diff --git a/.github/workflows/lint_component.yml b/.github/workflows/lint_component.yml
index 0efe3147..ee28f85d 100644
--- a/.github/workflows/lint_component.yml
+++ b/.github/workflows/lint_component.yml
@@ -97,6 +97,7 @@ jobs:
       - name: Convert component meta.yml to markdown
         run: |
           poetry run nf-neuro-convert-${{ inputs.type }} \
+            --enhance-keywords \
             ${{ inputs.type }}s/nf-neuro/${{ inputs.component }} \
             ${{ github.sha }} \
             $(echo "${{ inputs.component }}" | sed 's/\//_/g').md
diff --git a/docs/astro/convert_module.py b/docs/astro/convert_module.py
index bb19bc10..d5d84ef7 100644
--- a/docs/astro/convert_module.py
+++ b/docs/astro/convert_module.py
@@ -13,6 +13,7 @@
     li,
     link,
 )
+from docs.astro.keywords import DEFAULT_MODEL, extract_keywords
 
 
 def _create_parser():
@@ -23,6 +24,14 @@ def _create_parser():
     p.add_argument('module_path', help='Path to the module')
     p.add_argument('current_commit_sha', help='Current commit sha')
     p.add_argument('output', help='Name of the output markdown file')
+    p.add_argument(
+        '--enhance-keywords', action='store_true', default=False,
+        help='Use an LLM via Ollama to extract additional SEO keywords'
+    )
+    p.add_argument(
+        '--llm-model', default=DEFAULT_MODEL, metavar='MODEL',
+        help=f'Ollama model used for keyword extraction (default: {DEFAULT_MODEL})'
+    )
 
     return p
 
@@ -51,6 +60,9 @@ def main():
     data["currentcommit"] = args.current_commit_sha
     data["currentdate"] = datetime.datetime.now().strftime("%Y-%m-%d")
 
+    if args.enhance_keywords:
+        data["keywords"] = extract_keywords(data, model=args.llm_model)
+
     template = env.get_template('module.md.jinja2')
     output_path = Path(args.output)
     output_path.write_text(template.render(**data))
diff --git a/docs/astro/convert_subworkflow.py b/docs/astro/convert_subworkflow.py
index 8409e5ee..53d9a187 100644
--- a/docs/astro/convert_subworkflow.py
+++ b/docs/astro/convert_subworkflow.py
@@ -14,6 +14,7 @@
     link,
     sanitize_outside_codeblocks,
 )
+from docs.astro.keywords import DEFAULT_MODEL, extract_keywords
 
 
 DOC_URL_BASE = "https://nf-neuro.github.io"
@@ -71,6 +72,14 @@ def _create_parser():
     p.add_argument('subworkflow_path', help='Name of the subworkflow')
     p.add_argument('current_commit_sha', help='Current commit sha')
     p.add_argument('output', help='Name of the output markdown file')
+    p.add_argument(
+        '--enhance-keywords', action='store_true', default=False,
+        help='Use an LLM via Ollama to extract additional SEO keywords'
+    )
+    p.add_argument(
+        '--llm-model', default=DEFAULT_MODEL, metavar='MODEL',
+        help=f'Ollama model used for keyword extraction (default: {DEFAULT_MODEL})'
+    )
 
     return p
 
@@ -99,6 +108,9 @@ def main():
     data["currentcommit"] = args.current_commit_sha
     data["currentdate"] = datetime.datetime.now().strftime("%Y-%m-%d")
 
+    if args.enhance_keywords:
+        data["keywords"] = extract_keywords(data, model=args.llm_model)
+
     template = env.get_template('subworkflow.md.jinja2')
     output_path = Path(args.output)
     output_path.write_text(template.render(**data))
diff --git a/docs/astro/keywords.py b/docs/astro/keywords.py
new file mode 100644
index 00000000..49884188
--- /dev/null
+++ b/docs/astro/keywords.py
@@ -0,0 +1,122 @@
+"""
+LLM-powered keyword extraction for nf-neuro documentation.
+
+Uses Ollama with the qwen3 model to generate additional relevant keywords
+from meta.yml data, improving discoverability on the website and in search
+engines.
+"""
+
+import json
+import logging
+
+log = logging.getLogger(__name__)
+
+DEFAULT_MODEL = "qwen3"
+
+
+def _build_prompt(data):
+    """Build a keyword-extraction prompt from meta.yml data."""
+    name = data.get("name", "")
+    description = data.get("description", "")
+    existing_keywords = data.get("keywords", [])
+    tools = data.get("tools", [])
+
+    tool_names = []
+    tool_descriptions = []
+    for tool in tools:
+        for tool_name, tool_meta in tool.items():
+            tool_names.append(tool_name)
+            if isinstance(tool_meta, dict) and "description" in tool_meta:
+                tool_descriptions.append(
+                    f"{tool_name}: {tool_meta['description'].strip()}"
+                )
+
+    prompt = (
+        "You are a scientific SEO expert specialising in neuroimaging and "
+        "bioinformatics software.\n\n"
+        "Given the following information about a Nextflow module for neuroimaging "
+        "data processing, extract a list of relevant keywords for SEO and search "
+        "discoverability. Focus on technical terms, neuroimaging concepts, "
+        "computational methods, data types, and scientific domains relevant to "
+        "the module.\n\n"
+        f"Module name: {name}\n"
+        f"Description: {description}\n"
+        f"Existing keywords: {', '.join(existing_keywords)}\n"
+        f"Tools used: {', '.join(tool_names)}\n"
+        f"Tool descriptions: {'; '.join(tool_descriptions)}\n\n"
+        "Return ONLY a JSON array of 5 to 15 additional keyword strings that are "
+        "NOT already present in the existing keywords list. Keywords should be "
+        "specific, relevant, and useful for search engines. Do not include "
+        "explanations or any other text outside the JSON array.\n\n"
+        'Example format: ["keyword1", "keyword2", "keyword3"]'
+    )
+    return prompt
+
+
+def extract_keywords(data, model=DEFAULT_MODEL):
+    """Extract additional keywords from meta.yml data using an LLM via Ollama.
+
+    Calls the specified Ollama model to generate SEO-relevant keywords that
+    complement the existing ones defined in the meta.yml file. Falls back to
+    the original keyword list gracefully when Ollama is unavailable or the
+    model call fails.
+
+    Parameters
+    ----------
+    data : dict
+        Parsed meta.yml data.
+    model : str, optional
+        Ollama model name to use for keyword extraction (default: ``qwen3``).
+
+    Returns
+    -------
+    list[str]
+        Augmented list of keywords combining the original entries with any
+        additional ones produced by the LLM, deduplicated and in order.
+    """
+    existing_keywords = data.get("keywords", []) or []
+
+    try:
+        import ollama
+
+        prompt = _build_prompt(data)
+        response = ollama.chat(
+            model=model,
+            messages=[{"role": "user", "content": prompt}],
+            options={"temperature": 0.2},
+        )
+        content = response.message.content.strip()
+
+        # Locate the first JSON array in the response using bracket matching
+        # to handle nested arrays and avoid capturing partial results.
+        start = content.find("[")
+        if start != -1:
+            depth = 0
+            end = -1
+            for i, ch in enumerate(content[start:], start):
+                if ch == "[":
+                    depth += 1
+                elif ch == "]":
+                    depth -= 1
+                    if depth == 0:
+                        end = i + 1
+                        break
+            if end != -1:
+                new_keywords = json.loads(content[start:end])
+                if isinstance(new_keywords, list):
+                    existing_lower = {k.lower() for k in existing_keywords}
+                    additional = [
+                        k
+                        for k in new_keywords
+                        if isinstance(k, str) and k.lower() not in existing_lower
+                    ]
+                    return existing_keywords + additional
+
+        log.warning(
+            "LLM response did not contain a parseable JSON keyword array; "
+            "using original keywords."
+        )
+    except Exception as exc:
+        log.warning("LLM keyword extraction failed (%s); using original keywords.", exc)
+
+    return existing_keywords
diff --git a/modules/nf-neuro/bundle/bundleparc/meta.yml b/modules/nf-neuro/bundle/bundleparc/meta.yml
index 81168a65..c054c4f6 100755
--- a/modules/nf-neuro/bundle/bundleparc/meta.yml
+++ b/modules/nf-neuro/bundle/bundleparc/meta.yml
@@ -1,5 +1,5 @@
 name: bundle_bundleparc
-description: process bundleparc
+description: Extract label maps of bundles using the bundleparc machine learning model.
 keywords:
   - Tractography
   - Bundleparc
diff --git a/poetry.lock b/poetry.lock
index 0b69523d..effde773 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand.
+# This file is automatically @generated by Poetry 2.3.4 and should not be changed by hand.
 
