tools/sample.gb.ann at main · tkosuge/tools · GitHub

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COMMON	SUBMITTER		contact	Arnab Sen
			ab_name	Sen,A.
			ab_name	Ahuja,A.
			country	India
			zip	793103
			state	Meghalaya
			city	Umiam
			street	Umroi Road
			department	Division of Animal Health
			institute	ICAR Research Complex for NEH Region
			phone	1-555-5555
			email	sample@sample.test
	REFERENCE		ab_name	Ahuja,A.
			ab_name	Bhattarcharjee,U.
			ab_name	Chakraborty,A.K.
			ab_name	Karam,A.
			ab_name	Ghatak,S.
			ab_name	Puro,K.
			ab_name	Das,S.
			ab_name	Shakuntala,I.
			ab_name	Sanjukta,R.K.
			ab_name	Srivastava,N.
			ab_name	Sen,A.
			status	Unpublished
			title	Emargence of subgenogroup 2.1 of Classical swine fever virus in north-eastern India.
			year	2014
LC000001_1	source	1..1119	collection_date	2013
			country	India
			host	Sus scrofa
			isolation_source	blood of pig
			mol_type	genomic RNA
			organism	Classical swine fever virus
			strain	ML/RRTC-B14
			environmental_sample
			ff_definition	Classical swine fever virus gene for polyprotein, E2 protein region, strain: ML/RRTC-B14
	CDS	<1..>1119	codon_start	1
			product	polyprotein
			transl_table	1
	mat_peptide	<1..>1119	gene	E2
			product	envelope protein 2
	KEYWORD		keyword	ENV
	DIVISION		division	ENV
LC000002_2	source	1..1119	collection_date	2012
			country	India
			host	Sus scrofa
			isolation_source	blood of pig
			mol_type	genomic RNA
			organism	Classical swine fever virus
			strain	AS/Guwahati-G4
			ff_definition	Classical swine fever virus gene for polyprotein, E2 protein region, strain: AS/Guwahati-G4
	CDS	<1..>1119	codon_start	1
			product	polyprotein
			transl_table	1
	mat_peptide	<1..>1119	gene	E2
			product	envelope protein 2
LC000003_3	source	1..12737	collection_date	2012-09-28
			country	United Kingdom
			isolate	GB_Glos_2012
			isolation_source	semen of horse
			mol_type	genomic RNA
			organism	Equine arteritis virus
			ff_definition	Equine arteritis virus genomic RNA, complete genome, isolate: GB_Glos_2012
	CDS	join(223..5403,5403..9749)	codon_start	1
			note	ORF1ab
			product	replicase
			ribosomal_slippage
			transl_table	1
	CDS	9749..9952	codon_start	1
			note	ORF2a
			product	envelope protein E
			transl_table	1
	CDS	9822..10505	codon_start	1
			note	ORF2b
			product	glycoprotein 2
			transl_table	1
	CDS	10304..10795	codon_start	1
			note	ORF3
			product	glycoprotein 3
			transl_table	1
	CDS	10698..11156	codon_start	1
			note	ORF4
			product	glycoprotein 4
			transl_table	1
	CDS	11144..11911	codon_start	1
			note	ORF5
			product	glycoprotein 5
			transl_table	1
	CDS	11899..12387	codon_start	1
			note	ORF6
			product	membrane protein
			transl_table	1
	CDS	12311..12643	codon_start	1
			note	ORF7
			product	nucleocapsid
			transl_table	1
LC000004_4	source	1..323	mol_type	genomic DNA
			organism	Columba livia
			collection_date	1990-01-23
			country	Japan
			ff_definition	Columba livia DNA, EPIC marker TBC1D22B
	misc_feature	1..323	note	EPIC marker TBC1D22B
LC000005_5	source	1..388	mol_type	genomic DNA
			organism	Corvus corone
			collection_date	1990-01-23
			country	Japan
			ff_definition	Corvus corone DNA, EPIC marker TBC1D22B
	misc_feature	1..388	note	EPIC marker TBC1D22B
LC000006_6	source	1..387	mol_type	genomic DNA
			organism	Corvus macrorhynchos
			collection_date	1990-01-23
			country	Japan
			ff_definition	Corvus macrorhynchos DNA, EPIC marker TBC1D22B
	misc_feature	1..387	note	EPIC marker TBC1D22B
LC000007_7	source	1..370	mol_type	genomic DNA
			organism	Hirundo rustica
			collection_date	1990-01-23
			country	Japan
			ff_definition	Hirundo rustica DNA, EPIC marker TBC1D22B
	misc_feature	1..370	note	EPIC marker TBC1D22B
LC000008_8	source	1..357	mol_type	genomic DNA
			organism	Microscelis amaurotis
			collection_date	1990-01-23
			country	Japan
			ff_definition	Microscelis amaurotis DNA, EPIC marker TBC1D22B
	misc_feature	1..357	note	EPIC marker TBC1D22B
LC000009_9	source	1..391	mol_type	genomic DNA
			organism	Motacilla alba ocularis x lugens
			collection_date	1990-01-23
			country	Japan
			ff_definition	Motacilla alba ocularis x lugens DNA, EPIC marker TBC1D22B
	misc_feature	1..391	note	EPIC marker TBC1D22B
LC000010_10	source	1..382	mol_type	genomic DNA
			organism	Passer montanus
			collection_date	1990-01-23
			country	Japan
			ff_definition	Passer montanus DNA, EPIC marker TBC1D22B
	misc_feature	1..382	note	EPIC marker TBC1D22B