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lines changed Original file line number Diff line number Diff line change @@ -65,7 +65,7 @@ The acquisition tab makes recording a time lapse of any number of views simple:
6565
6666## Acquisition Controls
6767
68- {% include image src="spimgui -acquiring-annotated.png" width="100%" caption="" %}
68+ {% include image src="Spimgui -acquiring-annotated.png" width="100%" caption="" %}
6969
7070 - (1) Positions List
7171 This table shows the list of stacks of images to acquire. Each time point will consist of the images recorded at each position in this list (as well as the Z slices described by the MATLAB range in the final column).
Original file line number Diff line number Diff line change 1+ ---
2+ ---
3+ # OpenSPIM News
4+
5+ - [ 2015-10-16 Brightfield Illumination by Michael Redd] ( 2015-10-16_Brightfield_illumination_by_Michael_Redd )
6+ - [ 2014-08-15 EMBO practical course on Light Sheet Microscopy] ( 2014-08-15_EMBO_practical_course_on_light_sheet_microscopy )
7+ - [ 2014-04-22_Multiview_deconvolution] ( 2014-04-22_Multiview_deconvolution )
8+ - [ 2014-04-11_Sample_prep_for_Zebrafish_embryo] ( 2014-04-11_Sample_prep_for_Zebrafish_embryo )
9+ - [ 2013-09-28_HFSP_Success_Story_about_the_OpenSPIM_platform] ( 2013-09-28_HFSP_Success_Story_about_the_OpenSPIM_platform )
10+ - [ 2013-07-05_ -_ OpenSPIM_at_MAMED_course] ( 2013-07-05_-_OpenSPIM_at_MAMED_course )
11+ - [ 2013-06-18_ -_ SPIMage_processing_tutorials] ( 2013-06-18_-_SPIMage_processing_tutorials )
12+ - [ 2013-06-10_ -_ The_OpenSPIM_paper_is_out] ( 2013-06-10_-_The_OpenSPIM_paper_is_out )
13+ - [ 2013-05-03_ -_ Recipes_for_SPIM_Analysis_on_a_cluster] ( 2013-05-03_-_Recipes_for_SPIM_Analysis_on_a_cluster )
14+ - [ 2013-04-07_ -_ Open_SPIM_in_South_Africa] ( 2013-04-07_-_Open_SPIM_in_South_Africa )
Original file line number Diff line number Diff line change @@ -92,7 +92,7 @@ The table below lists the parts used by the OpenSPIM for brains setup built by M
9292<td >
9393<a href =" https://github.com/openspim/openspim-parts/blob/master/Chambers/Dry_Objectives_Chamber_and_Holder/Metal_Holder.pdf " >Metal_Holder.pdf</a ><br />
9494<a href =" https://github.com/openspim/openspim-parts/blob/master/Chambers/Dry_Objectives_Chamber_and_Holder/Metal_Holder.step " >Metal_Holder.step</a ></td >
95- <td align =" center " ><img src =" images/holder .PNG " width =40% ></td >
95+ <td align =" center " ><img src =" images/Holder .PNG " width =40% ></td >
9696<td align =" center " >1</td >
9797<td ></td >
9898</tr >
Original file line number Diff line number Diff line change @@ -49,8 +49,8 @@ Whichever wavelength & mW is necessary for your experiments.<br/>
4949<a href =" http://www.vortranlaser.com/ " >VersaLase</a >
5050</td >
5151<td align =" center " >
52- <img src =" images/Laser_cube.jpg " width =" 70% " ><br />
53- <img src =" images/versa -final-sm.jpg " width =" 70% " >
52+ <img src =" images/Laser_cube.jpeg " width =" 70% " ><br />
53+ <img src =" images/Versa -final-sm.jpg " width =" 70% " >
5454</td >
5555<td align =" center " >1</td >
5656<td align =" center " >~7000</td >
Original file line number Diff line number Diff line change @@ -74,11 +74,11 @@ Feel free to edit this page with information about your system! (You will need a
7474
7575{% include image src="20170621_114544.jpg" width="70%" caption="Fig. 2 LED tube light for brightfield" %}
7676
77- {% include image src="adjustable_foot_smaller .jpg" width="70%" caption="Fig. 3 Adjustable foot to align detection arm" %}
77+ {% include image src="Adjustable_foot_smaller .jpg" width="70%" caption="Fig. 3 Adjustable foot to align detection arm" %}
7878
7979{% include image src="Illumination.png" width="70%" caption="Fig. 4 Schematic for illumination between acquisitions" %}
8080
81- {% include image src="sample_holder .png" width="70%" caption="Fig. 5 3D-printed sample holder" %}
81+ {% include image src="Sample_holder .png" width="70%" caption="Fig. 5 3D-printed sample holder" %}
8282
8383# Cambridge, UK, MRC LMB
8484
Original file line number Diff line number Diff line change @@ -51,6 +51,7 @@ <h3>Content</h3>
5151 < div class ='pBody '>
5252 < ul >
5353 < li > < a href ="/index "> Home</ a > </ li >
54+ < li > < a href ="/News "> News</ a > </ li >
5455 < li > < a href ="/Table_of_parts "> Parts list</ a > </ li >
5556 < li > < a href ="/Step_by_step_assembly "> Assembly</ a > </ li >
5657 < li > < a href ="/Operation "> Operation</ a > </ li >
File renamed without changes.
Original file line number Diff line number Diff line change 11---
22---
3- <div cellspacing =" 5 " style =" width : 31em ; font-size : 90% ; text-align :left ; float :right ; position :relative ; border :2px ; border-style :solid ;" >
4-
5- ### News
6-
7- * [ 2015-10-16 Brightfield illumination by Michael Redd] ( /2015-10-16_Brightfield_illumination_by_Michael_Redd )
8- * [ 2014-08-15 EMBO practical course on light sheet microscopy] ( /2014-08-15_EMBO_practical_course_on_light_sheet_microscopy )
9- * [ 2014-04-22 Multiview deconvolution] ( /2014-04-22_Multiview_deconvolution )
10- * [ 2014-04-11 Sample prep for Zebrafish embryo] ( /2014-04-11_Sample_prep_for_Zebrafish_embryo )
11-
12- </div >
13-
143## The Idea
154
165OpenSPIM is an * Open Access* platform for applying and enhancing ** Selective Plane Illumination Microscopy** (* SPIM* ).
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