 [[package]]
 name = "annotated-doc"
@@ -6,6 +6,7 @@ version = "0.0.4"
 description = "Document parameters, class attributes, return types, and variables inline, with Annotated."
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "annotated_doc-0.0.4-py3-none-any.whl", hash = "sha256:571ac1dc6991c450b25a9c2d84a3705e2ae7a53467b5d111c24fa8baabbed320"},
     {file = "annotated_doc-0.0.4.tar.gz", hash = "sha256:fbcda96e87e9c92ad167c2e53839e57503ecfda18804ea28102353485033faa4"},
@@ -17,17 +18,40 @@ version = "0.7.0"
 description = "Reusable constraint types to use with typing.Annotated"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"},
     {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"},
 ]
 
+[[package]]
+name = "anyio"
+version = "4.13.0"
+description = "High-level concurrency and networking framework on top of asyncio or Trio"
+optional = true
+python-versions = ">=3.10"
+groups = ["main"]
+markers = "extra == \"docs\""
+files = [
+    {file = "anyio-4.13.0-py3-none-any.whl", hash = "sha256:08b310f9e24a9594186fd75b4f73f4a4152069e3853f1ed8bfbf58369f4ad708"},
+    {file = "anyio-4.13.0.tar.gz", hash = "sha256:334b70e641fd2221c1505b3890c69882fe4a2df910cba14d97019b90b24439dc"},
+]
+
+[package.dependencies]
+exceptiongroup = {version = ">=1.0.2", markers = "python_version < \"3.11\""}
+idna = ">=2.8"
+typing_extensions = {version = ">=4.5", markers = "python_version < \"3.13\""}
+
+[package.extras]
+trio = ["trio (>=0.32.0)"]
+
 [[package]]
 name = "arcp"
 version = "0.2.1"
 description = "arcp (Archive and Package) URI parser and generator"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "arcp-0.2.1-py2.py3-none-any.whl", hash = "sha256:4e09b2d8a9fc3fda7ec112b553498ff032ea7de354e27dbeb1acc53667122444"},
     {file = "arcp-0.2.1.tar.gz", hash = "sha256:5c17ac7972c9ef82979cc2caf2b3a87c1aefd3fefe9adb8a5dd728ada57715dd"},
@@ -39,6 +63,7 @@ version = "26.1.0"
 description = "Classes Without Boilerplate"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "attrs-26.1.0-py3-none-any.whl", hash = "sha256:c647aa4a12dfbad9333ca4e71fe62ddc36f4e63b2d260a37a8b83d2f043ac309"},
     {file = "attrs-26.1.0.tar.gz", hash = "sha256:d03ceb89cb322a8fd706d4fb91940737b6642aa36998fe130a9bc96c985eff32"},
@@ -50,6 +75,7 @@ version = "26.3.1"
 description = "The uncompromising code formatter."
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "black-26.3.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:86a8b5035fce64f5dcd1b794cf8ec4d31fe458cf6ce3986a30deb434df82a1d2"},
     {file = "black-26.3.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:5602bdb96d52d2d0672f24f6ffe5218795736dd34807fd0fd55ccd6bf206168b"},
@@ -94,7 +120,7 @@ typing-extensions = {version = ">=4.0.1", markers = "python_version < \"3.11\""}
 colorama = ["colorama (>=0.4.3)"]
 d = ["aiohttp (>=3.10)"]
 jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"]
-uvloop = ["uvloop (>=0.15.2)", "winloop (>=0.5.0)"]
+uvloop = ["uvloop (>=0.15.2) ; sys_platform != \"win32\"", "winloop (>=0.5.0) ; sys_platform == \"win32\""]
 
 [[package]]
 name = "cattrs"
@@ -102,6 +128,7 @@ version = "26.1.0"
 description = "Composable complex class support for attrs and dataclasses."
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "cattrs-26.1.0-py3-none-any.whl", hash = "sha256:d1e0804c42639494d469d08d4f26d6b9de9b8ab26b446db7b5f8c2e97f7c3096"},
     {file = "cattrs-26.1.0.tar.gz", hash = "sha256:fa239e0f0ec0715ba34852ce813986dfed1e12117e209b816ab87401271cdd40"},
@@ -116,11 +143,11 @@ typing-extensions = ">=4.14.0"
 bson = ["pymongo (>=4.4.0)"]
 cbor2 = ["cbor2 (>=5.4.6)"]
 msgpack = ["msgpack (>=1.0.5)"]
-msgspec = ["msgspec (>=0.19.0)"]
-orjson = ["orjson (>=3.11.3)"]
+msgspec = ["msgspec (>=0.19.0) ; implementation_name == \"cpython\""]
+orjson = ["orjson (>=3.11.3) ; implementation_name == \"cpython\""]
 pyyaml = ["pyyaml (>=6.0)"]
 tomlkit = ["tomlkit (>=0.11.8)"]
-tomllib = ["tomli (>=1.1.0)", "tomli-w (>=1.1.0)"]
+tomllib = ["tomli (>=1.1.0) ; python_version < \"3.11\"", "tomli-w (>=1.1.0)"]
 ujson = ["ujson (>=5.10.0)"]
 
 [[package]]
@@ -129,6 +156,7 @@ version = "2026.2.25"
 description = "Python package for providing Mozilla's CA Bundle."
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "certifi-2026.2.25-py3-none-any.whl", hash = "sha256:027692e4402ad994f1c42e52a4997a9763c646b73e4096e4d5d6db8af1d6f0fa"},
     {file = "certifi-2026.2.25.tar.gz", hash = "sha256:e887ab5cee78ea814d3472169153c2d12cd43b14bd03329a39a9c6e2e80bfba7"},
@@ -140,6 +168,8 @@ version = "2.0.0"
 description = "Foreign Function Interface for Python calling C code."
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
+markers = "platform_python_implementation != \"PyPy\""
 files = [
     {file = "cffi-2.0.0-cp310-cp310-macosx_10_13_x86_64.whl", hash = "sha256:0cf2d91ecc3fcc0625c2c530fe004f82c110405f101548512cce44322fa8ac44"},
     {file = "cffi-2.0.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:f73b96c41e3b2adedc34a7356e64c8eb96e03a3782b535e043a986276ce12a49"},
@@ -236,6 +266,7 @@ version = "3.5.0"
 description = "Validate configuration and produce human readable error messages."
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "cfgv-3.5.0-py2.py3-none-any.whl", hash = "sha256:a8dc6b26ad22ff227d2634a65cb388215ce6cc96bbcc5cfde7641ae87e8dacc0"},
     {file = "cfgv-3.5.0.tar.gz", hash = "sha256:d5b1034354820651caa73ede66a6294d6e95c1b00acc5e9b098e917404669132"},
@@ -247,6 +278,7 @@ version = "3.4.7"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "charset_normalizer-3.4.7-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:cdd68a1fb318e290a2077696b7eb7a21a49163c455979c639bf5a5dcdc46617d"},
     {file = "charset_normalizer-3.4.7-cp310-cp310-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:e17b8d5d6a8c47c85e68ca8379def1303fd360c3e22093a807cd34a71cd082b8"},
@@ -385,6 +417,7 @@ version = "8.3.2"
 description = "Composable command line interface toolkit"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "click-8.3.2-py3-none-any.whl", hash = "sha256:1924d2c27c5653561cd2cae4548d1406039cb79b858b747cfea24924bbc1616d"},
     {file = "click-8.3.2.tar.gz", hash = "sha256:14162b8b3b3550a7d479eafa77dfd3c38d9dc8951f6f69c78913a8f9a7540fd5"},
@@ -399,6 +432,7 @@ version = "0.4.6"
 description = "Cross-platform colored terminal text."
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
+groups = ["main"]
 files = [
     {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"},
     {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"},
@@ -410,6 +444,7 @@ version = "15.0.1"
 description = "Colored terminal output for Python's logging module"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+groups = ["main"]
 files = [
     {file = "coloredlogs-15.0.1-py2.py3-none-any.whl", hash = "sha256:612ee75c546f53e92e70049c9dbfcc18c935a2b9a53b66085ce9ef6a6e5c0934"},
     {file = "coloredlogs-15.0.1.tar.gz", hash = "sha256:7c991aa71a4577af2f82600d8f8f3a89f936baeaf9b50a9c197da014e5bf16b0"},
@@ -427,6 +462,7 @@ version = "46.0.7"
 description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
 optional = false
 python-versions = "!=3.9.0,!=3.9.1,>=3.8"
+groups = ["main"]
 files = [
     {file = "cryptography-46.0.7-cp311-abi3-macosx_10_9_universal2.whl", hash = "sha256:ea42cbe97209df307fdc3b155f1b6fa2577c0defa8f1f7d3be7d31d189108ad4"},
     {file = "cryptography-46.0.7-cp311-abi3-manylinux2014_aarch64.manylinux_2_17_aarch64.whl", hash = "sha256:b36a4695e29fe69215d75960b22577197aca3f7a25b9cf9d165dcfe9d80bc325"},
@@ -480,8 +516,8 @@ files = [
 ]
 
 [package.dependencies]
-cffi = {version = ">=2.0.0", markers = "python_full_version >= \"3.9\" and platform_python_implementation != \"PyPy\""}
-typing-extensions = {version = ">=4.13.2", markers = "python_full_version < \"3.11\""}
+cffi = {version = ">=2.0.0", markers = "python_full_version >= \"3.9.0\" and platform_python_implementation != \"PyPy\""}
+typing-extensions = {version = ">=4.13.2", markers = "python_full_version < \"3.11.0\""}
 
