.gitignore

# ODK-managed rules, do not modify
# If you need to add your own ignore rules, you may do so below
# the "End ODK-managed rules" marker at the end of this file.
.DS_Store
semantic.cache
bin/

*.tmp
*.tmp.obo
*.tmp.owl
*.tmp.json
*-relation-graph.tsv.gz
.template.db

.github/token.txt

/cl.owl
/cl.obo
/cl.json
/cl.db
/cl-base.*
/cl-basic.*
/cl-full.*
/cl-simple.*
/cl-simple-non-classified.*
/mappings/
/patterns/
/reports/
/subsets/

src/ontology/mirror
src/ontology/mirror/*
src/ontology/reports/*
!src/ontology/reports/release-diff.md
src/ontology/cl.owl
src/ontology/cl.obo
src/ontology/cl.json
src/ontology/cl.db
src/ontology/cl-base.*
src/ontology/cl-basic.*
src/ontology/cl-full.*
src/ontology/cl-simple.*
src/ontology/cl-simple-non-classified.*

src/ontology/seed.txt
src/ontology/dosdp-tools.log
src/ontology/ed_definitions_merged.owl
src/ontology/ontologyterms.txt
src/ontology/simple_seed.txt
src/ontology/patterns
src/ontology/merged-cl-edit.owl
src/ontology/cl-edit.properties

src/ontology/target/
src/ontology/tmp/*
!src/ontology/tmp/.gitkeep
!src/ontology/tmp/README.md

src/ontology/run.sh.conf
src/ontology/run.sh.env

src/ontology/imports/*_terms_combined.txt

src/patterns/data/**/*.ofn
src/patterns/data/**/*.txt
src/patterns/pattern_owl_seed.txt
src/patterns/all_pattern_terms.txt

# End of ODK-managed rules

# Extra products
cl-non-classified.*
cl-plus.*

# SemSQL files (compressed and uncompressed)
*.db
*.db.gz

# Auto-generated mapping files
src/mappings/cl-local.sssom.tsv
src/mappings/cl.sssom.tsv

# Subsets
src/ontology/subsets/BDS_subset.*
src/ontology/subsets/*-view.*
src/ontology/subsets/*-tags.*
src/ontology/subsets/*_slim.*

# That file now lives in src/ontology/tmp, but
# just in case someone still has it around
src/ontology/cl-check.obo

# Additional reports
!src/ontology/reports/cl-base-diff.md
!src/ontology/reports/summary_release.md

# Misc, unsure if still needed
*.backup
.idea
tools/
src/patterns/imports/seed_sorted.txt
src/ontology/remove_template_classes_from_edit.txt
src/ontology/tmp.txt