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@LynchLab Lynch Lab | Center for Mechanisms of Evolution | Biodesign Institute at ASU

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    20 repositories

    • ECEE_Hypermutator

      Public
      Python
      •0•0•0•0•Updated Nov 20, 2025Nov 20, 2025

    • ErrorRateAnalysis

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 27, 2025Jun 27, 2025

    • LynchpinWeb

      Public
      HTML
      •0•0•0•0•Updated Mar 13, 2025Mar 13, 2025

    • Asexual-Gaussian-Selection

      Public
      C++
      •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

    • CirSeq4TranscriptErrors

      Public
      Analysis pipelines to call and analyze transcript errors from CirSeq data
      Python
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Apr 15, 2024Apr 15, 2024

    • Fluctuating-Selection

      Public
      C++
      •0•0•0•0•Updated May 2, 2023May 2, 2023

    • Daphnia-egg-bank-models-Drift-Effects

      Public
      C++
      •0•0•0•0•Updated Apr 24, 2023Apr 24, 2023

    • Daphnia-egg-bank-models-Selection-Estimation-Effects

      Public
      C++
      •0•0•0•0•Updated Apr 24, 2023Apr 24, 2023

    • Molecular-Coevolution

      Public
      C++
      •0•0•0•0•Updated Apr 21, 2023Apr 21, 2023

    • ECEE_Starvation

      Public
      Antagonism in Evolutionary Opportunities Results in Non-Monotonic Evolution Across an Environmental Gradient
      Python
      •2•0•0•0•Updated Nov 24, 2021Nov 24, 2021

    • DaphniaPopsCode

      Public
      A repository for the analyses from our Daphnia pops paper
      R
      •3•0•0•0•Updated Apr 7, 2021Apr 7, 2021

    • MAPGD

      Public
      A program for the Maximum-likelihood analysis of population genomic data.
      C++
      •11•30•10•1•Updated Apr 1, 2021Apr 1, 2021

    • BWA-protocol

      Public
      Protocol for making mpileup files from FASTQ files using BWA
      C++
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Dec 20, 2018Dec 20, 2018

    • DaphniaVariantCall

      Public
      Shell
      •3•0•0•1•Updated Dec 20, 2018Dec 20, 2018

    • genomics_simulation

      Public
      C++
      •0•1•0•0•Updated Nov 6, 2018Nov 6, 2018

    • mapgd-parallel

      Public
      Pipelines for NGS genome-mapping, variant-calling and computational population genetics
      Shell
      •1•0•0•0•Updated Oct 29, 2018Oct 29, 2018

    • TranscriptErrors

      Public
      Pipeline for calling transcription errors from a rolling-circle (circ-seq) library
      C++
      •1•3•1•0•Updated Feb 12, 2018Feb 12, 2018

    • QuantGenDocs

      Public
      Matt's random quantgen stuff.
      Python
      •0•0•0•0•Updated Sep 5, 2017Sep 5, 2017

    • DBH_SIMULATIONS

      Public
      Python
      •0•0•0•0•Updated Apr 8, 2016Apr 8, 2016

    • pdsimul

      Public
      Automatically exported from code.google.com/p/pdsimul
      Java
      •0•0•0•0•Updated Mar 13, 2015Mar 13, 2015
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