results for main analysis

Author: xpolak37

analysis/results/merged_sites/main_analysis/Q1/alpha_diversity/alpha_diversity_results_colon.xlsx

@@ -0,0 +1,7 @@
+"","alpha","lambda","auc","auc_czech","auc_no","auc_optimism_corrected","auc_optimism_corrected_CIL","auc_optimism_corrected_CIU","accuracy","accuracy_czech","accuracy_no","accuracy_optimism_corrected","accuracy_optimism_corrected_CIL","accuracy_optimism_corrected_CIU"
+"pre_ltx vs healthy ASV colon",0.2,0.0072857117160636,1,1,1,0.944482930499984,0.87948333691419,0.986503241327931,1,NA,1,0.872590474869007,0.773863933426281,0.937692307692308
+"pre_ltx vs post_ltx ASV colon",1,0.00442418625684354,0.999667621776504,0.999656593406593,0.999522640480087,0.788320408051093,0.715647772726993,0.842743982749439,0.993322203672788,NA,0.994269340974212,0.725877580419151,0.65708038661009,0.769266055045872
+"post_ltx vs healthy ASV colon",0.4,0.00203662030856671,1,1,1,0.969306139763817,0.937058510930714,0.986695895456473,1,NA,1,0.913530515264129,0.864511546920821,0.951417936901808
+"pre_ltx vs healthy genus colon",0,0.0426283521875951,0.999552795031056,0.999749373433584,0.999271561771562,0.934204912494078,0.881699288731225,0.971853213677344,0.987834549878346,NA,0.989051094890511,0.858344818780767,0.79082492302429,0.922841191066998
+"pre_ltx vs post_ltx genus colon",0,0.0518169532246998,0.969965714285714,0.958874458874459,0.964470812875068,0.757469171091129,0.676367509966679,0.833103630803109,0.91,NA,0.905444126074499,0.695499148409398,0.615042135659143,0.771375304058379
+"post_ltx vs healthy genus colon",0.6,0.00224593144535808,1,1,1,0.961311371765204,0.923354885057471,0.985361057539731,1,NA,1,0.892756666917255,0.83885617836395,0.940785775875834

analysis/results/merged_sites/main_analysis/Q1/alpha_diversity/alpha_diversity_results_terminal_ileum.xlsx

@@ -0,0 +1,7 @@
+"","alpha","lambda","auc","auc_czech","auc_no","auc_optimism_corrected","auc_optimism_corrected_CIL","auc_optimism_corrected_CIU","accuracy","accuracy_czech","accuracy_no","accuracy_optimism_corrected","accuracy_optimism_corrected_CIL","accuracy_optimism_corrected_CIU"
+"pre_ltx vs healthy ASV terminal_ileum",0.4,0.0256910008899671,1,1,1,0.95629378813055,0.894090288445127,0.995514274518585,1,NA,1,0.882481023405614,0.780863636363636,0.96
+"pre_ltx vs post_ltx ASV terminal_ileum",0.2,0.129232751813871,0.996790890269151,0.997957516339869,0.996980676328502,0.864518744479215,0.785276694173543,0.931816093832783,0.927884615384615,NA,0.951219512195122,0.822059734612514,0.733333333333333,0.892493975903614
+"post_ltx vs healthy ASV terminal_ileum",0.2,0.0479970106836323,1,1,1,0.957999611947639,0.899991750394011,0.989777809399902,1,NA,1,0.893834968387856,0.82118018967334,0.960288697788698
+"pre_ltx vs healthy genus terminal_ileum",0.2,0.0398444834950226,1,1,1,0.965822389402721,0.915755208333333,0.995689655172414,1,NA,1,0.897547984611644,0.807692307692308,0.971411387329591
+"pre_ltx vs post_ltx genus terminal_ileum",0,0.667401162895864,0.972670807453416,0.961601307189543,0.980072463768116,0.834470885536606,0.748780278342445,0.915447324414716,0.865384615384615,NA,0.878048780487805,0.778869831652333,0.697368421052632,0.851614114114114
+"post_ltx vs healthy genus terminal_ileum",0,0.0709772218577769,1,1,1,0.965666112558471,0.922003406141868,0.993864511404059,1,NA,1,0.90031834116069,0.828009259259259,0.960545454545454