 [package.extras]
 docs = ["sphinx (>=5.3.0)", "sphinx-inline-tabs", "sphinx-rtd-theme (>=3.0.0)"]
@@ -499,6 +535,7 @@ version = "0.4.0"
 description = "Distribution utilities"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "distlib-0.4.0-py2.py3-none-any.whl", hash = "sha256:9659f7d87e46584a30b5780e43ac7a2143098441670ff0a49d5f9034c54a6c16"},
     {file = "distlib-0.4.0.tar.gz", hash = "sha256:feec40075be03a04501a973d81f633735b4b69f98b05450592310c0f401a4e0d"},
@@ -510,6 +547,7 @@ version = "0.2.5"
 description = "A project metadata validator"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "eido-0.2.5-py3-none-any.whl", hash = "sha256:2d14b4923c52bc3554c7d016c0f638fdd61a8e083c3917f44988e2e598c58491"},
     {file = "eido-0.2.5.tar.gz", hash = "sha256:38c21e8678a4e37e2b0680225dd4cabe68482b5156c252199838faa06d7adf47"},
@@ -528,6 +566,8 @@ version = "1.3.1"
 description = "Backport of PEP 654 (exception groups)"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "python_version == \"3.10\""
 files = [
     {file = "exceptiongroup-1.3.1-py3-none-any.whl", hash = "sha256:a7a39a3bd276781e98394987d3a5701d0c4edffb633bb7a5144577f82c773598"},
     {file = "exceptiongroup-1.3.1.tar.gz", hash = "sha256:8b412432c6055b0b7d14c310000ae93352ed6754f70fa8f7c34141f91c4e3219"},
@@ -545,6 +585,7 @@ version = "3.25.2"
 description = "A platform independent file lock."
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "filelock-3.25.2-py3-none-any.whl", hash = "sha256:ca8afb0da15f229774c9ad1b455ed96e85a81373065fb10446672f64444ddf70"},
     {file = "filelock-3.25.2.tar.gz", hash = "sha256:b64ece2b38f4ca29dd3e810287aa8c48182bbecd1ae6e9ae126c9b35f1382694"},
@@ -556,6 +597,7 @@ version = "1.2.0"
 description = "Infer file type and MIME type of any file/buffer. No external dependencies."
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "filetype-1.2.0-py2.py3-none-any.whl", hash = "sha256:7ce71b6880181241cf7ac8697a2f1eb6a8bd9b429f7ad6d27b8db9ba5f1c2d25"},
     {file = "filetype-1.2.0.tar.gz", hash = "sha256:66b56cd6474bf41d8c54660347d37afcc3f7d1970648de365c102ef77548aadb"},
@@ -567,6 +609,7 @@ version = "4.0.12"
 description = "Git Object Database"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "gitdb-4.0.12-py3-none-any.whl", hash = "sha256:67073e15955400952c6565cc3e707c554a4eea2e428946f7a4c162fab9bd9bcf"},
     {file = "gitdb-4.0.12.tar.gz", hash = "sha256:5ef71f855d191a3326fcfbc0d5da835f26b13fbcba60c32c21091c349ffdb571"},
@@ -581,6 +624,7 @@ version = "3.1.46"
 description = "GitPython is a Python library used to interact with Git repositories"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "gitpython-3.1.46-py3-none-any.whl", hash = "sha256:79812ed143d9d25b6d176a10bb511de0f9c67b1fa641d82097b0ab90398a2058"},
     {file = "gitpython-3.1.46.tar.gz", hash = "sha256:400124c7d0ef4ea03f7310ac2fbf7151e09ff97f2a3288d64a440c584a29c37f"},
@@ -591,7 +635,69 @@ gitdb = ">=4.0.1,<5"
 
 [package.extras]
 doc = ["sphinx (>=7.1.2,<7.2)", "sphinx-autodoc-typehints", "sphinx_rtd_theme"]
-test = ["coverage[toml]", "ddt (>=1.1.1,!=1.4.3)", "mock", "mypy (==1.18.2)", "pre-commit", "pytest (>=7.3.1)", "pytest-cov", "pytest-instafail", "pytest-mock", "pytest-sugar", "typing-extensions"]
+test = ["coverage[toml]", "ddt (>=1.1.1,!=1.4.3)", "mock ; python_version < \"3.8\"", "mypy (==1.18.2) ; python_version >= \"3.9\"", "pre-commit", "pytest (>=7.3.1)", "pytest-cov", "pytest-instafail", "pytest-mock", "pytest-sugar", "typing-extensions ; python_version < \"3.11\""]
+
+[[package]]
+name = "h11"
+version = "0.16.0"
+description = "A pure-Python, bring-your-own-I/O implementation of HTTP/1.1"
+optional = true
+python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\""
+files = [
+    {file = "h11-0.16.0-py3-none-any.whl", hash = "sha256:63cf8bbe7522de3bf65932fda1d9c2772064ffb3dae62d55932da54b31cb6c86"},
+    {file = "h11-0.16.0.tar.gz", hash = "sha256:4e35b956cf45792e4caa5885e69fba00bdbc6ffafbfa020300e549b208ee5ff1"},
+]
+
+[[package]]
+name = "httpcore"
+version = "1.0.9"
+description = "A minimal low-level HTTP client."
+optional = true
+python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\""
+files = [
+    {file = "httpcore-1.0.9-py3-none-any.whl", hash = "sha256:2d400746a40668fc9dec9810239072b40b4484b640a8c38fd654a024c7a1bf55"},
+    {file = "httpcore-1.0.9.tar.gz", hash = "sha256:6e34463af53fd2ab5d807f399a9b45ea31c3dfa2276f15a2c3f00afff6e176e8"},
+]
+
+[package.dependencies]
+certifi = "*"
+h11 = ">=0.16"
+
+[package.extras]
+asyncio = ["anyio (>=4.0,<5.0)"]
+http2 = ["h2 (>=3,<5)"]
+socks = ["socksio (==1.*)"]
+trio = ["trio (>=0.22.0,<1.0)"]
+
+[[package]]
+name = "httpx"
+version = "0.28.1"
+description = "The next generation HTTP client."
+optional = true
+python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\""
+files = [
+    {file = "httpx-0.28.1-py3-none-any.whl", hash = "sha256:d909fcccc110f8c7faf814ca82a9a4d816bc5a6dbfea25d6591d6985b8ba59ad"},
+    {file = "httpx-0.28.1.tar.gz", hash = "sha256:75e98c5f16b0f35b567856f597f06ff2270a374470a5c2392242528e3e3e42fc"},
+]
+
+[package.dependencies]
+anyio = "*"
+certifi = "*"
+httpcore = "==1.*"
+idna = "*"
+
+[package.extras]
+brotli = ["brotli ; platform_python_implementation == \"CPython\"", "brotlicffi ; platform_python_implementation != \"CPython\""]
+cli = ["click (==8.*)", "pygments (==2.*)", "rich (>=10,<14)"]
+http2 = ["h2 (>=3,<5)"]
+socks = ["socksio (==1.*)"]
+zstd = ["zstandard (>=0.18.0)"]
 
 [[package]]
 name = "humanfriendly"
@@ -599,6 +705,7 @@ version = "10.0"
 description = "Human friendly output for text interfaces using Python"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+groups = ["main"]
 files = [
     {file = "humanfriendly-10.0-py2.py3-none-any.whl", hash = "sha256:1697e1a8a8f550fd43c2865cd84542fc175a61dcb779b6fee18cf6b6ccba1477"},
     {file = "humanfriendly-10.0.tar.gz", hash = "sha256:6b0b831ce8f15f7300721aa49829fc4e83921a9a301cc7f606be6686a2288ddc"},
@@ -613,6 +720,7 @@ version = "2.6.18"
 description = "File identification library for Python"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "identify-2.6.18-py2.py3-none-any.whl", hash = "sha256:8db9d3c8ea9079db92cafb0ebf97abdc09d52e97f4dcf773a2e694048b7cd737"},
     {file = "identify-2.6.18.tar.gz", hash = "sha256:873ac56a5e3fd63e7438a7ecbc4d91aca692eb3fefa4534db2b7913f3fc352fd"},
@@ -627,6 +735,7 @@ version = "3.11"
 description = "Internationalized Domain Names in Applications (IDNA)"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "idna-3.11-py3-none-any.whl", hash = "sha256:771a87f49d9defaf64091e6e6fe9c18d4833f140bd19464795bc32d966ca37ea"},
     {file = "idna-3.11.tar.gz", hash = "sha256:795dafcc9c04ed0c1fb032c2aa73654d8e8c5023a7df64a53f39190ada629902"},
@@ -641,6 +750,7 @@ version = "5.13.2"
 description = "A Python utility / library to sort Python imports."
 optional = false
 python-versions = ">=3.8.0"
+groups = ["main"]
 files = [
     {file = "isort-5.13.2-py3-none-any.whl", hash = "sha256:8ca5e72a8d85860d5a3fa69b8745237f2939afe12dbf656afbcb47fe72d947a6"},
     {file = "isort-5.13.2.tar.gz", hash = "sha256:48fdfcb9face5d58a4f6dde2e72a1fb8dcaf8ab26f95ab49fab84c2ddefb0109"},
@@ -655,6 +765,7 @@ version = "3.1.6"
 description = "A very fast and expressive template engine."
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "jinja2-3.1.6-py3-none-any.whl", hash = "sha256:85ece4451f492d0c13c5dd7c13a64681a86afae63a5f347908daf103ce6d2f67"},
     {file = "jinja2-3.1.6.tar.gz", hash = "sha256:0137fb05990d35f1275a587e9aee6d56da821fc83491a0fb838183be43f66d6d"},
@@ -672,6 +783,7 @@ version = "4.26.0"
 description = "An implementation of JSON Schema validation for Python"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "jsonschema-4.26.0-py3-none-any.whl", hash = "sha256:d489f15263b8d200f8387e64b4c3a75f06629559fb73deb8fdfb525f2dab50ce"},
     {file = "jsonschema-4.26.0.tar.gz", hash = "sha256:0c26707e2efad8aa1bfc5b7ce170f3fccc2e4918ff85989ba9ffa9facb2be326"},
@@ -679,7 +791,7 @@ files = [
 
