From ccb2cdb47be1c370ba201e4835421ef128825d00 Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Thu, 26 Feb 2026 16:29:24 +0000
Subject: [PATCH 1/2] Initial plan
From 3b62dfda8f1f782866ecf53a6c6b98bd3626eaaa Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Thu, 26 Feb 2026 16:35:09 +0000
Subject: [PATCH 2/2] Fix: Remove incorrect OBI_0000070 annotation property
declaration in component files
OBI:0000070 ('assay') is a class in OBI but was being incorrectly declared
as owl:AnnotationProperty in bgo-cl-comp.owl and wmbo-cl-comp.owl. This
declaration was also used as a predicate in axiom annotations throughout
both files.
Fix: Replace owl:AnnotationProperty declaration for OBI_0000070 with
oboInOwl:evidence in bgo-cl-comp.owl, and replace all usages of
with
in both files. The wmbo-cl-comp.owl already had oboInOwl:evidence declared,
so only the OBI_0000070 declaration was removed there.
Resolves the issue where CL was punning OBI:0000070 as both a class and
an annotation property, which OWL treats in completely different ways.
Signed-off-by: GitHub Copilot
Co-authored-by: cmungall <50745+cmungall@users.noreply.github.com>
---
src/ontology/components/bgo-cl-comp.owl | 118 +++---
src/ontology/components/wmbo-cl-comp.owl | 506 +++++++++++------------
2 files changed, 309 insertions(+), 315 deletions(-)
diff --git a/src/ontology/components/bgo-cl-comp.owl b/src/ontology/components/bgo-cl-comp.owl
index 17cebdb03..73632a6ae 100644
--- a/src/ontology/components/bgo-cl-comp.owl
+++ b/src/ontology/components/bgo-cl-comp.owl
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diff --git a/src/ontology/components/wmbo-cl-comp.owl b/src/ontology/components/wmbo-cl-comp.owl
index 4e5ac4f84..e1238b807 100644
--- a/src/ontology/components/wmbo-cl-comp.owl
+++ b/src/ontology/components/wmbo-cl-comp.owl
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Location assignment based on CCF acronym region.
@@ -20499,7 +20493,7 @@
0.27
-
+
Location assignment based on CCF broad region.
@@ -20576,7 +20570,7 @@
0.94
-
+
Location assignment based on CCF broad region.
@@ -20584,7 +20578,7 @@
0.29
-
+
Location assignment based on CCF acronym region.
@@ -20592,7 +20586,7 @@
0.6
-
+
Location assignment based on CCF acronym region.
@@ -20669,7 +20663,7 @@
0.69
-
+
Location assignment based on CCF broad region.
@@ -20677,7 +20671,7 @@
0.69
-
+
Location assignment based on CCF acronym region.
@@ -20685,7 +20679,7 @@
0.31
-
+
Location assignment based on CCF acronym region.
@@ -20693,7 +20687,7 @@
0.31
-
+
Location assignment based on CCF broad region.
@@ -20771,7 +20765,7 @@
0.78
-
+
Location assignment based on CCF broad region.
@@ -20779,7 +20773,7 @@
0.22
-
+
Location assignment based on CCF acronym region.
@@ -20787,7 +20781,7 @@
0.76
-
+
Location assignment based on CCF acronym region.
@@ -20795,7 +20789,7 @@
0.22
-
+
Location assignment based on CCF broad region.
@@ -20875,7 +20869,7 @@
0.46
-
+
Location assignment based on CCF acronym region.
@@ -20883,7 +20877,7 @@
0.75
-
+
Location assignment based on CCF broad region.
@@ -20891,7 +20885,7 @@
0.19
-
+
Location assignment based on CCF acronym region.
@@ -20899,7 +20893,7 @@
0.29
-
+
Location assignment based on CCF acronym region.
@@ -20907,7 +20901,7 @@
0.25
-
+
Location assignment based on CCF broad region.
@@ -20995,7 +20989,7 @@
0.48
-
+
Location assignment based on CCF acronym region.
@@ -21003,7 +20997,7 @@
0.11
-
+
Location assignment based on CCF acronym region.
@@ -21011,7 +21005,7 @@
0.32
-
+
Location assignment based on CCF broad region.
@@ -21019,7 +21013,7 @@
0.23
-
+
Location assignment based on CCF acronym region.
@@ -21027,7 +21021,7 @@
0.68
-
+
Location assignment based on CCF broad region.
@@ -21111,7 +21105,7 @@
0.1
-
+
Location assignment based on CCF acronym region.
@@ -21119,7 +21113,7 @@
0.49
-
+
Location assignment based on CCF acronym region.
@@ -21127,7 +21121,7 @@
0.24
-
+
Location assignment based on CCF broad region.
@@ -21135,7 +21129,7 @@
0.74
-
+
Location assignment based on CCF broad region.
@@ -21223,7 +21217,7 @@
0.18
-
+
Location assignment based on CCF acronym region.
@@ -21231,7 +21225,7 @@
0.22
-
+
Location assignment based on CCF acronym region.
@@ -21239,7 +21233,7 @@
0.81
-
+
Location assignment based on CCF broad region.
@@ -21314,7 +21308,7 @@
0.52
-
+
Location assignment based on CCF broad region.
@@ -21322,7 +21316,7 @@
0.14
-
+
Location assignment based on CCF broad region.
@@ -21400,7 +21394,7 @@
0.21
-
+
Location assignment based on CCF broad region.
@@ -21408,7 +21402,7 @@
0.13
-
+
Location assignment based on CCF broad region.
@@ -21416,7 +21410,7 @@
0.14
-
+
Location assignment based on CCF broad region.
@@ -21424,7 +21418,7 @@
0.17
-
+
Location assignment based on CCF broad region.
@@ -21432,7 +21426,7 @@
0.23
-
+
Location assignment based on CCF broad region.
@@ -21508,7 +21502,7 @@
0.53
-
+
Location assignment based on CCF broad region.
@@ -21516,7 +21510,7 @@
0.12
-
+
Location assignment based on CCF broad region.
@@ -21524,7 +21518,7 @@
0.1
-
+
Location assignment based on CCF broad region.
@@ -21600,7 +21594,7 @@
0.17
-
+
Location assignment based on CCF broad region.
@@ -21608,7 +21602,7 @@
0.11
-
+
Location assignment based on CCF broad region.
@@ -21616,7 +21610,7 @@
0.16
-
+
Location assignment based on CCF broad region.
@@ -21693,7 +21687,7 @@
0.17
-
+
Location assignment based on CCF broad region.
@@ -21701,7 +21695,7 @@
0.39
-
+
Location assignment based on CCF broad region.
@@ -21709,7 +21703,7 @@
0.1
-
+
Location assignment based on CCF broad region.
@@ -21717,7 +21711,7 @@
0.1
-
+
Location assignment based on CCF broad region.
@@ -21793,7 +21787,7 @@
0.26
-
+
Location assignment based on CCF broad region.
@@ -21801,7 +21795,7 @@
0.17
-
+
Location assignment based on CCF broad region.
@@ -21876,7 +21870,7 @@
0.22
-
+
Location assignment based on CCF broad region.
@@ -21884,7 +21878,7 @@
0.2
-
+
Location assignment based on CCF broad region.
@@ -21959,7 +21953,7 @@
0.33
-
+
Location assignment based on CCF broad region.
@@ -21967,7 +21961,7 @@
0.2
-
+
Location assignment based on CCF broad region.
@@ -22041,7 +22035,7 @@
0.41
-
+
Location assignment based on CCF broad region.
@@ -22115,7 +22109,7 @@
0.37
-
+
Location assignment based on CCF broad region.
@@ -22189,7 +22183,7 @@
0.51
-
+
Location assignment based on CCF broad region.
@@ -22265,7 +22259,7 @@
0.54
-
+
Location assignment based on CCF broad region.
@@ -22273,7 +22267,7 @@
0.11
-
+
Location assignment based on CCF broad region.
@@ -22281,7 +22275,7 @@
0.1
-
+
Location assignment based on CCF broad region.
@@ -22357,7 +22351,7 @@
0.31
-
+
Location assignment based on CCF broad region.
@@ -22365,7 +22359,7 @@
0.1
-
+
Location assignment based on CCF broad region.
@@ -22373,7 +22367,7 @@
0.12
-
+
Location assignment based on CCF broad region.
@@ -22448,7 +22442,7 @@
0.24
-
+
Location assignment based on CCF broad region.
