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Installation problem #12

@francicco

Description

@francicco

Hi,

I'm trying to compile it but rust returns me this error:

cargo build --release
   Compiling autocfg v1.4.0
   Compiling memchr v2.7.4
   Compiling regex-syntax v0.8.5
   Compiling cfg-if v1.0.0
   Compiling libc v0.2.164
   Compiling pkg-config v0.3.31
   Compiling proc-macro2 v1.0.91
   Compiling unicode-ident v1.0.14
   Compiling parking_lot_core v0.8.6
   Compiling syn v1.0.109
   Compiling paste v1.0.15
   Compiling rawpointer v0.2.1
   Compiling hdf5-types v0.8.1
   Compiling smallvec v1.13.2
   Compiling scopeguard v1.2.0
   Compiling hdf5 v0.8.1
   Compiling ascii v1.1.0
   Compiling lazy_static v1.5.0
   Compiling bitflags v1.3.2
   Compiling libloading v0.7.4
   Compiling instant v0.1.13
   Compiling num-traits v0.2.19
   Compiling lock_api v0.4.12
   Compiling matrixmultiply v0.3.9
   Compiling aho-corasick v1.1.3
   Compiling quote v1.0.37
   Compiling regex-automata v0.4.9
   Compiling parking_lot v0.11.2
   Compiling num-complex v0.4.6
   Compiling num-integer v0.1.46
   Compiling ndarray v0.15.6
   Compiling regex v1.11.1
   Compiling hdf5-derive v0.8.1
   Compiling hdf5-sys v0.8.1
error: failed to run custom build command for `hdf5-sys v0.8.1`

Caused by:
  process didn't exit successfully: `/user/work/tk19812/software/Helixer/HelixerPost/target/release/build/hdf5-sys-f47b10058eeafb65/build-script-build` (exit status: 101)
  --- stdout
  Attempting to find HDF5 via pkg-config...
  cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
  cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-unknown-linux-gnu
  cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_unknown_linux_gnu
  cargo:rerun-if-env-changed=HOST_PKG_CONFIG
  cargo:rerun-if-env-changed=PKG_CONFIG
  cargo:rerun-if-env-changed=HDF5_STATIC
  cargo:rerun-if-env-changed=HDF5_DYNAMIC
  cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
  cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
  cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
  cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
  cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
  cargo:rerun-if-env-changed=PKG_CONFIG_PATH
  cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
  cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
  cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
  cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
  cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
  cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
  cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
  cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
  cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
  cargo:rerun-if-env-changed=SYSROOT
  cargo:rerun-if-env-changed=HDF5_STATIC
  cargo:rerun-if-env-changed=HDF5_DYNAMIC
  cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
  cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
  cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-unknown-linux-gnu
  cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_unknown_linux_gnu
  cargo:rerun-if-env-changed=HOST_PKG_CONFIG
  cargo:rerun-if-env-changed=PKG_CONFIG
  cargo:rerun-if-env-changed=HDF5_STATIC
  cargo:rerun-if-env-changed=HDF5_DYNAMIC
  cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
  cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
  cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
  cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
  cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
  cargo:rerun-if-env-changed=PKG_CONFIG_PATH
  cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
  cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
  cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
  cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
  cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
  cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
  cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
  cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
  Found HDF5 pkg-config entry
      Include paths:
      - "/software/spack/linux-rocky8-broadwell/gcc-12.3.0/hdf5-1.14.3-fcxp/include"
      Link paths:
      - "/software/spack/linux-rocky8-broadwell/gcc-12.3.0/hdf5-1.14.3-fcxp/lib"
  Located HDF5 headers at:
      "/software/spack/linux-rocky8-broadwell/gcc-12.3.0/hdf5-1.14.3-fcxp/include"
  Parsing HDF5 config from:
      "/software/spack/linux-rocky8-broadwell/gcc-12.3.0/hdf5-1.14.3-fcxp/include/H5pubconf.h"

  --- stderr
  thread 'main' panicked at /user/home/tk19812/.cargo/registry/src/index.crates.io-6f17d22bba15001f/hdf5-sys-0.8.1/build.rs:200:21:
  Invalid H5_VERSION: "1.14.3"
  note: run with `RUST_BACKTRACE=1` environment variable to display a backtrace
warning: build failed, waiting for other jobs to finish...

How do I fix it? I'm not familiar with rust/cargo.

Cheers
F

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