 [package.dependencies]
 attrs = ">=22.2.0"
-jsonschema-specifications = ">=2023.03.6"
+jsonschema-specifications = ">=2023.3.6"
 referencing = ">=0.28.4"
 rpds-py = ">=0.25.0"
 
@@ -693,6 +805,7 @@ version = "2025.9.1"
 description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "jsonschema_specifications-2025.9.1-py3-none-any.whl", hash = "sha256:98802fee3a11ee76ecaca44429fda8a41bff98b00a0f2838151b113f210cc6fe"},
     {file = "jsonschema_specifications-2025.9.1.tar.gz", hash = "sha256:b540987f239e745613c7a9176f3edb72b832a4ac465cf02712288397832b5e8d"},
@@ -707,6 +820,7 @@ version = "2.1.0"
 description = "Links recognition library with FULL unicode support."
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "linkify_it_py-2.1.0-py3-none-any.whl", hash = "sha256:0d252c1594ecba2ecedc444053db5d3a9b7ec1b0dd929c8f1d74dce89f86c05e"},
     {file = "linkify_it_py-2.1.0.tar.gz", hash = "sha256:43360231720999c10e9328dc3691160e27a718e280673d444c38d7d3aaa3b98b"},
@@ -727,6 +841,7 @@ version = "0.3.0"
 description = "Logging setup"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "logmuse-0.3.0-py3-none-any.whl", hash = "sha256:810ba709895bc2e08867d557d992e44a16895dfb4e477e61418d445e12be8a01"},
     {file = "logmuse-0.3.0.tar.gz", hash = "sha256:298c3336cbca049de2f3d6d4bc1ea4ca5d9d6154c748f34cfc86e89d31e3fc9f"},
@@ -741,6 +856,7 @@ version = "3.10.2"
 description = "Python implementation of John Gruber's Markdown."
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "markdown-3.10.2-py3-none-any.whl", hash = "sha256:e91464b71ae3ee7afd3017d9f358ef0baf158fd9a298db92f1d4761133824c36"},
     {file = "markdown-3.10.2.tar.gz", hash = "sha256:994d51325d25ad8aa7ce4ebaec003febcce822c3f8c911e3b17c52f7f589f950"},
@@ -756,6 +872,7 @@ version = "4.0.0"
 description = "Python port of markdown-it. Markdown parsing, done right!"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "markdown_it_py-4.0.0-py3-none-any.whl", hash = "sha256:87327c59b172c5011896038353a81343b6754500a08cd7a4973bb48c6d578147"},
     {file = "markdown_it_py-4.0.0.tar.gz", hash = "sha256:cb0a2b4aa34f932c007117b194e945bd74e0ec24133ceb5bac59009cda1cb9f3"},
@@ -780,6 +897,7 @@ version = "3.0.3"
 description = "Safely add untrusted strings to HTML/XML markup."
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "markupsafe-3.0.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:2f981d352f04553a7171b8e44369f2af4055f888dfb147d55e42d29e29e74559"},
     {file = "markupsafe-3.0.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:e1c1493fb6e50ab01d20a22826e57520f1284df32f2d8601fdd90b6304601419"},
@@ -878,6 +996,7 @@ version = "0.5.0"
 description = "Collection of plugins for markdown-it-py"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "mdit_py_plugins-0.5.0-py3-none-any.whl", hash = "sha256:07a08422fc1936a5d26d146759e9155ea466e842f5ab2f7d2266dd084c8dab1f"},
     {file = "mdit_py_plugins-0.5.0.tar.gz", hash = "sha256:f4918cb50119f50446560513a8e311d574ff6aaed72606ddae6d35716fe809c6"},
@@ -897,6 +1016,7 @@ version = "0.1.2"
 description = "Markdown URL utilities"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "mdurl-0.1.2-py3-none-any.whl", hash = "sha256:84008a41e51615a49fc9966191ff91509e3c40b939176e643fd50a5c2196b8f8"},
     {file = "mdurl-0.1.2.tar.gz", hash = "sha256:bb413d29f5eea38f31dd4754dd7377d4465116fb207585f97bf925588687c1ba"},
@@ -908,6 +1028,7 @@ version = "1.1.0"
 description = "Type system extensions for programs checked with the mypy type checker."
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "mypy_extensions-1.1.0-py3-none-any.whl", hash = "sha256:1be4cccdb0f2482337c4743e60421de3a356cd97508abadd57d47403e94f5505"},
     {file = "mypy_extensions-1.1.0.tar.gz", hash = "sha256:52e68efc3284861e772bbcd66823fde5ae21fd2fdb51c62a211403730b916558"},
@@ -919,6 +1040,7 @@ version = "3.5.2"
 description = "Helper tools for use with nf-core Nextflow pipelines."
 optional = false
 python-versions = "<4,>=3.10"
+groups = ["main"]
 files = [
     {file = "nf_core-3.5.2-py3-none-any.whl", hash = "sha256:3d47686f8ee9ba99f6ca34f86263ffa437582d33eb759daf363b1e874d27bbfa"},
     {file = "nf_core-3.5.2.tar.gz", hash = "sha256:2bbd2ed07750b151748fc22127d79246894b8b38b67ecd38c9a02efebb95e4c4"},
@@ -961,6 +1083,7 @@ version = "1.10.0"
 description = "Node.js virtual environment builder"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
+groups = ["main"]
 files = [
     {file = "nodeenv-1.10.0-py2.py3-none-any.whl", hash = "sha256:5bb13e3eed2923615535339b3c620e76779af4cb4c6a90deccc9e36b274d3827"},
     {file = "nodeenv-1.10.0.tar.gz", hash = "sha256:996c191ad80897d076bdfba80a41994c2b47c68e224c542b48feba42ba00f8bb"},
@@ -972,6 +1095,8 @@ version = "2.2.6"
 description = "Fundamental package for array computing in Python"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
+markers = "python_version == \"3.10\""
 files = [
     {file = "numpy-2.2.6-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:b412caa66f72040e6d268491a59f2c43bf03eb6c96dd8f0307829feb7fa2b6fb"},
     {file = "numpy-2.2.6-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:8e41fd67c52b86603a91c1a505ebaef50b3314de0213461c7a6e99c9a3beff90"},
@@ -1036,6 +1161,8 @@ version = "2.4.4"
 description = "Fundamental package for array computing in Python"
 optional = false
 python-versions = ">=3.11"
+groups = ["main"]
+markers = "python_version >= \"3.11\""
 files = [
     {file = "numpy-2.4.4-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:f983334aea213c99992053ede6168500e5f086ce74fbc4acc3f2b00f5762e9db"},
     {file = "numpy-2.4.4-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:72944b19f2324114e9dc86a159787333b77874143efcf89a5167ef83cfee8af0"},
@@ -1111,12 +1238,30 @@ files = [
     {file = "numpy-2.4.4.tar.gz", hash = "sha256:2d390634c5182175533585cc89f3608a4682ccb173cc9bb940b2881c8d6f8fa0"},
 ]
 
