test: read the instance library from a small library kept with the tests #633

Workflow file for this run

.github/workflows/run_tests.yml at 66dcf6b

	name: Run tests

	on:
	# Triggers the workflow on push to any branch other than main or PR to main
	# This way tests will run on any push to a feature branch and when feature
	# branches are merged to main, but not repeated when PRs are actually merged.
	push:
	branches: [ "main" ]
	paths-ignore:
	- '*.md'
	- '.github/**'
	- '**/Contents.m'
	- '**/codemeta.json'
	pull_request:
	branches: [ "main" ]
	# Allows for manually running this workflow from the Actions tab
	workflow_dispatch:
	# Weekly full-model run, so the exhaustive round-trip sweep is exercised
	# even in weeks without a push to main
	schedule:
	- cron: '0 3 * * 1'

	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	jobs:
	# This workflow contains a single job called "test"
	test:
	name: Test openMINDS_MATLAB (${{ matrix.MATLABVersion }})
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	MATLABVersion: [R2022a, R2026a]
	env:
	LatestMATLABVersion: R2026a

	# Steps represent a sequence of tasks that will be executed as part of the job
	steps:
	# Checks-out the repository under $GITHUB_WORKSPACE, so the job can access it
	- name: Check out repo
	uses: actions/checkout@v6
	with:
	ref: ${{ github.event_name == 'pull_request' && github.head_ref \|\| github.ref_name }}

	- name: Set up MATLAB
	uses: matlab-actions/setup-matlab@v3
	with:
	release: ${{ matrix.MATLABVersion }}

	# Check for MATLAB code issues in the project.
	- name: Check for MATLAB code issues
	if: matrix.MATLABVersion == env.LatestMATLABVersion
	uses: matlab-actions/run-command@v3
	with:
	command: addpath(genpath("tools")); codecheckToolbox()

	# Upload code issues report
	- name: Upload SARIF file
	if: matrix.MATLABVersion == env.LatestMATLABVersion
	uses: github/codeql-action/upload-sarif@v3
	with:
	# Path to SARIF file relative to the root of the repository
	sarif_file: docs/reports/code_issues.sarif

	# The interoperability test builds the same collection with the
	# Python reference implementation and compares the two exports. A
	# pull request runs against a pinned release, so it cannot go red
	# because of a change in the other repository. The weekly schedule
	# runs against main, so drift between the implementations is noticed.
	#
	# The package goes into a virtual environment made from the runner's
	# own Python, and the test calls that interpreter as a subprocess.
	# PATH is left alone on purpose: MATLAB resolves its in-process
	# Python (pyenv) from PATH, and the badge step depends on it.
	- name: Check out openMINDS_Python
	uses: actions/checkout@v6
	with:
	repository: openMetadataInitiative/openMINDS_Python
	ref: ${{ github.event_name == 'schedule' && 'main' \|\| 'v0.6.0' }}
	path: openMINDS_Python

	- name: Install openMINDS_Python
	run: \|
	python3 -m venv "${{ runner.temp }}/openminds-python"
	"${{ runner.temp }}/openminds-python/bin/python" -m pip install --quiet ./openMINDS_Python

	# Run all tests in the project.
	# The round-trip test covers every openMINDS type when
	# OPENMINDS_TEST_ALL_TYPES is set, which takes several minutes. Pull
	# requests run a representative sample instead. The full sweep runs
	# on push to main, which is where the openMINDS pipeline lands
	# regenerated type classes, and on the weekly schedule.
	- name: Run tests
	if: always()
	uses: matlab-actions/run-command@v3
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	OPENMINDS_TEST_ALL_TYPES: ${{ (github.event_name == 'pull_request') && '0' \|\| '1' }}
	OPENMINDS_PYTHON: ${{ runner.temp }}/openminds-python/bin/python
	with:
	command: \|
	addpath(genpath("tools"));
	doCreateBadge = "${{ matrix.MATLABVersion }}" == "${{ env.LatestMATLABVersion }}";
	testToolbox("CreateBadge", doCreateBadge)

	# Commit updated SVG badges for the issues and tests (if changed).
	# Push events only, so badge commits land on main and nowhere else:
	# committing them on a pull_request event rewrites the PR head branch
	# and breaks any stack built on top of it.
	- name: Commit svg badges if updated
	if: matrix.MATLABVersion == env.LatestMATLABVersion && github.event_name == 'push'
	continue-on-error: true
	run: \|
	git config user.name "${{ github.workflow }} by ${{ github.actor }}"
	git config user.email "${{ secrets.COMMIT_EMAIL_ADDRESS }}"
	git fetch

	if [[ $(git add .github/badges/* --dry-run \| wc -l) -gt 0 ]]; then
	git add .github/badges/*
	git commit -m "Update code issues and tests badges"
	git push -f
	else
	echo "Nothing to commit"
	fi

	- name: Upload code coverage report to Codecov (https://app.codecov.io/gh/openMetadataInitiative/openMINDS_MATLAB)
	if: matrix.MATLABVersion == env.LatestMATLABVersion
	uses: codecov/codecov-action@v6
	with:
	token: ${{ secrets.CODECOV_TOKEN }}
	files: docs/reports/codecoverage.xml

	# Publish test results
	- name: Publish test results
	uses: EnricoMi/publish-unit-test-result-action@v2
	if: always()
	with:
	files: "docs/reports/test-results.xml"
	check_name: "Test Results (${{ matrix.MATLABVersion }})"

	# Save the contents of the reports directory as an artifact
	- name: Save reports directory
	uses: actions/upload-artifact@v7
	if: always()
	with:
	name: reports-${{ matrix.MATLABVersion }}
	path: docs/reports

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test: read the instance library from a small library kept with the tests #633

Workflow file

test: read the instance library from a small library kept with the tests #633

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Workflow file for this run