Skip to content

Potential issue between EffectsDesign and SequenceDesign #191

Description

@ReneSkukies

I am using an S-C-R SequenceDesign in some simulations, and using the EffectDesign I was trying to get the ground truth data. Here I noticed that the S component/ ERP seems shifted by several sample points. On further investigation this only happens when I provide all components ( S-C-R) to the simulate function (see below).

Image

My guess is that simulate silently pads each component/ epoch when you want return_epoched=true to match the longest component, so that the data output doesn't lead to a mismatch. This is ofc, detrimental if you want to use the EffectsDesign output for an error analysis.

One current workaround would be to just make an EffectsDesign for each component independently (I think, haven't tried yet).

This might be related to #179 , but unsure

# Only the components and simulate function for later reference

p1 = LinearModelComponent(;
    basis = p100(; sfreq = sfreq),
    formula = @formula(0 ~ 1),
    β = [s_amp],
	)
	
n1 = LinearModelComponent(;
    basis = n170(; sfreq = sfreq),
    formula = @formula(0 ~ 1),
    β = [s_amp],
)

p3 = LinearModelComponent(;
    basis = UnfoldSim.hanning(0.2, 0.1, sfreq), # sfreq = 100 for the other bases
    formula = @formula(0 ~ 1 + continuous),
    β = [c_amp, 1],
)

resp = LinearModelComponent(;
    #basis = UnfoldSim.hanning(Int(0.5 * sfreq)), # sfreq = 100 for the other bases
	basis = UnfoldSim.hanning(0.2, 0.1, sfreq),
    formula = @formula(0 ~ 1),
    β = [r_amp],
    offset = -10*2.5,
)

components = Dict('S' => [p1, n1], 'C' => [p3], 'R' => [resp])

gtd, gt_events = simulate(
    MersenneTwister(1),
    effects_design,
    components['S'],
    NoOnset(),
    NoNoise(),
    return_epoched = true,
	);

# VS

gtd, gt_events = simulate(
    MersenneTwister(1),
    effects_design,
    components, # <- the change
    NoOnset(),
    NoNoise(),
    return_epoched = true,
	);

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    bugSomething isn't working

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions