs dep mypy section by @jhamman in chore(pre-commit): update pre-commit versions and remove attrs dep mypy section #1848
Remove implicit groups by @jhamman in Remove implicit groups #1827
feature(store): list_* -> AsyncGenerators by @jhamman in feature(store): list_* -> AsyncGenerators #1844
Release notes for 2.18.0 by @jhamman in Release notes for 2.18.0 #1843
Update release.rst by @jhamman in Update release.rst #1850
Test codec entrypoints by @normanrz in Test codec entrypoints #1835
Remove extra v3 sync module by @maxrjones in Remove extra v3 sync module #1856
Use donfig for V3 configuration by @maxrjones in Use donfig for V3 configuration #1855
Fix any generics in zarr.array by @dstansby in Fix any generics in zarr.array #1861
Fix some untyped calls by @dstansby in Fix some untyped calls #1865
chore: update project settings per scientific python repo-review by @jhamman in chore: update project settings per scientific python repo-review #1863
Group dependabot updates by @jhamman in Group dependabot updates #1854
Disallow untyped defs by @dstansby in Disallow untyped defs #1834
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #1876
Enable some ruff rules (RUF) and fix issues by @DimitriPapadopoulos in Enable some ruff rules (RUF) and fix issues #1869
groundwork for V3 group tests by @d-v-b in groundwork for V3 group tests #1743
Add more typing to zarr.group by @dstansby in Add more typing to zarr.group #1870
[v3] First step to generalizes ndarray and bytes by @madsbk in [v3] First step to generalizes ndarray and bytes #1826
Fix a regression with scalar indexing due to Fix is_total_slice for size-1 dimensions #1800 by @dcherian in Fix a regression with scalar indexing due to #1800 #1875
release notes for 2.18.1 by @jhamman in release notes for 2.18.1 #1885
Reworked codec pipelines by @normanrz in Reworked codec pipelines #1670
Configure Ruff to apply flake8-bugbear/isort/pyupgrade by @normanrz in Configure Ruff to apply flake8-bugbear/isort/pyupgrade #1890
reset release notes by @jhamman in reset release notes #1886
chore(ci): remove mypy from test action in favor of pre-commit action by @jhamman in chore(ci): remove mypy from test action in favor of pre-commit action #1887
Enable ruff/flake8-raise rules (RSE) and fix issues by @DimitriPapadopoulos in Enable ruff/flake8-raise rules (RSE) and fix issues #1872
Apply assorted ruff/refurb rules (FURB) by @DimitriPapadopoulos in Apply assorted ruff/refurb rules (FURB) #1873
Enable ruff/flake8-implicit-str-concat rules (ISC) and fix issues by @DimitriPapadopoulos in Enable ruff/flake8-implicit-str-concat rules (ISC) and fix issues #1868
Remove some unused mypy overrides by @dstansby in Remove some unused mypy overrides #1894
Finish typing zarr.metadata by @dstansby in Finish typing zarr.metadata #1880
Followup on codecs by @normanrz in Followup on codecs #1889
Add numpy to mypy pre-commit check env by @dstansby in Add numpy to mypy pre-commit check env #1893
remove fixture files from src by @d-v-b in remove fixture files from src #1897
Protocols for Buffer and NDBuffer by @madsbk in Protocols for Buffer and NDBuffer #1899
Add zstd to old V3 supported codecs by @rabernat in Add zstd to old V3 supported codecs #1914
doc: update release notes for 2.18.2 by @jhamman in doc: update release notes for 2.18.2 #1915
[V3] Expand store tests by @d-v-b in [V3] Expand store tests #1900
[v3] Feature: Store open mode by @jhamman in [v3] Feature: Store open mode #1911
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #1920
Disallow implicit re-exports by @dstansby in Disallow implicit re-exports #1908
Make typing strict by @dstansby in Make typing strict #1879
Enable extra mypy error codes by @dstansby in Enable extra mypy error codes #1909
fix(types): Group.info -> NotImplementedError by @jhamman in fix(types): Group.info -> NotImplementedError #1936
Enable warn_unreachable for mypy by @dstansby in Enable warn_unreachable for mypy #1937
Run sphinx directly on readthedocs by @dstansby in Run sphinx directly on readthedocs #1919
Fix list of packages in mypy pre-commit environment by @dstansby in Fix list of packages in mypy pre-commit environment #1907
Bump the actions group with 6 updates by @dependabot in Bump the actions group with 6 updates #1904
Fix final typing errors by @dstansby in Fix final typing errors #1939
feature(typing): add py.typed file to package root by @jhamman in feature(typing): add py.typed file to package root #1935
Apply preview ruff rules by @DimitriPapadopoulos in Apply preview ruff rules #1942
Enable and apply ruff rule RUF009 by @DimitriPapadopoulos in Enable and apply ruff rule RUF009 #1941
Support all indexing variants by @normanrz in Support all indexing variants #1917
Feature: group and array name properties by @jhamman in Feature: group and array name properties #1940
implement .chunks on v3 arrays by @rabernat in implement .chunks on v3 arrays #1929
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #1948
Fixes bug in transpose by @normanrz in Fixes bug in transpose #1949
Buffer Prototype Argument by @madsbk in Buffer Prototype Argument #1910
Feature: Top level V3 API by @jhamman in Feature: Top level V3 API #1884
Basic working FsspecStore by @martindurant in Basic working FsspecStore #1785
doc: update release notes for 3.0.0.alpha by @jhamman in doc: update release notes for 3.0.0.alpha #1959
Update release.rst by @MSanKeys963 in Update release.rst #1960
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #1957
Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.9.0 in the actions group by @dependabot in Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.9.0 in the actions group #1969
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #1973
[v3] add json indentation to config by @d-v-b in [v3] add json indentation to config #1952
Clean up typing and docs for indexing by @brokkoli71 in Clean up typing and docs for indexing #1961
parse_shapelike allows 0 by @d-v-b in parse_shapelike allows 0 #1979
0 dim arrays: indexing by @d-v-b in 0 dim arrays: indexing #1980
[v3] Elevate codec pipeline by @d-v-b in [v3] Elevate codec pipeline #1932
Update RemoteStore.__str__ and add UPath tests by @d-v-b in Update RemoteStore.__str__ and add UPath tests #1964
Automatically generate API reference docs by @dstansby in Automatically generate API reference docs #1918
Fix doc build warnings by @dstansby in Fix doc build warnings #1985
Fix doc build by @dstansby in Fix doc build #1987
[v3] Buffer ensure correct subclass based on the BufferPrototype argument by @madsbk in [v3] Buffer ensure correct subclass based on the BufferPrototype argument #1974
Allow 'chunks' as an alias for 'chunk_shape' in array creation by @tomwhite in Allow 'chunks' as an alias for 'chunk_shape' in array creation #1991
Use f-strings instead of legacy interpolation by @DimitriPapadopoulos in Use f-strings instead of legacy interpolation #1995
Unnecessary use of a comprehension by @DimitriPapadopoulos in Unnecessary use of a comprehension #1994
Handle Path in make_store_path by @tomwhite in Handle Path in make_store_path #1992
Unnecessary comprehension by @DimitriPapadopoulos in Unnecessary comprehension #1996
Merge collapsible if statements by @DimitriPapadopoulos in Merge collapsible if statements #1999
Stop ignoring these ruff rules by @DimitriPapadopoulos in Stop ignoring these ruff rules #2001
Unnecessary comprehension by @DimitriPapadopoulos in Unnecessary comprehension #1997
Fix string interpolation by @DimitriPapadopoulos in Fix string interpolation #1998
Fix indexing with bools by @brokkoli71 in Fix indexing with bools #1968
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #1989
Bump NumPy to 2.0 by @jhamman in Bump NumPy to 2.0 #1983
build(ci): enable python 3.12 in github actions by @jhamman in build(ci): enable python 3.12 in github actions #2005
doc: copy 3.0.0.alpha changelog into release.rst by @jhamman in doc: copy 3.0.0.alpha changelog into release.rst #2007
make shardingcodec pickleable by @d-v-b in make shardingcodec pickleable #2011
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #2017
Cast fill value to array's dtype by @d-v-b in Cast fill value to array's dtype #2020
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #2039
Redundant list comprehension by @DimitriPapadopoulos in Redundant list comprehension #2048
Multiple imports for an import name by @DimitriPapadopoulos in Multiple imports for an import name #2047
Move fixtures to tests by @d-v-b in Move fixtures to tests #1813
Apply ruff/flake8-bandit rule B006 by @DimitriPapadopoulos in Apply ruff/flake8-bandit rule B006 #2049
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #2051
[v2 / v3 compat] add Group.array and data kwarg to array creation by @d-v-b in [v2 / v3 compat] add Group.array and data kwarg to array creation #2042
fix file modes by @brokkoli71 in fix file modes #2000
Use config to select implementation by @brokkoli71 in Use config to select implementation #1982
Handle missing attributes key from metadata, and other fixes by @d-v-b in Handle missing attributes key from metadata, and other fixes #2058
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #2057
Add hypothesis property tests by @dcherian in Add hypothesis property tests #1746
Fix low contrast in dark theme h3 headings by @dstansby in Fix low contrast in dark theme h3 headings #2003
Updated test dependencies in pyproject.toml by @TomAugspurger in Updated test dependencies in pyproject.toml #2069
Remove zstandard dependency in favor of numcodecs by @normanrz in Remove zstandard dependency in favor of numcodecs #1838
Update TEAM.md by @jhamman in Update TEAM.md #2071
Enforce ruff/tryceratops rules (TRY) by @DimitriPapadopoulos in Enforce ruff/tryceratops rules (TRY) #2054
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #2080
[v2] Fix doctests with numpy 2.0 by @dstansby in [v2] Fix doctests with numpy 2.0 #2073
Fix version number in built docs by @dstansby in Fix version number in built docs #2044
[v3] reorganize package - move most modules to zarr.core by @jhamman in [v3] reorganize package - move most modules to zarr.core #2072
Fix orthogonal indexing with a scalar by @dcherian in Fix orthogonal indexing with a scalar #1947
Re-enable dependabot on main branch by @dstansby in Re-enable dependabot on main branch #2082
Stateful store tests by @e-marshall in Stateful store tests #2070
Bump the requirements group across 1 directory with 7 updates by @dependabot in Bump the requirements group across 1 directory with 7 updates #2092
Bump the actions group with 2 updates by @dependabot in Bump the actions group with 2 updates #2087
[v2] Drop support for Python 3.9 by @dstansby in [v2] Drop support for Python 3.9 #2074
Fix Array.array for numpy 2.1 by @dstansby in Fix Array.__array__ for numpy 2.1 #2106
Bump test version of numcodecs by @dstansby in Bump test version of numcodecs #2114
fix: numpy 1.24 compat for Array.array by @jhamman in fix: numpy 1.24 compat for Array.__array__ #2123