+[[package]]
+name = "ollama"
+version = "0.6.1"
+description = "The official Python client for Ollama."
+optional = true
+python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\""
+files = [
+    {file = "ollama-0.6.1-py3-none-any.whl", hash = "sha256:fc4c984b345735c5486faeee67d8a265214a31cbb828167782dc642ce0a2bf8c"},
+    {file = "ollama-0.6.1.tar.gz", hash = "sha256:478c67546836430034b415ed64fa890fd3d1ff91781a9d548b3325274e69d7c6"},
+]
+
+[package.dependencies]
+httpx = ">=0.27"
+pydantic = ">=2.9"
+
 [[package]]
 name = "packaging"
 version = "26.0"
 description = "Core utilities for Python packages"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "packaging-26.0-py3-none-any.whl", hash = "sha256:b36f1fef9334a5588b4166f8bcd26a14e521f2b55e6b9de3aaa80d3ff7a37529"},
     {file = "packaging-26.0.tar.gz", hash = "sha256:00243ae351a257117b6a241061796684b084ed1c516a08c48a3f7e147a9d80b4"},
@@ -1128,6 +1273,7 @@ version = "2.3.3"
 description = "Powerful data structures for data analysis, time series, and statistics"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "pandas-2.3.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:376c6446ae31770764215a6c937f72d917f214b43560603cd60da6408f183b6c"},
     {file = "pandas-2.3.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:e19d192383eab2f4ceb30b412b22ea30690c9e618f78870357ae1d682912015a"},
@@ -1227,6 +1373,7 @@ version = "1.0.4"
 description = "Utility library for gitignore style pattern matching of file paths."
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "pathspec-1.0.4-py3-none-any.whl", hash = "sha256:fb6ae2fd4e7c921a165808a552060e722767cfa526f99ca5156ed2ce45a5c723"},
     {file = "pathspec-1.0.4.tar.gz", hash = "sha256:0210e2ae8a21a9137c0d470578cb0e595af87edaa6ebf12ff176f14a02e0e645"},
@@ -1244,6 +1391,7 @@ version = "1.1.5"
 description = "Pretty side-by-side diff"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "pdiff-1.1.5-py3-none-any.whl", hash = "sha256:9dc2327b96548c6fefb94d5bc4e689eff5460f36debabb829bb8f68ead98bcf5"},
     {file = "pdiff-1.1.5.tar.gz", hash = "sha256:65c3a1ab67060a337f03c0cacbbcd24bfbf1bf17961ca1b3875f47662745a7d5"},
@@ -1258,6 +1406,7 @@ version = "0.5.1"
 description = "PEPhub command line interface."
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "pephubclient-0.5.1-py3-none-any.whl", hash = "sha256:9b5a4ab4ae4fb8e4f3fa80681a274f758f7c0678e1caa41aed4067a495ff0653"},
     {file = "pephubclient-0.5.1.tar.gz", hash = "sha256:41a8b7af90477c027f0f9205383178381a2bd042d2da18d9e047be81d9597b7a"},
@@ -1278,6 +1427,7 @@ version = "0.40.8"
 description = "A python-based project metadata manager for portable encapsulated projects"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "peppy-0.40.8-py3-none-any.whl", hash = "sha256:9d146f8db5a7867de754a63b7012ead1b884c0dddb2609e878ee5548701cd59e"},
     {file = "peppy-0.40.8.tar.gz", hash = "sha256:2dcfe8e348130e94570340e2dfc96ce672d8af78c8ae97e21f2b0afe22ce2a8a"},
@@ -1297,6 +1447,7 @@ version = "12.2.0"
 description = "Python Imaging Library (fork)"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "pillow-12.2.0-cp310-cp310-macosx_10_10_x86_64.whl", hash = "sha256:a4e8f36e677d3336f35089648c8955c51c6d386a13cf6ee9c189c5f5bd713a9f"},
     {file = "pillow-12.2.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:2e589959f10d9824d39b350472b92f0ce3b443c0a3442ebf41c40cb8361c5b97"},
@@ -1405,6 +1556,7 @@ version = "0.15.1"
 description = "A lightweight python toolkit for gluing together restartable, robust command line pipelines"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "piper-0.15.1-py3-none-any.whl", hash = "sha256:1aefcc17abfd98017513a3492f3a40d2f1c22a88c99d89bb009b4926e94ff327"},
     {file = "piper-0.15.1.tar.gz", hash = "sha256:0fd2d4d4483ddac9c6fefd005b95ea528a7159c9e7f72a085bb4d36daf6fff9d"},
@@ -1428,6 +1580,7 @@ version = "0.13.1"
 description = "A pipeline results reporter"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "pipestat-0.13.1-py3-none-any.whl", hash = "sha256:b51b97d1a68b1f0f553a785fc66574ddbe162e24b57e13c36190f7fe4b5c6153"},
     {file = "pipestat-0.13.1.tar.gz", hash = "sha256:87cf69404511e434e8e9a20abdfd9c8123ad6d2f7818a182a29db772a8d78d47"},
@@ -1453,6 +1606,7 @@ version = "4.9.6"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "platformdirs-4.9.6-py3-none-any.whl", hash = "sha256:e61adb1d5e5cb3441b4b7710bea7e4c12250ca49439228cc1021c00dcfac0917"},
     {file = "platformdirs-4.9.6.tar.gz", hash = "sha256:3bfa75b0ad0db84096ae777218481852c0ebc6c727b3168c1b9e0118e458cf0a"},
@@ -1464,6 +1618,7 @@ version = "4.5.1"
 description = "A framework for managing and maintaining multi-language pre-commit hooks."
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "pre_commit-4.5.1-py2.py3-none-any.whl", hash = "sha256:3b3afd891e97337708c1674210f8eba659b52a38ea5f822ff142d10786221f77"},
     {file = "pre_commit-4.5.1.tar.gz", hash = "sha256:eb545fcff725875197837263e977ea257a402056661f09dae08e4b149b030a61"},
@@ -1482,6 +1637,7 @@ version = "3.0.52"
 description = "Library for building powerful interactive command lines in Python"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "prompt_toolkit-3.0.52-py3-none-any.whl", hash = "sha256:9aac639a3bbd33284347de5ad8d68ecc044b91a762dc39b7c21095fcd6a19955"},
     {file = "prompt_toolkit-3.0.52.tar.gz", hash = "sha256:28cde192929c8e7321de85de1ddbe736f1375148b02f2e17edd840042b1be855"},
@@ -1496,6 +1652,7 @@ version = "7.2.2"
 description = "Cross-platform lib for process and system monitoring."
 optional = false
 python-versions = ">=3.6"
+groups = ["main"]
 files = [
     {file = "psutil-7.2.2-cp313-cp313t-macosx_10_13_x86_64.whl", hash = "sha256:2edccc433cbfa046b980b0df0171cd25bcaeb3a68fe9022db0979e7aa74a826b"},
     {file = "psutil-7.2.2-cp313-cp313t-macosx_11_0_arm64.whl", hash = "sha256:e78c8603dcd9a04c7364f1a3e670cea95d51ee865e4efb3556a3a63adef958ea"},
@@ -1521,8 +1678,8 @@ files = [
 ]
 
 [package.extras]
-dev = ["abi3audit", "black", "check-manifest", "colorama", "coverage", "packaging", "psleak", "pylint", "pyperf", "pypinfo", "pyreadline3", "pytest", "pytest-cov", "pytest-instafail", "pytest-xdist", "pywin32", "requests", "rstcheck", "ruff", "setuptools", "sphinx", "sphinx_rtd_theme", "toml-sort", "twine", "validate-pyproject[all]", "virtualenv", "vulture", "wheel", "wheel", "wmi"]
-test = ["psleak", "pytest", "pytest-instafail", "pytest-xdist", "pywin32", "setuptools", "wheel", "wmi"]
+dev = ["abi3audit", "black", "check-manifest", "colorama ; os_name == \"nt\"", "coverage", "packaging", "psleak", "pylint", "pyperf", "pypinfo", "pyreadline3 ; os_name == \"nt\"", "pytest", "pytest-cov", "pytest-instafail", "pytest-xdist", "pywin32 ; os_name == \"nt\" and implementation_name != \"pypy\"", "requests", "rstcheck", "ruff", "setuptools", "sphinx", "sphinx_rtd_theme", "toml-sort", "twine", "validate-pyproject[all]", "virtualenv", "vulture", "wheel", "wheel ; os_name == \"nt\" and implementation_name != \"pypy\"", "wmi ; os_name == \"nt\" and implementation_name != \"pypy\""]
+test = ["psleak", "pytest", "pytest-instafail", "pytest-xdist", "pywin32 ; os_name == \"nt\" and implementation_name != \"pypy\"", "setuptools", "wheel ; os_name == \"nt\" and implementation_name != \"pypy\"", "wmi ; os_name == \"nt\" and implementation_name != \"pypy\""]
 
 [[package]]
 name = "pycparser"
@@ -1530,6 +1687,8 @@ version = "3.0"
 description = "C parser in Python"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
+markers = "platform_python_implementation != \"PyPy\" and implementation_name != \"PyPy\""
 files = [
     {file = "pycparser-3.0-py3-none-any.whl", hash = "sha256:b727414169a36b7d524c1c3e31839a521725078d7b2ff038656844266160a992"},
     {file = "pycparser-3.0.tar.gz", hash = "sha256:600f49d217304a5902ac3c37e1281c9fe94e4d0489de643a9504c5cdfdfc6b29"},
@@ -1541,6 +1700,7 @@ version = "2.13.0"
 description = "Data validation using Python type hints"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "pydantic-2.13.0-py3-none-any.whl", hash = "sha256:ab0078b90da5f3e2fd2e71e3d9b457ddcb35d0350854fbda93b451e28d56baaf"},
     {file = "pydantic-2.13.0.tar.gz", hash = "sha256:b89b575b6e670ebf6e7448c01b41b244f471edd276cd0b6fe02e7e7aca320070"},
@@ -1554,7 +1714,7 @@ typing-inspection = ">=0.4.2"
 
 [package.extras]
 email = ["email-validator (>=2.0.0)"]
-timezone = ["tzdata"]
+timezone = ["tzdata ; python_version >= \"3.9\" and platform_system == \"Windows\""]
 
