crest4/MANIFEST.in at master · xapple/crest4 · GitHub

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# Always include top-level docs/config #
include README.md

# Keep the pytest rules #
include crest4/tests/pytest.ini

# Include all FASTA files anywhere #
global-include *.fasta

# Keep specific test assets #
include crest4/tests/precomputed_hits/precomputed.hits
include crest4/tests/with_otu_table/otu_table_bad.tsv
include crest4/tests/with_otu_table/otu_table_good.tsv
include crest4/tests/custom_database/custom/custom.fasta
include crest4/tests/custom_database/custom/custom.map
include crest4/tests/custom_database/custom/custom.names
include crest4/tests/custom_database/custom/custom.tre
include crest4/tests/custom_database/other_database/custom.fasta
include crest4/tests/custom_database/other_database/custom.map
include crest4/tests/custom_database/other_database/custom.names
include crest4/tests/custom_database/other_database/custom.tre

# Exclude bulky test datasets from the distribution #
exclude crest4/tests/gio_hundred_seqs/*
exclude crest4/tests/hmp_mock_dataset/*
exclude crest4/tests/long_otus_confident/*

# Clean up caches #
prune .pytest_cache