Fixed MemoryStore.list_dir by @TomAugspurger in Fixed MemoryStore.list_dir #2117
Deprecate N5Store by @jhamman in Deprecate N5Store #2103
Run tests on numpy 1.23 by @dstansby in Run tests on numpy 1.23 #2124
Bump the requirements group across 1 directory with 3 updates by @dependabot in Bump the requirements group across 1 directory with 3 updates #2129
chore: bump minimum numpy version to 1.24 by @jhamman in chore: bump minimum numpy version to 1.24 #2127
Feature/recursive members by @TomAugspurger in Feature/recursive members #2118
Remove un-needed package installs in CI by @dstansby in Remove un-needed package installs in CI #2095
Fix dtype type error by @dstansby in Fix dtype type error #2136
mypy fixes for NumPy 2.1.0 by @TomAugspurger in mypy fixes for NumPy 2.1.0 #2139
Initial GPU support by @akshaysubr in Initial GPU support #1967
[v3] clean up create_array signatures in group/asyncgroup classes by @jhamman in [v3] clean up create_array signatures in group/asyncgroup classes #2132
Bump the actions group with 2 updates by @dependabot in Bump the actions group with 2 updates #2146
Bump pypa/gh-action-pypi-publish from 1.9.0 to 1.10.0 in the actions group by @dependabot in Bump pypa/gh-action-pypi-publish from 1.9.0 to 1.10.0 in the actions group #2147
Bump ruff version by @DimitriPapadopoulos in Bump ruff version #2148
Bump numpy from 2.1.0 to 2.1.1 in the requirements group by @dependabot in Bump numpy from 2.1.0 to 2.1.1 in the requirements group #2151
[v3] h5py compat methods on Group by @jhamman in [v3] h5py compat methods on Group #2128
chore(docs): update release notes ahead of 2.18.4 by @jhamman in chore(docs): update release notes ahead of 2.18.4 #2152
Enforce Repo-Review rules by @DimitriPapadopoulos in Enforce Repo-Review rules #2075
Enforce ruff/flake8-type-checking rules (TCH) by @DimitriPapadopoulos in Enforce ruff/flake8-type-checking rules (TCH) #2110
Add UPath dependency/type checking by @dstansby in Add UPath dependency/type checking #1955
Check tests folder with mypy by @TomAugspurger in Check tests folder with mypy #2150
Fix new ruff/flake8-type-checking TCH003 error by @DimitriPapadopoulos in Fix new ruff/flake8-type-checking TCH003 error #2154
Autogenerate all API docs by @dstansby in Autogenerate all API docs #2002
Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 in the actions group by @dependabot in Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 in the actions group #2161
Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 in the actions group by @dependabot in Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 in the actions group #2160
Ensure that store_dict used for empty dicts by @TomAugspurger in Ensure that store_dict used for empty dicts #2162
[docs] remove primary sidebar from tutorial by @sneakers-the-rat in [docs] remove primary sidebar from tutorial #2142
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #2165
Fixed test warnings by @TomAugspurger in Fixed test warnings #2168
Fixed path segment duplication in open_array by @TomAugspurger in Fixed path segment duplication in open_array #2167
Simplify mypy config for tests by @dstansby in Simplify mypy config for tests #2156
Bump pytest from 8.3.2 to 8.3.3 in the requirements group by @dependabot in Bump pytest from 8.3.2 to 8.3.3 in the requirements group #2172
Accept dictionaries for store argument by @TomAugspurger in Accept dictionaries for store argument #2164
refactor: split metadata into v2 and v3 modules by @d-v-b in refactor: split metadata into v2 and v3 modules #2163
More typing fixes for tests by @dstansby in More typing fixes for tests #2173
feature(store): V3 ZipStore by @jhamman in feature(store): V3 ZipStore #2078
test: check that store, array, and group classes are serializable by @jhamman in test: check that store, array, and group classes are serializable #2006
fix: opening a group with unspecified format finds either v2 or v3 by @jhamman in fix: opening a group with unspecified format finds either v2 or v3 #2183
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #2188
fix: replace tests that went missing in test: check that store, array, and group classes are serializable #2006 by @jhamman in fix: replace tests that went missing in #2006 #2192
Silence hypothesis complex warning by @dcherian in Silence hypothesis complex warning #2157
Narrow JSON type, ensure that to_dict always returns a dict, and v2 filter / compressor parsing by @d-v-b in Narrow JSON type, ensure that to_dict always returns a dict, and v2 filter / compressor parsing #2179
Fixed codec for v2 data with no fill value by @TomAugspurger in Fixed codec for v2 data with no fill value #2207
implement store.list_prefix and store._set_many by @d-v-b in implement store.list_prefix and store._set_many #2064
[v3] Implement Group methods for empty, full, ones, and zeros by @lindseynield in [v3] Implement Group methods for empty, full, ones, and zeros #2210
Make MemoryStore serializable by @TomAugspurger in Make MemoryStore serializable #2204
Default to RemoteStore for fsspec URIs by @TomAugspurger in Default to RemoteStore for fsspec URIs #2198
Typing fixes for test_indexing by @dstansby in Typing fixes for test_indexing #2193
Make Group.arrays, groups compatible with v2 by @TomAugspurger in Make Group.arrays, groups compatible with v2 #2213
Basic Zarr-python 2.x compatibility changes by @TomAugspurger in Basic Zarr-python 2.x compatibility changes #2098
fix typo in store integration test by @dcherian in fix typo in store integration test #2223
fix: validate v3 dtypes when loading/creating v3 metadata by @jhamman in fix: validate v3 dtypes when loading/creating v3 metadata #2209
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #2222
Added Attributes.asdict by @TomAugspurger in Added Attributes.asdict #2221
Bump pypa/gh-action-pypi-publish from 1.10.1 to 1.10.2 in the actions group by @dependabot in Bump pypa/gh-action-pypi-publish from 1.10.1 to 1.10.2 in the actions group #2219
Bump pypa/gh-action-pypi-publish from 1.10.1 to 1.10.2 in the actions group by @dependabot in Bump pypa/gh-action-pypi-publish from 1.10.1 to 1.10.2 in the actions group #2220
Fix/empty listdir by @jhamman in Fix/empty listdir #2225
remove outdated v2 source code and tests from v3 branch by @jhamman in remove outdated v2 source code and tests from v3 branch #2182
fix: selection with zarr arrays by @jhamman in fix: selection with zarr arrays #2137
Adding Deepak and Tom to the core team by @jhamman in Adding Deepak and Tom to the core team #2227
Apply and enforce more ruff rules by @DimitriPapadopoulos in Apply and enforce more ruff rules #2053
Update V2 codec pipeline to use concrete classes by @TomAugspurger in Update V2 codec pipeline to use concrete classes #2244
Fix fill_value handling for complex dtypes by @dcherian in Fix fill_value handling for complex dtypes #2200
Enforce ruff/flynt rules (FLY) by @DimitriPapadopoulos in Enforce ruff/flynt rules (FLY) #2240
Enforce ruff/flake8-return rules (RET) by @DimitriPapadopoulos in Enforce ruff/flake8-return rules (RET) #2237
Fix multiple identical imports by @DimitriPapadopoulos in Fix multiple identical imports #2241
Enforce ruff/flake8-pytest-style rules (PT) by @DimitriPapadopoulos in Enforce ruff/flake8-pytest-style rules (PT) #2236
Replace Gitter link with Zulip by @MSanKeys963 in Replace Gitter link with Zulip #2254
Use map(str, *) in test_accessed_chunks by @jakirkham in Use map(str, *) in test_accessed_chunks #2229
Enforce ruff/flake8-comprehensions rules (C4) by @DimitriPapadopoulos in Enforce ruff/flake8-comprehensions rules (C4) #2239
Remove unnecessary lambda expression by @DimitriPapadopoulos in Remove unnecessary lambda expression #2260
No need to run DeepSource any more - we use ruff by @DimitriPapadopoulos in No need to run DeepSource any more - we use ruff #2261
Apply ruff/flake8-annotations rule ANN204 by @DimitriPapadopoulos in Apply ruff/flake8-annotations rule ANN204 #2258
Add array storage helpers by @d-v-b in Add array storage helpers #2065
Apply assorted ruff/flake8-simplify rules (SIM) by @DimitriPapadopoulos in Apply assorted ruff/flake8-simplify rules (SIM) #2259
feature(store): add LoggingStore wrapper by @jhamman in feature(store): add LoggingStore wrapper #2231
chore(deps): drop support for python 3.10 and numpy 1.24 by @jhamman in chore(deps): drop support for python 3.10 and numpy 1.24 #2217
fix(async): set default concurrency to 10 tasks by @jhamman in fix(async): set default concurrency to 10 tasks #2256
feat: metadata-only support for storage transformers metadata by @d-v-b in feat: metadata-only support for storage transformers metadata #2180
Default zarr.open to open_group if shape is not provided by @agoodm in Default zarr.open to open_group if shape is not provided #2158
Generalize stateful store test by @dcherian in Generalize stateful store test #2202
Enforce ruff/flake8-annotations rules (ANN) by @DimitriPapadopoulos in Enforce ruff/flake8-annotations rules (ANN) #2264
Added a new issue template for documentation issues by @MSanKeys963 in Added a new issue template for documentation issues #2255
Apply new ruff rules (preview mode) by @DimitriPapadopoulos in Apply new ruff rules (preview mode) #2235
Ensure parents are created when creating a node by @TomAugspurger in Ensure parents are created when creating a node #2262
Allow mode casting for Stores by @TomAugspurger in Allow mode casting for Stores #2249
Bump verison of autoapi used to build docs by @dstansby in Bump verison of autoapi used to build docs #2177
Bump the actions group across 1 directory with 2 updates by @dependabot in Bump the actions group across 1 directory with 2 updates #2257
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #2277
[v3] fix: zarr v2 compatibility fixes for Dask by @jhamman in [v3] fix: zarr v2 compatibility fixes for Dask #2186
Bump the requirements group across 1 directory with 3 updates by @dependabot in Bump the requirements group across 1 directory with 3 updates #2284
Fix low contrast box titles by @dstansby in Fix low contrast box titles #2287
Bump pymongo from 4.10.0 to 4.10.1 in the requirements group by @dependabot in Bump pymongo from 4.10.0 to 4.10.1 in the requirements group #2288
Backport Fix low contrast box titles #2287 to main by @dstansby in Backport #2287 to main #2292
Ignore extra keys in v2 metadata by @TomAugspurger in Ignore extra keys in v2 metadata #2297
Remove acknowledgements page from docs by @dstansby in Remove acknowledgements page from docs #2293
Add maximum character length for signatures in docs by @dstansby in Add maximum character length for signatures in docs #2299
Change ArrayV3Metadata.data_type to DataType by @rabernat in Change ArrayV3Metadata.data_type to DataType #2278
Add BaseCodec to the docs by @dstansby in Add BaseCodec to the docs #2290
Bump pypa/gh-action-pypi-publish from 1.10.2 to 1.10.3 in the actions group by @dependabot in Bump pypa/gh-action-pypi-publish from 1.10.2 to 1.10.3 in the actions group #2305
