Hi,
Following the install procedure I've run, on a GPU node, an annotation test. But I get warnings about missing libraries : libnvinfer.so.7, libnvinfer_plugin.so.7. And when I monitor the server, the job seems to run only on CPU.
What should I do to fix this?
singularity run --nv helixer-docker_helixer_v0.3.1_cuda_11.2.0-cudnn8.sif Helixer.py --fasta-path my.fasta --lineage land_plant --gff-output-path my.gff3
2023-03-13 16:06:09.959811: I tensorflow/core/platform/cpu_feature_guard.cc:193] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 AVX512F AVX512_VNNI FMA
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
2023-03-13 16:06:10.359479: I tensorflow/core/util/port.cc:104] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable TF_ENABLE_ONEDNN_OPTS=0.
2023-03-13 16:06:12.183775: W tensorflow/compiler/xla/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'libnvinfer.so.7'; dlerror: libnvinfer.so.7: cannot open shared object file: No such file or directory; LD_LIBRARY_PATH: /usr/local/nvidia/lib:/usr/local/nvidia/lib64:/.singularity.d/libs
2023-03-13 16:06:12.187243: W tensorflow/compiler/xla/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'libnvinfer_plugin.so.7'; dlerror: libnvinfer_plugin.so.7: cannot open shared object file: No such file or directory; LD_LIBRARY_PATH: /usr/local/nvidia/lib:/usr/local/nvidia/lib64:/.singularity.d/libs
2023-03-13 16:06:12.187293: W tensorflow/compiler/tf2tensorrt/utils/py_utils.cc:38] TF-TRT Warning: Cannot dlopen some TensorRT libraries. If you would like to use Nvidia GPU with TensorRT, please make sure the missing libraries mentioned above are installed properly.
Hi,
Following the install procedure I've run, on a GPU node, an annotation test. But I get warnings about missing libraries : libnvinfer.so.7, libnvinfer_plugin.so.7. And when I monitor the server, the job seems to run only on CPU.
What should I do to fix this?
singularity run --nv helixer-docker_helixer_v0.3.1_cuda_11.2.0-cudnn8.sif Helixer.py --fasta-path my.fasta --lineage land_plant --gff-output-path my.gff3
2023-03-13 16:06:09.959811: I tensorflow/core/platform/cpu_feature_guard.cc:193] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 AVX512F AVX512_VNNI FMA
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
2023-03-13 16:06:10.359479: I tensorflow/core/util/port.cc:104] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable
TF_ENABLE_ONEDNN_OPTS=0.2023-03-13 16:06:12.183775: W tensorflow/compiler/xla/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'libnvinfer.so.7'; dlerror: libnvinfer.so.7: cannot open shared object file: No such file or directory; LD_LIBRARY_PATH: /usr/local/nvidia/lib:/usr/local/nvidia/lib64:/.singularity.d/libs
2023-03-13 16:06:12.187243: W tensorflow/compiler/xla/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'libnvinfer_plugin.so.7'; dlerror: libnvinfer_plugin.so.7: cannot open shared object file: No such file or directory; LD_LIBRARY_PATH: /usr/local/nvidia/lib:/usr/local/nvidia/lib64:/.singularity.d/libs
2023-03-13 16:06:12.187293: W tensorflow/compiler/tf2tensorrt/utils/py_utils.cc:38] TF-TRT Warning: Cannot dlopen some TensorRT libraries. If you would like to use Nvidia GPU with TensorRT, please make sure the missing libraries mentioned above are installed properly.