gitpod and github actions

Author: johanneskoester

.github/workflows/main.yml

@@ -0,0 +1,15 @@
+name: Test container build
+
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+    branches_ignore: []
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@master
+    - run: docker build .

.github/workflows/publish-to-dockerhub.yml

@@ -0,0 +1,21 @@
+name: Publish release to Docker Hub
+
+on:
+  release:
+    types:
+      - published
+
+jobs:
+  update:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@master
+    - name: Get release version
+      run: echo "RELEASE_VERSION=$(echo ${GITHUB_REF:10})" >> $GITHUB_ENV
+    - name: Publish to Registry
+      uses: elgohr/Publish-Docker-Github-Action@3.01
+      with:
+        name: snakemake/snakemake
+        username: ${{ secrets.DOCKER_USERNAME }}
+        password: ${{ secrets.DOCKER_TOKEN }}
+        tags: "${{ env.RELEASE_VERSION }},stable"

.gitpod.yml

@@ -0,0 +1,6 @@
+image: snakemake/snakemake:v6.0.0
+tasts:
+  - init: Cleanup tutorial environment
+    command: rm Snakefile .gitpod.yml upload_google_storage.py Dockerfile
+  - activate-env: Activate environment
+    command: conda activate snakemake-tutorial

Dockerfile

@@ -0,0 +1,4 @@
+FROM condaforge/mambaforge
+ENV SHELL /bin/bash
+ADD environment.yaml .
+RUN mamba env create -n snakemake-tutorial -f environment.yaml

README.md

@@ -1,7 +1,13 @@
+[![Gitpod Ready-to-Code](https://img.shields.io/badge/Gitpod-ready--to--code-blue?logo=gitpod)](https://gitpod.io/#https://github.com/snakemake/snakemake-tutorial-data)
+
 # Example data for the Snakemake tutorial
 
 This repository hosts the data needed for the [Snakemake tutorial](https://snakemake.readthedocs.io/en/stable/tutorial/tutorial.html).
 
+
+<details>
+  <summary>Click for cloud upload instructions.</summary>
+
 ## Uploaders
 
 ### Google Cloud Storage
@@ -15,7 +21,7 @@ export GOOGLE_APPLICATION_CREDENTIALS=/path/to/credentials.json
 
 And install the google-cloud-storage client:
 
-```bsah
+```bash
 pip install google-cloud-storage
 ```
 
@@ -76,3 +82,4 @@ You should then be able to see your files in Storage! Good job!
 
 ![.aux/upload-google-storage.png](.aux/upload-google-storage.png)
 
+</details>