Bump pypa/gh-action-pypi-publish from 1.10.2 to 1.10.3 in the actions group by @dependabot in Bump pypa/gh-action-pypi-publish from 1.10.2 to 1.10.3 in the actions group #2304
fix: array creation prototype by @jhamman in fix: array creation prototype #2306
base64 encode fill value for some dtypes with zarr_format=2 by @TomAugspurger in base64 encode fill value for some dtypes with zarr_format=2 #2286
Bump the requirements group with 2 updates by @dependabot in Bump the requirements group with 2 updates #2303
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #2307
Add string and bytes dtypes plus vlen-utf8 and vlen-bytes codecs by @rabernat in Add string and bytes dtypes plus vlen-utf8 and vlen-bytes codecs #2036
fix: add get(key, default) method to Group APIs by @jhamman in fix: add get(key, default) method to Group APIs #2311
fix(storage): change StoreTests get/set methods to async by @jhamman in fix(storage): change StoreTests get/set methods to async #2313
fix(store): speed up Store.open by avoiding empty/clear calls unless needed by @jhamman in fix(store): speed up Store.open by avoiding empty/clear calls unless needed #2314
Keyword argument defined before variable positional arguments by @DimitriPapadopoulos in Keyword argument defined before variable positional arguments #2321
Assigning the same variable to itself by @DimitriPapadopoulos in Assigning the same variable to itself #2320
Apply ruff rules (RUF) by @DimitriPapadopoulos in Apply ruff rules (RUF) #2319
Unnecessary lambda expression by @DimitriPapadopoulos in Unnecessary lambda expression #2318
Add some numpydoc validation checks by @dstansby in Add some numpydoc validation checks #2316
Use implicit fill values for zarr v2 by @TomAugspurger in Use implicit fill values for zarr v2 #2274
zarr.open should fall back to opening a group by @TomAugspurger in zarr.open should fall back to opening a group #2310
Bump numcodecs from 0.13.0 to 0.13.1 in the requirements group by @dependabot in Bump numcodecs from 0.13.0 to 0.13.1 in the requirements group #2326
Refactor/rename v2 metadata fields by @d-v-b in Refactor/rename v2 metadata fields #2301
Zarr-v3 Consolidated Metadata by @TomAugspurger in Zarr-v3 Consolidated Metadata #2113
feature(threading): use explicit/configurable thread pool executor by @jhamman in feature(threading): use explicit/configurable thread pool executor #2327
fix(RemoteStore): avoid listing all objects in remote store in empty() method by @jhamman in fix(RemoteStore): avoid listing all objects in remote store in empty() method #2312
fix(attrs): update array attrs in place by @jhamman in fix(attrs): update array attrs in place #2329
Use horizontal logo for docs by @dstansby in Use horizontal logo for docs #2333
Special case str dtype in array creation by @TomAugspurger in Special case str dtype in array creation #2323
Add guide section to top level of docs by @dstansby in Add guide section to top level of docs #2332
Ensure path created for LocalStore when not in readonly mode. by @TomAugspurger in Ensure path created for LocalStore when not in readonly mode. #2337
V3 main sync w/ merge by @jhamman in V3 main sync w/ merge #2335
Revert "V3 main sync w/ merge (V3 main sync w/ merge #2335)" by @jhamman in Revert "V3 main sync w/ merge (#2335)" #2339
V3 main sync merge by @jhamman in V3 main sync merge #2340
document storage classes and some developer apis by @jhamman in document storage classes and some developer apis #2279
Fix/logging store improvements by @jhamman in Fix/logging store improvements #2355
fix RemoteStore.empty by @rabernat in fix RemoteStore.empty #2343
fix(consolidated metadata): skip .zmetadata key in members search by @jhamman in fix(consolidated metadata): skip .zmetadata key in members search #2356
Update deprecated stage names by @DimitriPapadopoulos in Update deprecated stage names #2362
Multiple imports for an import name by @DimitriPapadopoulos in Multiple imports for an import name #2361
Fix logo height in doc navbar by @dstansby in Fix logo height in doc navbar #2352
Bump sphinx from 8.0.2 to 8.1.3 in the actions group across 1 directory by @dependabot in Bump sphinx from 8.0.2 to 8.1.3 in the actions group across 1 directory #2360
Move V3 development to main by @jhamman in Move V3 development to main #2341
test(ci): change branch name in v3 workflows by @jhamman in test(ci): change branch name in v3 workflows #2368
Use lazy % formatting in logging functions by @DimitriPapadopoulos in Use lazy % formatting in logging functions #2366
Move roadmap and v3-design documument to docs by @jhamman in Move roadmap and v3-design documument to docs #2354
Multiple imports for an import name by @DimitriPapadopoulos in Multiple imports for an import name #2367
Enforce ruff/pycodestyle warnings (W) by @DimitriPapadopoulos in Enforce ruff/pycodestyle warnings (W) #2369
Enforce ruff/pycodestyle preview rules (E) by @DimitriPapadopoulos in Enforce ruff/pycodestyle preview rules (E) #2370
Fix typo by @DimitriPapadopoulos in Fix typo #2382
Imported name is not used anywhere in the module by @DimitriPapadopoulos in Imported name is not used anywhere in the module #2379
Missing mandatory keyword argument shape by @DimitriPapadopoulos in Missing mandatory keyword argument shape #2376
Update ruff rules to ignore by @DimitriPapadopoulos in Update ruff rules to ignore #2374
Docstrings for arraymodule by @e-marshall in Docstrings for arraymodule #2276
fix/normalize storage paths by @d-v-b in fix/normalize storage paths #2384
