Repositories list

• upptime

  Public
  📈 Uptime monitor and status page for OME, powered by @upptime

  uptime-monitorstatus-pageupptime

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •22 forks in ome/upptime•11 star in ome/upptime•44 issues in ome/upptime•00 pull requests in ome/upptime•Updated Oct 23, 2026Oct 23, 2026

• bio-formats-documentation

  Public
  Bio-Formats documentation

  documentationbio-formats

  documentationbio-formats

  Java

  •

  BSD 2-Clause "Simplified" License

  •1919 forks in ome/bio-formats-documentation•99 stars in ome/bio-formats-documentation•55 issues in ome/bio-formats-documentation•11 pull request in ome/bio-formats-documentation•Updated Oct 22, 2026Oct 22, 2026

• status

  Public
  Status dashboard for the OME project

  statusdashboardgh-pages+ 1

  statusdashboardgh-pagesome

  HTML

  •44 forks in ome/status•11 star in ome/status•77 issues in ome/status•11 pull request in ome/status•Updated Oct 22, 2026Oct 22, 2026

• bioformats

  Public
  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats…

  javametadataimage+ 7

  javametadataimageformat-readerformat-converterbio-formatslife-sciences-imagewhole-slide-imagingwsilightsheet

  Java

  •

  GNU General Public License v2.0

  •262262 forks in ome/bioformats•433433 stars in ome/bioformats•150150 issues in ome/bioformats•1313 pull requests in ome/bioformats•Updated Oct 22, 2026Oct 22, 2026

• omero-figure

  Public
  An OMERO.web app for creating Figures from images in OMERO

  webappomero

  webappomero

  JavaScript

  •

  GNU Affero General Public License v3.0

  •3838 forks in ome/omero-figure•2222 stars in ome/omero-figure•6363 issues in ome/omero-figure•44 pull requests in ome/omero-figure•Updated Oct 21, 2026Oct 21, 2026

• www.openmicroscopy.org

  Public
  OME main website

  jekyll-siteome

  jekyll-siteome

  HTML

  •

  Creative Commons Attribution 4.0 International

  •2727 forks in ome/www.openmicroscopy.org•66 stars in ome/www.openmicroscopy.org•1616 issues in ome/www.openmicroscopy.org•22 pull requests in ome/www.openmicroscopy.org•Updated Oct 21, 2026Oct 21, 2026

• omero-iviewer

  Public
  An OMERO.web app allowing to view images

  webappomero

  webappomero

  JavaScript

  •

  Other

  •3737 forks in ome/omero-iviewer•2020 stars in ome/omero-iviewer•6060 issues in ome/omero-iviewer•1010 pull requests in ome/omero-iviewer•Updated Oct 20, 2026Oct 20, 2026

• omero-demo-cleanup

  Public
  A CLI plugin for managing the disk space on the OME demo server

  Python

  •

  GNU General Public License v2.0

  •44 forks in ome/omero-demo-cleanup•22 stars in ome/omero-demo-cleanup•00 issues in ome/omero-demo-cleanup•11 pull request in ome/omero-demo-cleanup•Updated Oct 19, 2026Oct 19, 2026

• omero-cli-zarr

  Public
  omerozarrngff+ 1

  omerozarrngffome-zarr-converter

  Python

  •

  GNU General Public License v2.0

  •1212 forks in ome/omero-cli-zarr•2222 stars in ome/omero-cli-zarr•2323 issues in ome/omero-cli-zarr•55 pull requests in ome/omero-cli-zarr•Updated Oct 19, 2026Oct 19, 2026

• bioimage-latency-benchmark

  Public
  Jupyter Notebook

  •

  Other

  •1010 forks in ome/bioimage-latency-benchmark•99 stars in ome/bioimage-latency-benchmark•66 issues in ome/bioimage-latency-benchmark•44 pull requests in ome/bioimage-latency-benchmark•Updated Oct 19, 2026Oct 19, 2026

• ome-zarr-py

  Public
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  omezarrngff+ 1

  omezarrngffome-zarr

  Python

  •

  Other

  •8282 forks in ome/ome-zarr-py•262262 stars in ome/ome-zarr-py•7575 issues in ome/ome-zarr-py•1818 pull requests in ome/ome-zarr-py•Updated Oct 19, 2026Oct 19, 2026

• napari-ome-zarr

  Public
  A napari plugin for zarr backed OME-NGFF images

  pythonnapari-pluginzarr+ 1

  pythonnapari-pluginzarrngff

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2828 forks in ome/napari-ome-zarr•5656 stars in ome/napari-ome-zarr•3131 issues in ome/napari-ome-zarr•77 pull requests in ome/napari-ome-zarr•Updated Oct 19, 2026Oct 19, 2026

• ome_zarr_test_suite

  Public
  Test suite of reader and writer implementations

  Python

  •77 forks in ome/ome_zarr_test_suite•55 stars in ome/ome_zarr_test_suite•44 issues in ome/ome_zarr_test_suite•33 pull requests in ome/ome_zarr_test_suite•Updated Oct 19, 2026Oct 19, 2026

• ngff

  Public
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  data-sciencecloudspec+ 2

  data-sciencecloudspecbioimagingfile-formats

  Python

  •

  Other

  •7676 forks in ome/ngff•177177 stars in ome/ngff•118118 issues in ome/ngff•55 pull requests in ome/ngff•Updated Oct 19, 2026Oct 19, 2026

• ome-ngff-validator

  Public
  Web page for validating OME-NGFF files

  ome-zarr

  ome-zarr

  Svelte

  •

  BSD 2-Clause "Simplified" License

  •1010 forks in ome/ome-ngff-validator•1212 stars in ome/ome-ngff-validator•1313 issues in ome/ome-ngff-validator•22 pull requests in ome/ome-ngff-validator•Updated Oct 16, 2026Oct 16, 2026