@@ -22456,7 +22450,7 @@
0.25
-
+
Location assignment based on CCF broad region.
@@ -22531,7 +22525,7 @@
0.18
-
+
Location assignment based on CCF broad region.
@@ -22539,7 +22533,7 @@
0.28
-
+
Location assignment based on CCF broad region.
@@ -22614,7 +22608,7 @@
0.19
-
+
Location assignment based on CCF broad region.
@@ -22622,7 +22616,7 @@
0.3
-
+
Location assignment based on CCF broad region.
@@ -22697,7 +22691,7 @@
0.26
-
+
Location assignment based on CCF broad region.
@@ -22705,7 +22699,7 @@
0.26
-
+
Location assignment based on CCF broad region.
@@ -22781,7 +22775,7 @@
0.1
-
+
Location assignment based on CCF broad region.
@@ -22789,7 +22783,7 @@
0.17
-
+
Location assignment based on CCF broad region.
@@ -22797,7 +22791,7 @@
0.29
-
+
Location assignment based on CCF broad region.
@@ -22872,7 +22866,7 @@
0.11
-
+
Location assignment based on CCF broad region.
@@ -22880,7 +22874,7 @@
0.37
-
+
Location assignment based on CCF broad region.
@@ -22956,7 +22950,7 @@
0.14
-
+
Location assignment based on CCF broad region.
@@ -22964,7 +22958,7 @@
0.13
-
+
Location assignment based on CCF broad region.
@@ -22972,7 +22966,7 @@
0.27
-
+
Location assignment based on CCF broad region.
@@ -23048,7 +23042,7 @@
0.17
-
+
Location assignment based on CCF broad region.
@@ -23056,7 +23050,7 @@
0.15
-
+
Location assignment based on CCF broad region.
@@ -23064,7 +23058,7 @@
0.44
-
+
Location assignment based on CCF broad region.
@@ -23139,7 +23133,7 @@
0.17
-
+
Location assignment based on CCF broad region.
@@ -23147,7 +23141,7 @@
0.41
-
+
Location assignment based on CCF broad region.
@@ -23222,7 +23216,7 @@
0.11
-
+
Location assignment based on CCF broad region.
@@ -23230,7 +23224,7 @@
0.41
-
+
Location assignment based on CCF broad region.
@@ -23305,7 +23299,7 @@
0.15
-
+
Location assignment based on CCF acronym region.
@@ -23313,7 +23307,7 @@
0.89
-
+
Location assignment based on CCF broad region.
@@ -23388,7 +23382,7 @@
0.39
-
+
Location assignment based on CCF acronym region.
@@ -23396,7 +23390,7 @@
0.8
-
+
Location assignment based on CCF broad region.
@@ -23473,7 +23467,7 @@
0.14
-
+
Location assignment based on CCF acronym region.
@@ -23481,7 +23475,7 @@
0.16
-
+
Location assignment based on CCF acronym region.
@@ -23489,7 +23483,7 @@
0.36
-
+
Location assignment based on CCF broad region.
@@ -23497,7 +23491,7 @@
0.64
-
+
Location assignment based on CCF broad region.
@@ -23583,7 +23577,7 @@
0.85
-
+
Location assignment based on CCF broad region.
@@ -23657,7 +23651,7 @@
0.73
-
+
Location assignment based on CCF broad region.
@@ -23731,7 +23725,7 @@
0.76
-
+
Location assignment based on CCF broad region.
@@ -23805,7 +23799,7 @@
0.74
-
+
Location assignment based on CCF broad region.
@@ -23889,7 +23883,7 @@
0.29
-
+
Location assignment based on CCF broad region.
@@ -23897,7 +23891,7 @@
0.17
-
+
Location assignment based on CCF broad region.
@@ -23973,7 +23967,7 @@
0.1
-
+
Location assignment based on CCF broad region.
@@ -23981,7 +23975,7 @@
0.13
-
+
Location assignment based on CCF broad region.
@@ -23989,7 +23983,7 @@
0.34
-
+
Location assignment based on CCF broad region.
@@ -24065,7 +24059,7 @@
0.14
-
+
Location assignment based on CCF broad region.
@@ -24073,7 +24067,7 @@
0.16
-
+
Location assignment based on CCF broad region.
@@ -24081,7 +24075,7 @@
0.26
-
+
Location assignment based on CCF broad region.