Enforce ruff/flake8-pyi rule PYI013 by @DimitriPapadopoulos in Enforce ruff/flake8-pyi rule PYI013 #2389
deps: remove fasteners from list of dependencies by @jhamman in deps: remove fasteners from list of dependencies #2386
Enforce ruff/flake8-annotations rule ANN003 by @DimitriPapadopoulos in Enforce ruff/flake8-annotations rule ANN003 #2388
Enforce ruff/Perflint rules (PERF) by @DimitriPapadopoulos in Enforce ruff/Perflint rules (PERF) #2372
chore: update package maintainers by @jhamman in chore: update package maintainers #2387
Fixed consolidated Group getitem with multi-part key by @TomAugspurger in Fixed consolidated Group getitem with multi-part key #2363
chore: add python 3.13 to ci / pyproject.toml by @jhamman in chore: add python 3.13 to ci / pyproject.toml #2385
move v3/tests to tests by @d-v-b in move v3/tests to tests #2396
Fix reading partial shards by @normanrz in Fix reading partial shards #2397
sharding with empty inner chunk and index location start by @brokkoli71 in sharding with empty inner chunk and index location start #2336
Add some more numpydoc rules/associated fixes by @dstansby in Add some more numpydoc rules/associated fixes #2399
Enforce ruff/refurb rules (FURB) by @DimitriPapadopoulos in Enforce ruff/refurb rules (FURB) #2373
chore(ci): removed unused codeql action by @jhamman in chore(ci): removed unused codeql action #2414
fix(group): deprecate positional args in Group.{zeros,ones,etc.} by @jhamman in fix(group): deprecate positional args in Group.{zeros,ones,etc.} #2416
Get rid of pep8speaks - replaced by ruff by @DimitriPapadopoulos in Get rid of pep8speaks - replaced by ruff #2421
test(ci): add test environment for upstream dependencies by @jhamman in test(ci): add test environment for upstream dependencies #2418
fix(array): thread order parameter through to Array.init by @jhamman in fix(array): thread order parameter through to Array.__init__ #2417
test(ci): Add CI for minimum supported dependency versions by @jhamman in test(ci): Add CI for minimum supported dependency versions #2423
fix(remotestore): raise error if path includes scheme by @jhamman in fix(remotestore): raise error if path includes scheme #2348
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #2427
[v3] Array.append by @jhamman in [v3] Array.append #2413
Fix JSON encoding of complex fill values by @dcherian in Fix JSON encoding of complex fill values #2432
support zero-sized chunks by @brokkoli71 in support zero-sized chunks #2434
Refactors v2 codec handling by @normanrz in Refactors v2 codec handling #2425
feature(group): add group setitem api by @jhamman in feature(group): add group setitem api #2393
test(ci): test on windows and osx by @jhamman in test(ci): test on windows and osx #2431
Bump sphinx-autoapi from 3.3.2 to 3.3.3 in the requirements group by @dependabot in Bump sphinx-autoapi from 3.3.2 to 3.3.3 in the requirements group #2441
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #2443
Bump pypa/gh-action-pypi-publish from 1.10.3 to 1.11.0 in the actions group by @dependabot in Bump pypa/gh-action-pypi-publish from 1.10.3 to 1.11.0 in the actions group #2457
Make AsyncArray.nchunks_initialized async by @TomAugspurger in Make AsyncArray.nchunks_initialized async #2449
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #2462
Feature: store learns to delete prefixes when overwriting/creating hierarchy nodes by @jhamman in Feature: store learns to delete prefixes when overwriting/creating hierarchy nodes #2430
Move BatchedCodecPipeline to zarr.core by @normanrz in Move BatchedCodecPipeline to zarr.core #2086
Apply assorted ruff/Pylint rules (PLR) by @DimitriPapadopoulos in Apply assorted ruff/Pylint rules (PLR) #2371
Zarr.save argument check by @brokkoli71 in Zarr.save argument check #2446
Add more ruff rules by @DimitriPapadopoulos in Add more ruff rules #2460
AsyncGenerator should not yield None by @DimitriPapadopoulos in AsyncGenerator should not yield None #2464
use as_posix correctly for str and for listdir by @d-v-b in use as_posix correctly for str and for listdir #2467
Missing mandatory keyword argument by @DimitriPapadopoulos in Missing mandatory keyword argument #2465
Remove useless {...!s} by @DimitriPapadopoulos in Remove useless {...!s} #2471
Add docstrings for array module by @MSanKeys963 in Add docstrings for array module #2281
AsyncGenerator → AsyncIterator by @DimitriPapadopoulos in AsyncGenerator → AsyncIterator #2381
Bump pypa/gh-action-pypi-publish from 1.11.0 to 1.12.2 in the actions group by @dependabot in Bump pypa/gh-action-pypi-publish from 1.11.0 to 1.12.2 in the actions group #2479
Stateful tests for array/group manipulation by @dcherian in Stateful tests for array/group manipulation #2189
Added info for Group and Array by @TomAugspurger in Added info for Group and Array #2400
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #2482
Explicitly clear store in hypothesis strategy by @dcherian in Explicitly clear store in hypothesis strategy #2481
Assorted small fixes for f-strings by @DimitriPapadopoulos in Assorted small fixes for f-strings #2477
Unreachable code by @DimitriPapadopoulos in Unreachable code #2483
Refactor: store mode and initialization by @jhamman in Refactor: store mode and initialization #2442
Added Group.tree method by @TomAugspurger in Added Group.tree method #2433
Bump numcodecs by @normanrz in Bump numcodecs #2488
Added Store.getsize by @TomAugspurger in Added Store.getsize #2426
fix open_array for mode r+ by @d-v-b in fix open_array for mode r+ #2494
