teaching.qmd

---
title: "Teaching"
date: "January 5, 2023"
date-modified: "`r Sys.Date()`"
---

```{r}

```

::: {.callout-note icon="true"}
## Disclaimers

This section contains slides and other materials elaborated by lab members. Unless otherwise stated, all the materials are shared under CC BY-NC-SA license.

Although most of the material is in English, some of the information of the courses may be in Spanish.

To optimize the site space, only the most recent versions are included using\
temporal links. Please let us know if you cannot download some files.
:::

::: {style="float: right; position: relative; top: -160px; padding: 3px;"}
[![](figs/by-nc-sa.png){width="92"}](https://creativecommons.org/licenses/by-nc-sa/4.0/)
:::

# Bachelor Degree in Biochemistry (Grado en Bioquímica)

## Biosynthesis of Macromolecules (3rd year, Fall Semester)

In this course, we provide a detailed background on the flow of genetic information. Since the year 2019-2020, Modesto lecture the first part of the course focused on **DNA Replication & Repair.**

-   [2023-2024 Course Syllabus](https://dauam-my.sharepoint.com/:b:/g/personal/modesto_redrejo_uam_es/EW0FgKhnWp9ChzLMxPmpiqUBcp2-8EykmdqJKJ6qIe5QQQ?e=tIPMA6)

-   [2024-2025 Replication and Repair Slides](https://dauam-my.sharepoint.com/:f:/g/personal/modesto_redrejo_uam_es/EvPycXrpxclNm2iOSmJ3ufABPL5SJa5-egVX58105WiZUA?e=fDCP5n)

## Coding Tools for Biochemistry and Molecular Biology (4rd year, Fall Semester)

This is an introductory course to bioinformatics coding, by the use of Python and R. Since the year 2021-22 Modesto lecture most of the **R** section.

-   [2024-2025 Course Materials](https://r4biochemists.github.io/) (materials developed with the help of Prof. Luis del Peso).

-   [2024-2025 Syllabus](https://github.com/r4biochemists/r4biochemists.github.io/blob/main/2024_18245_es.pdf)

-   [Project-based approach scheme](https://github.com/r4biochemists/r4biochemists.github.io/blob/main/intro_PBL_2024.pdf)

## Experimental Models in Biomedicine (4rd year, Fall Semester)

In this course, we mentor the students in developing research projects using diverse biological models. Namely, we participate in the use of **yeast two-hybrid boosted by high-throughput sequencing approaches to study protein interactomes**.

-   [2022-2023 Syllabus](https://dauam-my.sharepoint.com/:b:/g/personal/modesto_redrejo_uam_es/EYlIhaze0UxLn6cCDmz0VG8BHZjlOjOSXvNqqW5jiyW46g?e=HAjQWJ)

-   [2024-2025 Slides](https://dauam-my.sharepoint.com/:b:/g/personal/modesto_redrejo_uam_es/EYTULReLwwBNmOBTsihsfgoBgToipCxISSJJ7SsoT44cvw?e=iWtTbm)

# Master's Degree in Bioinformatics and Computational Biology

## Structural Bioinformatics

-   [2024-2025 Materials](https://strbio.github.io/)

# Other Lectures & Courses

## Replication, Repair and Genome's Instability (Master's Degree in Biomolecules and Cell Dynamics)

[Repair of oxidative DNA damage (Slides 2024-2025).](https://dauam-my.sharepoint.com/:b:/g/personal/modesto_redrejo_uam_es/EerDM7ROrO9PtPDQ1WXL-P8Bi7d-oDAn-ZOVeq6a_c_PrA?e=p9OVh4)

## Bioinformatics for non-bioinformaticians ([link](https://civis.eu/en/civis-courses/bioinformatics-for-non-bioinformaticians-computational-analyses-in-health-and-life-sciences))

*CIVIS Summer School in Tübingen (18-22 July 2022).*

[Hands on Introduction to Protein Modeling](https://mredrejo.github.io/handson2022/)