 [[package]]
 name = "pydantic-core"
@@ -1562,6 +1722,7 @@ version = "2.46.0"
 description = "Core functionality for Pydantic validation and serialization"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "pydantic_core-2.46.0-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:2d449eae37d6b066d8a8be0e3a7d7041712d6e9152869e7d03c203795aae44ed"},
     {file = "pydantic_core-2.46.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:4f7bfc1ffee4ddc03c2db472c7607a238dbbf76f7f64104fc6a623d47fb8e310"},
@@ -1694,6 +1855,7 @@ version = "0.9.0.4"
 description = "pyfaidx: efficient pythonic random access to fasta subsequences"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "pyfaidx-0.9.0.4-py3-none-any.whl", hash = "sha256:18b223b7ba8c66b988a8ce00011500961cb2aeb7fa97d05a293cf472acdd0009"},
     {file = "pyfaidx-0.9.0.4.tar.gz", hash = "sha256:801bdd208b12bff6f4fb2da10a16834158dbb1c6f146e4015c9ff45e509acd65"},
@@ -1708,6 +1870,7 @@ version = "3.4.0"
 description = "passive checker of Python programs"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "pyflakes-3.4.0-py2.py3-none-any.whl", hash = "sha256:f742a7dbd0d9cb9ea41e9a24a918996e8170c799fa528688d40dd582c8265f4f"},
     {file = "pyflakes-3.4.0.tar.gz", hash = "sha256:b24f96fafb7d2ab0ec5075b7350b3d2d2218eab42003821c06344973d3ea2f58"},
@@ -1719,6 +1882,7 @@ version = "2.9.0"
 description = "Use the full Github API v3"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "pygithub-2.9.0-py3-none-any.whl", hash = "sha256:5e2b260ce327bffce9b00f447b65953ef7078ffe93e5a5425624a3075483927c"},
     {file = "pygithub-2.9.0.tar.gz", hash = "sha256:a26abda1222febba31238682634cad11d8b966137ed6cc3c5e445b29a11cb0a4"},
@@ -1737,6 +1901,7 @@ version = "2.20.0"
 description = "Pygments is a syntax highlighting package written in Python."
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "pygments-2.20.0-py3-none-any.whl", hash = "sha256:81a9e26dd42fd28a23a2d169d86d7ac03b46e2f8b59ed4698fb4785f946d0176"},
     {file = "pygments-2.20.0.tar.gz", hash = "sha256:6757cd03768053ff99f3039c1a36d6c0aa0b263438fcab17520b30a303a82b5f"},
@@ -1751,6 +1916,7 @@ version = "2.12.1"
 description = "JSON Web Token implementation in Python"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "pyjwt-2.12.1-py3-none-any.whl", hash = "sha256:28ca37c070cad8ba8cd9790cd940535d40274d22f80ab87f3ac6a713e6e8454c"},
     {file = "pyjwt-2.12.1.tar.gz", hash = "sha256:c74a7a2adf861c04d002db713dd85f84beb242228e671280bf709d765b03672b"},
@@ -1772,6 +1938,7 @@ version = "1.6.2"
 description = "Python binding to the Networking and Cryptography (NaCl) library"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "pynacl-1.6.2-cp314-cp314t-macosx_10_10_universal2.whl", hash = "sha256:622d7b07cc5c02c666795792931b50c91f3ce3c2649762efb1ef0d5684c81594"},
     {file = "pynacl-1.6.2-cp314-cp314t-manylinux2014_aarch64.manylinux_2_17_aarch64.whl", hash = "sha256:d071c6a9a4c94d79eb665db4ce5cedc537faf74f2355e4d502591d850d3913c0"},
@@ -1813,6 +1980,8 @@ version = "3.5.4"
 description = "A python implementation of GNU readline."
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "sys_platform == \"win32\""
 files = [
     {file = "pyreadline3-3.5.4-py3-none-any.whl", hash = "sha256:eaf8e6cc3c49bcccf145fc6067ba8643d1df34d604a1ec0eccbf7a18e6d3fae6"},
     {file = "pyreadline3-3.5.4.tar.gz", hash = "sha256:8d57d53039a1c75adba8e50dd3d992b28143480816187ea5efbd5c78e6c885b7"},
@@ -1827,6 +1996,7 @@ version = "2.9.0.post0"
 description = "Extensions to the standard Python datetime module"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
+groups = ["main"]
 files = [
     {file = "python-dateutil-2.9.0.post0.tar.gz", hash = "sha256:37dd54208da7e1cd875388217d5e00ebd4179249f90fb72437e91a35459a0ad3"},
     {file = "python_dateutil-2.9.0.post0-py2.py3-none-any.whl", hash = "sha256:a8b2bc7bffae282281c8140a97d3aa9c14da0b136dfe83f850eea9a5f7470427"},
@@ -1841,6 +2011,7 @@ version = "1.2.2"
 description = "Python interpreter discovery"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "python_discovery-1.2.2-py3-none-any.whl", hash = "sha256:e1ae95d9af875e78f15e19aed0c6137ab1bb49c200f21f5061786490c9585c7a"},
     {file = "python_discovery-1.2.2.tar.gz", hash = "sha256:876e9c57139eb757cb5878cbdd9ae5379e5d96266c99ef731119e04fffe533bb"},
@@ -1860,6 +2031,7 @@ version = "0.4.1"
 description = "A Fast, spec compliant Python 3.14+ tokenizer that runs on older Pythons."
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "pytokens-0.4.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:2a44ed93ea23415c54f3face3b65ef2b844d96aeb3455b8a69b3df6beab6acc5"},
     {file = "pytokens-0.4.1-cp310-cp310-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:add8bf86b71a5d9fb5b89f023a80b791e04fba57960aa790cc6125f7f1d39dfe"},
@@ -1914,6 +2086,7 @@ version = "2026.1.post1"
 description = "World timezone definitions, modern and historical"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "pytz-2026.1.post1-py2.py3-none-any.whl", hash = "sha256:f2fd16142fda348286a75e1a524be810bb05d444e5a081f37f7affc635035f7a"},
     {file = "pytz-2026.1.post1.tar.gz", hash = "sha256:3378dde6a0c3d26719182142c56e60c7f9af7e968076f31aae569d72a0358ee1"},
@@ -1925,6 +2098,7 @@ version = "6.0.3"
 description = "YAML parser and emitter for Python"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "PyYAML-6.0.3-cp38-cp38-macosx_10_13_x86_64.whl", hash = "sha256:c2514fceb77bc5e7a2f7adfaa1feb2fb311607c9cb518dbc378688ec73d8292f"},
     {file = "PyYAML-6.0.3-cp38-cp38-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:9c57bb8c96f6d1808c030b1687b9b5fb476abaa47f0db9c0101f5e9f394e97f4"},
@@ -2007,6 +2181,7 @@ version = "2.1.1"
 description = "Python library to build pretty command line user prompts ⭐️"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "questionary-2.1.1-py3-none-any.whl", hash = "sha256:a51af13f345f1cdea62347589fbb6df3b290306ab8930713bfae4d475a7d4a59"},
     {file = "questionary-2.1.1.tar.gz", hash = "sha256:3d7e980292bb0107abaa79c68dd3eee3c561b83a0f89ae482860b181c8bd412d"},
@@ -2021,6 +2196,7 @@ version = "0.37.0"
 description = "JSON Referencing + Python"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "referencing-0.37.0-py3-none-any.whl", hash = "sha256:381329a9f99628c9069361716891d34ad94af76e461dcb0335825aecc7692231"},
     {file = "referencing-0.37.0.tar.gz", hash = "sha256:44aefc3142c5b842538163acb373e24cce6632bd54bdb01b21ad5863489f50d8"},
@@ -2037,6 +2213,7 @@ version = "0.13.1"
 description = "A standardized configuration object for reference genome assemblies"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "refgenconf-0.13.1-py3-none-any.whl", hash = "sha256:1084a70720a872535c749616634e33e717784f9e140bfac5eed546539d7434e3"},
     {file = "refgenconf-0.13.1.tar.gz", hash = "sha256:4653d5ada163a2716ef61f834207c55761d0ad681c8204a1a4873ef3708eb027"},
@@ -2060,6 +2237,7 @@ version = "0.13.0"
 description = "Refgenie creates a standardized folder structure for reference genome files and indexes"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "refgenie-0.13.0-py3-none-any.whl", hash = "sha256:107e2b0fafb3e51158be134d6904f27fd288d7901eb93a44eb76b9e6232a20e2"},
     {file = "refgenie-0.13.0.tar.gz", hash = "sha256:dc1a132b492feb8950f59737a87ea9626c8d400f728041ca3dd93ad860504404"},
@@ -2084,6 +2262,7 @@ version = "0.1.2"
 description = "Generate RO-Crates from workflow repositories"
 optional = false
 python-versions = ">=3.6, <4"
+groups = ["main"]
 files = [
     {file = "repo2rocrate-0.1.2-py3-none-any.whl", hash = "sha256:aae2d7923eef11896aabcf676f74460dfff35060c71996778dc62fd3af199d4d"},
     {file = "repo2rocrate-0.1.2.tar.gz", hash = "sha256:ae120c35180f852a18dee8c6ea114dc0c65abaa111b26a3da87d4f211dd7eedc"},
@@ -2100,6 +2279,7 @@ version = "2.33.1"
 description = "Python HTTP for Humans."
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "requests-2.33.1-py3-none-any.whl", hash = "sha256:4e6d1ef462f3626a1f0a0a9c42dd93c63bad33f9f1c1937509b8c5c8718ab56a"},
     {file = "requests-2.33.1.tar.gz", hash = "sha256:18817f8c57c6263968bc123d237e3b8b08ac046f5456bd1e307ee8f4250d3517"},
@@ -2121,6 +2301,7 @@ version = "1.3.1"
 description = "A persistent cache for python requests"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "requests_cache-1.3.1-py3-none-any.whl", hash = "sha256:43a67448c3b2964c631ac7027b84607f2f63438e28104b68ad2211f32d9f606c"},
     {file = "requests_cache-1.3.1.tar.gz", hash = "sha256:784e9d07f72db4fe234830a065230c59eb446489528f271ba288c640897e47c4"},
@@ -2148,6 +2329,7 @@ version = "15.0.0"
 description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
 optional = false
 python-versions = ">=3.9.0"
+groups = ["main"]
 files = [
     {file = "rich-15.0.0-py3-none-any.whl", hash = "sha256:33bd4ef74232fb73fe9279a257718407f169c09b78a87ad3d296f548e27de0bb"},
     {file = "rich-15.0.0.tar.gz", hash = "sha256:edd07a4824c6b40189fb7ac9bc4c52536e9780fbbfbddf6f1e2502c31b068c36"},
@@ -2166,6 +2348,7 @@ version = "1.9.7"
 description = "Format click help output nicely with rich"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "rich_click-1.9.7-py3-none-any.whl", hash = "sha256:2f99120fca78f536e07b114d3b60333bc4bb2a0969053b1250869bcdc1b5351b"},
     {file = "rich_click-1.9.7.tar.gz", hash = "sha256:022997c1e30731995bdbc8ec2f82819340d42543237f033a003c7b1f843fc5dc"},
@@ -2179,7 +2362,7 @@ typing-extensions = {version = ">=4", markers = "python_version < \"3.11\""}
 