don't normalize paths in StorePath.delete_dir by @d-v-b in don't normalize paths in StorePath.delete_dir #2493
handle empty string prefix in zipstore delete dir by @d-v-b in handle empty string prefix in zipstore delete dir #2492
Add documentation for zarr.core.group by @brokkoli71 in Add documentation for zarr.core.group #2452
Add CZI Badge to README by @MSanKeys963 in Add CZI Badge to README #2489
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #2502
[v3] Import crc32c through numcodecs by @normanrz in [v3] Import crc32c through numcodecs #2510
Remove asciitree dependency by @normanrz in Remove asciitree dependency #2511
Refactor/narrow array name type by @d-v-b in Refactor/narrow array name type #2499
chore: update pre-commit hooks by @pre-commit-ci in chore: update pre-commit hooks #2517
Multiple imports for an import name by @DimitriPapadopoulos in Multiple imports for an import name #2504
Added Array.info_complete by @TomAugspurger in Added Array.info_complete #2514
Fix iterating over sharding index by @brokkoli71 in Fix iterating over sharding index #2392
Imported name is not used anywhere in the module by @DimitriPapadopoulos in Imported name is not used anywhere in the module #2520
Update ruff and associated changes by @DimitriPapadopoulos in Update ruff and associated changes #2522
[v3] Makes data contiguous in v2 codec by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2515
Error when attempting to set with an array of incompatible shape. by @dcherian in https://github.com/zarr-developers/zarr-python/pull/2512
Bump sphinx-autoapi from 3.3.3 to 3.4.0 in the actions group by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2525
zarr.store → zarr.storage by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2523
Move stateful tests to public testing API by @dcherian in https://github.com/zarr-developers/zarr-python/pull/2531
add a complete step to the test CI by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2521
DOC: Proposed updates to contributor guide. by @rossbar in https://github.com/zarr-developers/zarr-python/pull/2513
Parse chunk shape to check for float values by @faymanns in https://github.com/zarr-developers/zarr-python/pull/2535
chore(deps): make fsspec and upath optional dependencies by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2534
[v3] implement / deprecate zarr.tree by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2537
Improve installation page by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2538
chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2547
Improve pre-commit configuration by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2551
Apply ruff preview rule RUF036 by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2524
rename exists_ok to overwrite by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2548
Feat/latency store by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2474
rename RemoteStore -> FsspecStore by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2557
Bump pypa/gh-action-pypi-publish from 1.12.2 to 1.12.3 in the actions group by @dependabot in https://github.com/zarr-developers/zarr-python/pull/2562
Clean up optional dependency groups by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2541
add warnings when using non-spec features with v3 by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2556
Shorten contributing page title by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2565
Remove specs pages from docs by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2555
Trim trailing whitespace using pre-commit by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2563
Remove config warning if only one implementation exists by @brokkoli71 in https://github.com/zarr-developers/zarr-python/pull/2571
Remove license page from docs by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2570
docs/add docstrings to synchronous API by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2549
deps: add packaging to required deps by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2573
correct array.nbytes, and add tests by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2576
Add default compressors to config by @brokkoli71 in https://github.com/zarr-developers/zarr-python/pull/2470
Remove temporary doc specific to branch V3 by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2578
Feat/write empty chunks by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2429
Multiple imports for an import name by @DimitriPapadopoulos in https://github.com/zarr-developers/zarr-python/pull/2580
test and fix indexing for scalar arrays by @brokkoli71 in https://github.com/zarr-developers/zarr-python/pull/2583
Un-mark memory store as "for testing" by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2601
remove test.py by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2612
Note that whole directories can be deleted in LocalStore by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2606
fix: run-coverage command now tracks src directory by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2615
Don't document zarr.codec submodules by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2605
Improve deprecation of zarr.creation and zarr.convenience by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2609
top-level functions for reading, creating data by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2463
Improve docstrings of zarr.api.synchronous by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2610
