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Thank you for your package! I was wondering how it is possible to get the aligned peak list from the mSet object?
I realize that it is possible to get the unaligned peak list via:
mSet@peakpicking[["chromPeaks"]]
which is in my understanding equivalent to:
xcms::chromPeaks(XCMSnExp_object)
However, what is the mSet equivalent to:
feature_defs <- xcms::featureDefinitions(XCMSnExp_object)
feature_areas <- xcms::featureValues(XCMSnExp_object, value = "into")
df <- merge(feature_defs, feature_areas, by=0, all=TRUE)
df <- df[,!(names(df) %in% c("peakidx"))]
?
Thank you and best wishes,
Yasin
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