 [package.extras]
 dev = ["inline-snapshot (>=0.24)", "jsonschema (>=4)", "mypy (>=1.14.1)", "nodeenv (>=1.9.1)", "packaging (>=25)", "pre-commit (>=3.5)", "pytest (>=8.3.5)", "pytest-cov (>=5)", "rich-codex (>=1.2.11)", "ruff (>=0.12.4)", "typer (>=0.15)", "types-setuptools (>=75.8.0.20250110)"]
-docs = ["markdown-include (>=0.8.1)", "mike (>=2.1.3)", "mkdocs-github-admonitions-plugin (>=0.1.1)", "mkdocs-glightbox (>=0.4)", "mkdocs-include-markdown-plugin (>=7.1.7)", "mkdocs-material-extensions (>=1.3.1)", "mkdocs-material[imaging] (>=9.5.18,<9.6.0)", "mkdocs-redirects (>=1.2.2)", "mkdocs-rss-plugin (>=1.15)", "mkdocs[docs] (>=1.6.1)", "mkdocstrings[python] (>=0.26.1)", "rich-codex (>=1.2.11)", "typer (>=0.15)"]
+docs = ["markdown-include (>=0.8.1)", "mike (>=2.1.3)", "mkdocs-github-admonitions-plugin (>=0.1.1)", "mkdocs-glightbox (>=0.4)", "mkdocs-include-markdown-plugin (>=7.1.7) ; python_version >= \"3.9\"", "mkdocs-material-extensions (>=1.3.1)", "mkdocs-material[imaging] (>=9.5.18,<9.6.0)", "mkdocs-redirects (>=1.2.2)", "mkdocs-rss-plugin (>=1.15)", "mkdocs[docs] (>=1.6.1)", "mkdocstrings[python] (>=0.26.1)", "rich-codex (>=1.2.11)", "typer (>=0.15)"]
 
 [[package]]
 name = "rocrate"
@@ -2187,6 +2370,7 @@ version = "0.15.0"
 description = "RO-Crate metadata generator/parser"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "rocrate-0.15.0-py3-none-any.whl", hash = "sha256:faa7b8fe41f84a7a8085cf4e31a973565a391cc25a850e847cdab5c2c2e52cee"},
     {file = "rocrate-0.15.0.tar.gz", hash = "sha256:20f0b518dcb1efbf9d25833ec5c24586dee4c39201ed1024e2277a3cd171df3e"},
@@ -2208,6 +2392,7 @@ version = "0.30.0"
 description = "Python bindings to Rust's persistent data structures (rpds)"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "rpds_py-0.30.0-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:679ae98e00c0e8d68a7fda324e16b90fd5260945b45d3b824c892cec9eea3288"},
     {file = "rpds_py-0.30.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:4cc2206b76b4f576934f0ed374b10d7ca5f457858b157ca52064bdfc26b9fc00"},
@@ -2332,6 +2517,7 @@ version = "0.19.1"
 description = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "ruamel_yaml-0.19.1-py3-none-any.whl", hash = "sha256:27592957fedf6e0b62f281e96effd28043345e0e66001f97683aa9a40c667c93"},
     {file = "ruamel_yaml-0.19.1.tar.gz", hash = "sha256:53eb66cd27849eff968ebf8f0bf61f46cdac2da1d1f3576dd4ccee9b25c31993"},
@@ -2340,8 +2526,8 @@ files = [
 [package.extras]
 docs = ["mercurial (>5.7)", "ryd"]
 jinja2 = ["ruamel.yaml.jinja2 (>=0.2)"]
-libyaml = ["ruamel.yaml.clibz (>=0.3.7)"]
-oldlibyaml = ["ruamel.yaml.clib"]
+libyaml = ["ruamel.yaml.clibz (>=0.3.7) ; platform_python_implementation == \"CPython\""]
+oldlibyaml = ["ruamel.yaml.clib ; platform_python_implementation == \"CPython\""]
 
 [[package]]
 name = "setuptools"
@@ -2349,19 +2535,20 @@ version = "82.0.1"
 description = "Most extensible Python build backend with support for C/C++ extension modules"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "setuptools-82.0.1-py3-none-any.whl", hash = "sha256:a59e362652f08dcd477c78bb6e7bd9d80a7995bc73ce773050228a348ce2e5bb"},
     {file = "setuptools-82.0.1.tar.gz", hash = "sha256:7d872682c5d01cfde07da7bccc7b65469d3dca203318515ada1de5eda35efbf9"},
 ]
 
 [package.extras]
-check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)", "ruff (>=0.13.0)"]
-core = ["importlib_metadata (>=6)", "jaraco.functools (>=4)", "jaraco.text (>=3.7)", "more_itertools", "more_itertools (>=8.8)", "packaging (>=24.2)", "tomli (>=2.0.1)", "wheel (>=0.43.0)"]
+check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1) ; sys_platform != \"cygwin\"", "ruff (>=0.13.0) ; sys_platform != \"cygwin\""]
+core = ["importlib_metadata (>=6) ; python_version < \"3.10\"", "jaraco.functools (>=4)", "jaraco.text (>=3.7)", "more_itertools", "more_itertools (>=8.8)", "packaging (>=24.2)", "tomli (>=2.0.1) ; python_version < \"3.11\"", "wheel (>=0.43.0)"]
 cover = ["pytest-cov"]
 doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "pyproject-hooks (!=1.1)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier", "towncrier (<24.7)"]
 enabler = ["pytest-enabler (>=2.2)"]
-test = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "ini2toml[lite] (>=0.14)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.7.2)", "jaraco.test (>=5.5)", "packaging (>=24.2)", "pip (>=19.1)", "pyproject-hooks (!=1.1)", "pytest (>=6,!=8.1.*)", "pytest-home (>=0.5)", "pytest-perf", "pytest-subprocess", "pytest-timeout", "pytest-xdist (>=3)", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel (>=0.44.0)"]
-type = ["importlib_metadata (>=7.0.2)", "jaraco.develop (>=7.21)", "mypy (==1.18.*)", "pytest-mypy"]
+test = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "ini2toml[lite] (>=0.14)", "jaraco.develop (>=7.21) ; python_version >= \"3.9\" and sys_platform != \"cygwin\"", "jaraco.envs (>=2.2)", "jaraco.path (>=3.7.2)", "jaraco.test (>=5.5)", "packaging (>=24.2)", "pip (>=19.1)", "pyproject-hooks (!=1.1)", "pytest (>=6,!=8.1.*)", "pytest-home (>=0.5)", "pytest-perf ; sys_platform != \"cygwin\"", "pytest-subprocess", "pytest-timeout", "pytest-xdist (>=3)", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel (>=0.44.0)"]
+type = ["importlib_metadata (>=7.0.2) ; python_version < \"3.10\"", "jaraco.develop (>=7.21) ; sys_platform != \"cygwin\"", "mypy (==1.18.*)", "pytest-mypy"]
 