Improve exception docs by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2624
docs: split tutorial into multiple user guide sections by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2589
show pprint import by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2632
Fix open(..., mode='w') to create a group by @jni in https://github.com/zarr-developers/zarr-python/pull/2629
Clean up public store API by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2603
docs: add migration page to user guide by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2596
Move 'about' to end of table of contents by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2636
docs: replace getting_started page with quickstart by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2590
docs: consolidate developer docs + update contributing page for v3 by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2593
docs: update doc homepage by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2594
Fix create_dataset with data kwarg by @jni in https://github.com/zarr-developers/zarr-python/pull/2638
Align lines for improved rendering by @rtobar in https://github.com/zarr-developers/zarr-python/pull/2648
Adds documentation for sharding and sharding in Array.info by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2644
Move deprecation notices to the top of docstrings by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2637
Improve API reference doc structure by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2635
Consistent use of 'Zarr format 2 or 3' by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2645
Adds filters, compressors and serializer props to Array by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2652
Don't draw invalid shapes in test_vindex by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2651
Separate defaults for filters, serializers and compressors in v3 by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2653
Add moto[server] to test deps for FsspecStore by @maxrjones in https://github.com/zarr-developers/zarr-python/pull/2657
chore: update pre-commit hooks by @pre-commit-ci in https://github.com/zarr-developers/zarr-python/pull/2660
Zarr v2 + Zstd: Don't persist the checksum param if false by @normanrz in https://github.com/zarr-developers/zarr-python/pull/2655
Feat/concurrent members by @d-v-b in https://github.com/zarr-developers/zarr-python/pull/2519
Fix Group.array() with data argument by @tomwhite in https://github.com/zarr-developers/zarr-python/pull/2668
Make make_store_path private by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2628
add known bugs to work in progress section of the v3 migration guide by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2670
Fix json indent by @will-moore in https://github.com/zarr-developers/zarr-python/pull/2546
fix: threadpool configuration by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2671
api: hide zarr.core from api docs by @jhamman in https://github.com/zarr-developers/zarr-python/pull/2669
Clean up release notes in preparation for v3 by @dstansby in https://github.com/zarr-developers/zarr-python/pull/2634
Use dataclasses for ByteRangeRequests by @maxrjones in https://github.com/zarr-developers/zarr-python/pull/2585

New Contributors

@JackKelly made their first contribution in Tiny tweak: Extend copyright notice to 2023 #1528
@ziw-liu made their first contribution in Preserve dimension separator metadata when resizing arrays #1540
@rossbar made their first contribution in DOC: Minor tweak to advanced indexing example in tutorial #1550
@ph03 made their first contribution in Cache result of FSStore._fsspec_installed() #1581
@jeffpeck10x made their first contribution in Update tutorial.rst to include section about accessing Zip Files on S3 #1615
@maxrjones made their first contribution in Add env variables to sprint setup instructions #1654
@hoodmane made their first contribution in Pyodide support: don't require fasteners on emscripten #1663
@DahnJ made their first contribution in docs(tutorial.rst): fix link to GCSMap #1689
@dcherian made their first contribution in Override ipython repr methods. #1724
@itcarroll made their first contribution in Make sure fs exceptions are raised if not MissingFs exceptions (clone) #1604
@aldenks made their first contribution in Development installation/contributing docs updates #1643
@Charoula-Kyriakides made their first contribution in implement __eq__ for LocalStore #1792
@brokkoli71 made their first contribution in Clean up typing and docs for indexing #1961
@e-marshall made their first contribution in Stateful store tests #2070
@akshaysubr made their first contribution in Initial GPU support #1967
@sneakers-the-rat made their first contribution in [docs] remove primary sidebar from tutorial #2142
@lindseynield made their first contribution in [v3] Implement Group methods for empty, full, ones, and zeros #2210
@agoodm made their first contribution in Default zarr.open to open_group if shape is not provided #2158
@rtobar made their first contribution in https://github.com/zarr-developers/zarr-python/pull/2648
@will-moore made their first contribution in https://github.com/zarr-developers/zarr-python/pull/2546

Full Changelog: v2.16.1...v3.0.0

This discussion was created from the release v3.0.0.

Replies: 1 comment

sneakers-the-rat
Jan 13, 2025

Gratz on the big release y'all ♥

0 replies

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