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lines changed Original file line number Diff line number Diff line change 1313Scanpy – Single-Cell Analysis in Python
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16- .. raw :: html
16+ .. image :: http://falexwolf.de/img/tsne_1.3M.png
17+ :width: 90px
18+ :align: left
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18- <p >
19- <img src =" http://falexwolf.de/img/tsne_1.3M.png" style =" width : 90px ; margin : 3px 10px 5px 5px " align =" left" >
20- Scanpy is a scalable toolkit for analyzing single-cell gene expression
21- data. It includes preprocessing, visualization, clustering, pseudotime and
22- trajectory inference and differential expression testing. The Python-based
23- implementation efficiently deals with datasets of more than one million
24- cells.
25- </p >
20+ Scanpy is a scalable toolkit for analyzing single-cell gene expression data.
21+ It includes preprocessing, visualization, clustering, pseudotime and trajectory
22+ inference and differential expression testing. The Python-based implementation
23+ efficiently deals with datasets of more than one million cells.
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27- Read the `documentation <https://scanpy.readthedocs.io >`__.
28- If Scanpy is useful for your research, consider citing `Genome Biology (2018) <https://doi.org/10.1186/s13059-017-1382-0 >`__.
25+ Read the documentation _.
26+ If Scanpy is useful for your research, consider citing `Genome Biology (2018) `_.
27+
28+ .. _documentation : https://scanpy.readthedocs.io
29+ .. _Genome Biology (2018) : https://doi.org/10.1186/s13059-017-1382-0
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