From e9486338527766e6b5b49a11beeadb5d29d85442 Mon Sep 17 00:00:00 2001
From: Jan Stanstrup <stanstrup@gmail.com>
Date: Thu, 30 Oct 2025 08:56:37 +0100
Subject: [PATCH] replaced misleading explanation of applyAdjustedRtime

I assume original RTs should be raw RTs in applyAdjustedRtime. I replaced with a text similar to that in DataClasses.R.
---
 R/functions-XCMSnExp.R | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/R/functions-XCMSnExp.R b/R/functions-XCMSnExp.R
index 544c121a..34eb7fd2 100644
--- a/R/functions-XCMSnExp.R
+++ b/R/functions-XCMSnExp.R
@@ -910,8 +910,9 @@ isCalibrated <- function(object) {
 #'
 #' @details
 #'
-#' Adjusted retention times are stored *in parallel* to the adjusted
-#' retention times in `XCMSnExp` or `XcmsExperiment` objects. The
+#' Adjusted retention times are stored in an `XCMSnExp` or `XcmsExperiment` 
+#' object besides the original, raw, retention times, allowing to switch 
+#' between raw and adjusted times.
 #' `applyAdjustedRtime` replaces the raw (original) retention times with the
 #' adjusted retention times.
 #'