• ome-model

  Public
  OME model (specification, code generator, implementation)

  imageschemadata-model+ 3

  imageschemadata-modelspecificationcode-generationome-model

  XSLT

  •

  Other

  •2929 forks in ome/ome-model•1919 stars in ome/ome-model•99 issues in ome/ome-model•00 pull requests in ome/ome-model•Updated Oct 16, 2026Oct 16, 2026

• omero-cli-transfer

  Public
  An OMERO CLI plugin for creating transfer packets between OMERO servers.

  omeroomero-serveromero-import

  omeroomero-serveromero-import

  Python

  •

  GNU General Public License v2.0

  •2020 forks in ome/omero-cli-transfer•1919 stars in ome/omero-cli-transfer•88 issues in ome/omero-cli-transfer•11 pull request in ome/omero-cli-transfer•Updated Oct 15, 2026Oct 15, 2026

• napari-omero

  Public
  Browse your OMERO database from within napari.

  omeronapari-pluginnapari

  omeronapari-pluginnapari

  Python

  •

  GNU General Public License v2.0

  •1616 forks in ome/napari-omero•4141 stars in ome/napari-omero•1111 issues in ome/napari-omero•33 pull requests in ome/napari-omero•Updated Oct 13, 2026Oct 13, 2026

• omero-guides

  Public
  Guides for using OMERO

  docshelpomero+ 3

  docshelpomeroguidesmanualsomero-training

  Python

  •

  BSD 2-Clause "Simplified" License

  •66 forks in ome/omero-guides•11 star in ome/omero-guides•1414 issues in ome/omero-guides•11 pull request in ome/omero-guides•Updated Oct 13, 2026Oct 13, 2026

• bio-formats-examples

  Public
  Examples of usage of the Bio-Formats API

  apigradlemaven+ 2

  apigradlemavenexamplesbio-formats

  Java

  •

  Other

  •1919 forks in ome/bio-formats-examples•1313 stars in ome/bio-formats-examples•00 issues in ome/bio-formats-examples•00 pull requests in ome/bio-formats-examples•Updated Oct 13, 2026Oct 13, 2026

• omero-cli-server

  Public
  CLI plugin for managing an OMERO.server

  Python

  •

  GNU General Public License v2.0

  •33 forks in ome/omero-cli-server•11 star in ome/omero-cli-server•00 issues in ome/omero-cli-server•44 pull requests in ome/omero-cli-server•Updated Oct 12, 2026Oct 12, 2026

• omero_search_engine

  Public
  App which is used to search metadata (key-value pairs)

  Python

  •

  GNU General Public License v2.0

  •55 forks in ome/omero_search_engine•33 stars in ome/omero_search_engine•1515 issues in ome/omero_search_engine•77 pull requests in ome/omero_search_engine•Updated Oct 12, 2026Oct 12, 2026

• omero-rois

  Public
  OMERO python ROI utils

  pythonomero

  pythonomero

  Python

  •

  GNU General Public License v2.0

  •77 forks in ome/omero-rois•33 stars in ome/omero-rois•22 issues in ome/omero-rois•11 pull request in ome/omero-rois•Updated Oct 12, 2026Oct 12, 2026

• omero-certificates

  Public
  OMERO server certificate management plugin

  pluginclideployment+ 3

  pluginclideploymentservercertificatesomero

  Python

  •

  GNU General Public License v2.0

  •77 forks in ome/omero-certificates•00 stars in ome/omero-certificates•22 issues in ome/omero-certificates•22 pull requests in ome/omero-certificates•Updated Oct 12, 2026Oct 12, 2026

• omero-ms-zarr

  Public
  Experimental micro-service for implementing the Zarr spec over HTTP

  microserviceioomero+ 1

  microserviceioomerozarr

  Java

  •

  GNU General Public License v2.0

  •1212 forks in ome/omero-ms-zarr•2121 stars in ome/omero-ms-zarr•1717 issues in ome/omero-ms-zarr•11 pull request in ome/omero-ms-zarr•Updated Oct 12, 2026Oct 12, 2026

• omero-web

  Public
  Django-based OMERO.web client

  pythonclientdjango+ 2

  pythonclientdjangowebomero

  Python

  •4141 forks in ome/omero-web•2424 stars in ome/omero-web•142142 issues in ome/omero-web•88 pull requests in ome/omero-web•Updated Oct 12, 2026Oct 12, 2026

• omero-guide-qupath

  Public
  BSD 2-Clause "Simplified" License

  •44 forks in ome/omero-guide-qupath•00 stars in ome/omero-guide-qupath•00 issues in ome/omero-guide-qupath•00 pull requests in ome/omero-guide-qupath•Updated Oct 12, 2026Oct 12, 2026

• omero-insight

  Public
  Gradle project containing insight java client for OMERO

  javaclientgui+ 1

  javaclientguiomero

  Java

  •

  GNU General Public License v2.0

  •1313 forks in ome/omero-insight•88 stars in ome/omero-insight•133133 issues in ome/omero-insight•44 pull requests in ome/omero-insight•Updated Oct 9, 2026Oct 9, 2026

• presentations

  Public
  HTML-based presentations from the OME team.

  htmlreveal-jspresentations

  htmlreveal-jspresentations

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •1919 forks in ome/presentations•00 stars in ome/presentations•00 issues in ome/presentations•00 pull requests in ome/presentations•Updated Oct 7, 2026Oct 7, 2026

• ome-contributing

  Public
  77 forks in ome/ome-contributing•11 star in ome/ome-contributing•11 issue in ome/ome-contributing•22 pull requests in ome/ome-contributing•Updated Oct 7, 2026Oct 7, 2026