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    391 repositories

    • Playbook-Workflow-Builder

      Public
      A repository for the Playbook Workflow Builder project.
      workflowdata-sciencebioinformatics
      workflowdata-sciencebioinformaticsgene-setsbiologysystems-biologygene-expressiongene-ontologyproteomicscwl
      TypeScript
      •
      Creative Commons Attribution 4.0 International
      •19•27•40•0•Updated Apr 29, 2026Apr 29, 2026

    • DRC-Portals

      Public
      This repo has the code for the CFDE Workbench. The workbench serves the CFDE Information Portal and the CFDE Data Portal
      ot2od036435
      ot2od036435
      TypeScript
      •0•1•12•2•Updated Apr 27, 2026Apr 27, 2026

    • cfde-wheel

      Public
      Documentation for CFDE Navigation Wheel
      TypeScript
      •
      Other
      •2•1•0•0•Updated Apr 24, 2026Apr 24, 2026

    • rummagene

      Public
      Python
      •
      Other
      •4•12•8•0•Updated Apr 24, 2026Apr 24, 2026

    • marathon-haproxy-healthcheck

      Public
      A utility for checking the health of HAProxy routes and restarting haproxy if necessary
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Apr 21, 2026Apr 21, 2026

    • helm-charts

      Public
      A repository for helm charts
      Go Template
      •0•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • kubernetes-auto-ingress

      Public
      Auto-generate kubernetes ingresses based on a deployment annotation.
      Python
      •
      Apache License 2.0
      •0•1•1•0•Updated Apr 17, 2026Apr 17, 2026

    • chea_kg_ts_appyter

      Public
      JavaScript
      •0•0•2•0•Updated Apr 17, 2026Apr 17, 2026

    • cfde-c2m2

      Public
      A collection of utilities for simplifying the C2M2 submission process.
      Python
      •1•3•2•0•Updated Apr 17, 2026Apr 17, 2026

    • drc-static

      Public
      Jupyter Notebook
      •0•0•0•1•Updated Apr 17, 2026Apr 17, 2026

    • gsfm-predictions

      Public
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•4•0•Updated Apr 17, 2026Apr 17, 2026

    • gsfm

      Public
      The gene set foundation model training, evaluation, and benchmark code.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • docker-base

      Public
      Ma'ayan Lab Base Docker Images
      Dockerfile
      •0•0•0•0•Updated Apr 10, 2026Apr 10, 2026

    • PFOCRummage

      Public
      PLpgSQL
      •
      Other
      •4•1•0•0•Updated Apr 7, 2026Apr 7, 2026

    • ihdh_frontend

      Public
      Innovative Health Data Hub (IHDH) frontend
      JavaScript
      •0•0•6•0•Updated Mar 26, 2026Mar 26, 2026

    • ChEA-KG-UI

      Public
      Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for viewing immediate neighb…
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •19•1•0•0•Updated Mar 23, 2026Mar 23, 2026

    • maayanlab-bioinformatics

      Public
      A collection of useful functions for bioinformatics data analysis
      Python
      •
      Apache License 2.0
      •2•26•0•0•Updated Mar 19, 2026Mar 19, 2026

    • ChEA-KG

      Public
      Demo of how to build a transcription factor KG using the KG UI
      Jupyter Notebook
      •13•1•0•0•Updated Feb 24, 2026Feb 24, 2026

    • Knowledge-Graph-UI

      Public
      Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for viewing immediate neighb…
      neo4jneo4j-databaseknowledge-graph
      neo4jneo4j-databaseknowledge-graphcytoscapenetworksuser-interfacegeneset-enrichmentcytoscapejscypher-query-languagenetworkscience
      TypeScript
      •
      Other
      •19•21•5•1•Updated Feb 18, 2026Feb 18, 2026

    • D2H2-site

      Public
      HTML
      •
      Other
      •0•0•0•1•Updated Feb 17, 2026Feb 17, 2026

    • appyter

      Public
      jinja2-enabled jupyter notebooks
      Python
      •
      Other
      •6•37•15•14•Updated Feb 13, 2026Feb 13, 2026

    • k8s-docs

      Public
      Ma'ayanlab k8s server admin and user guide
      Python
      •
      Other
      •1•0•0•0•Updated Feb 6, 2026Feb 6, 2026

    • HarmonizomePythonScripts

      Public
      Jupyter Notebook
      •10•29•0•1•Updated Feb 6, 2026Feb 6, 2026

    • xalign

      Public
      Hassle-free RNA-seq alignment
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Jan 28, 2026Jan 28, 2026

    • datacrossways_api

      Public
      Oauth flask server
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 26, 2026Jan 26, 2026

    • FAIRshakeInsignia

      Public
      A separate repository for the FAIRshake Insignia Client Javascript Library
      JavaScript
      •
      Other
      •1•0•0•13•Updated Jan 22, 2026Jan 22, 2026

    • Enrichr-Viz-Appyter

      Public
      Appyter for enrichr canvases, scatter plots, and Manhattan plots
      Jupyter Notebook
      •2•0•3•1•Updated Jan 21, 2026Jan 21, 2026

    • L2S2

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•2•1•Updated Jan 14, 2026Jan 14, 2026

    • archs4dx

      Public
      JavaScript
      •
      Apache License 2.0
      •0•1•7•0•Updated Jan 7, 2026Jan 7, 2026

    • croissant-scripts

      Public
      Croissant processing scripts and files for CFDE and Harmonizome datasets
      Jupyter Notebook
      •0•0•0•0•Updated Dec 18, 2025Dec 18, 2025
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