-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathTest_1_peaks.xls
More file actions
48 lines (47 loc) · 2.88 KB
/
Copy pathTest_1_peaks.xls
File metadata and controls
48 lines (47 loc) · 2.88 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
# This file is generated by MACS version 3.0.0a6
# Command line: callpeak -f BAMPE -t ./only_unique/Test_1_only_unique.bam -g 1373484369 -B -q 0.05 --keep-dup all --shift 37 --extsize 73 -n Test_1 --outdir ./macs3_peaks_03
# ARGUMENTS LIST:
# name = Test_1
# format = BAMPE
# ChIP-seq file = ['./only_unique/Test_1_only_unique.bam']
# control file = None
# effective genome size = 1.37e+09
# band width = 300
"# model fold = [5, 50]"
# qvalue cutoff = 5.00e-02
# The maximum gap between significant sites is assigned as the read length/tag size.
# The minimum length of peaks is assigned as the predicted fragment length "d".
# Larger dataset will be scaled towards smaller dataset.
# Range for calculating regional lambda is: 10000 bps
# Broad region calling is off
# Paired-End mode is on
# fragment size is determined as 238 bps
# total fragments in treatment: 2026967
# d = 238
chr start end length abs_summit pileup #NAME? fold_enrichment #NAME? name
1 6724 7039 316 6804 7 5.74652 4.48073 2.56391 Test_1_peak_1
1 27348 27765 418 27680 16 16.0429 9.15541 11.3432 Test_1_peak_2
1 36672 36947 276 36729 10 8.44002 5.77601 4.68382 Test_1_peak_3
1 60005 60519 515 60192 11 10.3281 6.76619 6.27481 Test_1_peak_4
1 78693 78989 297 78762 6 5.621 4.45514 2.54508 Test_1_peak_5
1 83824 84157 334 83989 5 4.84968 4.00049 1.99263 Test_1_peak_6
1 98305 98584 280 98415 4 4.1897 3.5597 1.67033 Test_1_peak_7
1 174925 175226 302 174997 6 4.17784 3.56428 1.67033 Test_1_peak_8
1 204647 204938 292 204934 5 4.84968 4.00049 1.99263 Test_1_peak_9
1 226837 227193 357 226915 5 5.29402 4.23575 2.32698 Test_1_peak_10
1 338087 338357 271 338172 6 6.06879 4.70457 2.82679 Test_1_peak_11
1 353698 354121 424 353953 5 5.67371 4.42148 2.54508 Test_1_peak_12
1 532393 532672 280 532483 6 5.45015 4.35616 2.44436 Test_1_peak_13
1 832231 832599 369 832531 4 4.47769 3.70028 1.70652 Test_1_peak_14
1 960069 960336 268 960203 4 4.47769 3.70028 1.70652 Test_1_peak_15
1 976979 977601 623 977231 7 6.38905 4.87027 3.08298 Test_1_peak_16
1 1014783 1015087 305 1014890 7 7.62498 5.55435 4.02402 Test_1_peak_17
1 1042077 1042491 415 1042242 9 10.41 7.00078 6.34146 Test_1_peak_18
1 1076763 1077160 398 1076969 6 5.18823 4.20062 2.25464 Test_1_peak_19
1 1180849 1181201 353 1181057 7 6.05034 4.66739 2.81374 Test_1_peak_20
1 1252229 1252608 380 1252277 8 8.29281 5.907 4.58876 Test_1_peak_21
1 1492180 1492432 253 1492371 5 5.71399 4.44034 2.54508 Test_1_peak_22
1 1558185 1558442 258 1558254 5 5.71399 4.44034 2.54508 Test_1_peak_23
1 1713481 1713952 472 1713518 9 8.23665 5.794 4.53999 Test_1_peak_24
1 1743987 1744242 256 1744064 4 4.07411 3.50039 1.59453 Test_1_peak_25
1 1984550 1984880 331 1984871 5 5.51434 4.34527 2.48277 Test_1_peak_26