 [[package]]
 name = "shellingham"
@@ -2369,6 +2556,7 @@ version = "1.5.4"
 description = "Tool to Detect Surrounding Shell"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "shellingham-1.5.4-py2.py3-none-any.whl", hash = "sha256:7ecfff8f2fd72616f7481040475a65b2bf8af90a56c89140852d1120324e8686"},
     {file = "shellingham-1.5.4.tar.gz", hash = "sha256:8dbca0739d487e5bd35ab3ca4b36e11c4078f3a234bfce294b0a0291363404de"},
@@ -2380,6 +2568,7 @@ version = "1.17.0"
 description = "Python 2 and 3 compatibility utilities"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
+groups = ["main"]
 files = [
     {file = "six-1.17.0-py2.py3-none-any.whl", hash = "sha256:4721f391ed90541fddacab5acf947aa0d3dc7d27b2e1e8eda2be8970586c3274"},
     {file = "six-1.17.0.tar.gz", hash = "sha256:ff70335d468e7eb6ec65b95b99d3a2836546063f63acc5171de367e834932a81"},
@@ -2391,6 +2580,7 @@ version = "5.0.3"
 description = "A pure Python implementation of a sliding window memory map manager"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "smmap-5.0.3-py3-none-any.whl", hash = "sha256:c106e05d5a61449cf6ba9a1e650227ecfb141590d2a98412103ff35d89fc7b2f"},
     {file = "smmap-5.0.3.tar.gz", hash = "sha256:4d9debb8b99007ae47165abc08670bd74cb74b5227dda7f643eccc4e9eb5642c"},
@@ -2402,6 +2592,7 @@ version = "0.10.0"
 description = "Pretty-print tabular data"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "tabulate-0.10.0-py3-none-any.whl", hash = "sha256:f0b0622e567335c8fabaaa659f1b33bcb6ddfe2e496071b743aa113f8774f2d3"},
     {file = "tabulate-0.10.0.tar.gz", hash = "sha256:e2cfde8f79420f6deeffdeda9aaec3b6bc5abce947655d17ac662b126e48a60d"},
@@ -2416,6 +2607,7 @@ version = "7.4.0"
 description = "Modern Text User Interface framework"
 optional = false
 python-versions = "<4.0,>=3.9"
+groups = ["main"]
 files = [
     {file = "textual-7.4.0-py3-none-any.whl", hash = "sha256:41a066cae649654d4ecfe53b8316f5737c0042d1693ce50690b769a7840780ac"},
     {file = "textual-7.4.0.tar.gz", hash = "sha256:1a9598e485492f9a8f033c7ec5e59528df3ab0742fda925681acf78b0fb210de"},
@@ -2430,7 +2622,7 @@ rich = ">=14.2.0"
 typing-extensions = ">=4.4.0,<5.0.0"
 
 [package.extras]
-syntax = ["tree-sitter (>=0.25.0)", "tree-sitter-bash (>=0.23.0)", "tree-sitter-css (>=0.23.0)", "tree-sitter-go (>=0.23.0)", "tree-sitter-html (>=0.23.0)", "tree-sitter-java (>=0.23.0)", "tree-sitter-javascript (>=0.23.0)", "tree-sitter-json (>=0.24.0)", "tree-sitter-markdown (>=0.3.0)", "tree-sitter-python (>=0.23.0)", "tree-sitter-regex (>=0.24.0)", "tree-sitter-rust (>=0.23.0)", "tree-sitter-sql (>=0.3.11)", "tree-sitter-toml (>=0.6.0)", "tree-sitter-xml (>=0.7.0)", "tree-sitter-yaml (>=0.6.0)"]
+syntax = ["tree-sitter (>=0.25.0) ; python_version >= \"3.10\"", "tree-sitter-bash (>=0.23.0) ; python_version >= \"3.10\"", "tree-sitter-css (>=0.23.0) ; python_version >= \"3.10\"", "tree-sitter-go (>=0.23.0) ; python_version >= \"3.10\"", "tree-sitter-html (>=0.23.0) ; python_version >= \"3.10\"", "tree-sitter-java (>=0.23.0) ; python_version >= \"3.10\"", "tree-sitter-javascript (>=0.23.0) ; python_version >= \"3.10\"", "tree-sitter-json (>=0.24.0) ; python_version >= \"3.10\"", "tree-sitter-markdown (>=0.3.0) ; python_version >= \"3.10\"", "tree-sitter-python (>=0.23.0) ; python_version >= \"3.10\"", "tree-sitter-regex (>=0.24.0) ; python_version >= \"3.10\"", "tree-sitter-rust (>=0.23.0) ; python_version >= \"3.10\"", "tree-sitter-sql (>=0.3.11) ; python_version >= \"3.10\"", "tree-sitter-toml (>=0.6.0) ; python_version >= \"3.10\"", "tree-sitter-xml (>=0.7.0) ; python_version >= \"3.10\"", "tree-sitter-yaml (>=0.6.0) ; python_version >= \"3.10\""]
 
 [[package]]
 name = "tomli"
@@ -2438,6 +2630,8 @@ version = "2.4.1"
 description = "A lil' TOML parser"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "python_version == \"3.10\""
 files = [
     {file = "tomli-2.4.1-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:f8f0fc26ec2cc2b965b7a3b87cd19c5c6b8c5e5f436b984e85f486d652285c30"},
     {file = "tomli-2.4.1-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:4ab97e64ccda8756376892c53a72bd1f964e519c77236368527f758fbc36a53a"},
@@ -2494,6 +2688,7 @@ version = "4.67.3"
 description = "Fast, Extensible Progress Meter"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "tqdm-4.67.3-py3-none-any.whl", hash = "sha256:ee1e4c0e59148062281c49d80b25b67771a127c85fc9676d3be5f243206826bf"},
     {file = "tqdm-4.67.3.tar.gz", hash = "sha256:7d825f03f89244ef73f1d4ce193cb1774a8179fd96f31d7e1dcde62092b960bb"},
@@ -2515,6 +2710,7 @@ version = "0.6.0"
 description = "Automatically generate a Textual TUI for your Click CLI"
 optional = false
 python-versions = "<4.0.0,>=3.8.1"
+groups = ["main"]
 files = [
     {file = "trogon-0.6.0-py3-none-any.whl", hash = "sha256:fb5b6c25acd7a0eaba8d2cd32a57f1d80c26413cea737dad7a4eebcda56060e0"},
     {file = "trogon-0.6.0.tar.gz", hash = "sha256:fd1abfeb7b15d79d6e6cfc9e724aad2a2728812e4713a744d975f133e7ec73a4"},
@@ -2533,6 +2729,7 @@ version = "0.24.1"
 description = "Typer, build great CLIs. Easy to code. Based on Python type hints."
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "typer-0.24.1-py3-none-any.whl", hash = "sha256:112c1f0ce578bfb4cab9ffdabc68f031416ebcc216536611ba21f04e9aa84c9e"},
     {file = "typer-0.24.1.tar.gz", hash = "sha256:e39b4732d65fbdcde189ae76cf7cd48aeae72919dea1fdfc16593be016256b45"},
@@ -2550,6 +2747,7 @@ version = "4.15.0"
 description = "Backported and Experimental Type Hints for Python 3.9+"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "typing_extensions-4.15.0-py3-none-any.whl", hash = "sha256:f0fa19c6845758ab08074a0cfa8b7aecb71c999ca73d62883bc25cc018c4e548"},
     {file = "typing_extensions-4.15.0.tar.gz", hash = "sha256:0cea48d173cc12fa28ecabc3b837ea3cf6f38c6d1136f85cbaaf598984861466"},
@@ -2561,6 +2759,7 @@ version = "0.4.2"
 description = "Runtime typing introspection tools"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "typing_inspection-0.4.2-py3-none-any.whl", hash = "sha256:4ed1cacbdc298c220f1bd249ed5287caa16f34d44ef4e9c3d0cbad5b521545e7"},
     {file = "typing_inspection-0.4.2.tar.gz", hash = "sha256:ba561c48a67c5958007083d386c3295464928b01faa735ab8547c5692e87f464"},
@@ -2575,6 +2774,7 @@ version = "2026.1"
 description = "Provider of IANA time zone data"
 optional = false
 python-versions = ">=2"
+groups = ["main"]
 files = [
     {file = "tzdata-2026.1-py2.py3-none-any.whl", hash = "sha256:4b1d2be7ac37ceafd7327b961aa3a54e467efbdb563a23655fbfe0d39cfc42a9"},
     {file = "tzdata-2026.1.tar.gz", hash = "sha256:67658a1903c75917309e753fdc349ac0efd8c27db7a0cb406a25be4840f87f98"},
@@ -2586,6 +2786,7 @@ version = "0.9.3"
 description = "Various utility functions"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "ubiquerg-0.9.3-py3-none-any.whl", hash = "sha256:ffe7589df85cf3ba7379b23e6d6060557b5dcd4eab3f70befcf90b6bf812f08a"},
     {file = "ubiquerg-0.9.3.tar.gz", hash = "sha256:3b4094377061fd5425cfc9f10865437f2c01d90a0d933d08682d789dc3e4ece8"},
@@ -2600,6 +2801,7 @@ version = "2.0.0"
 description = "Micro subset of unicode data files for linkify-it-py projects."
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "uc_micro_py-2.0.0-py3-none-any.whl", hash = "sha256:3603a3859af53e5a39bc7677713c78ea6589ff188d70f4fee165db88e22b242c"},
     {file = "uc_micro_py-2.0.0.tar.gz", hash = "sha256:c53691e495c8db60e16ffc4861a35469b0ba0821fe409a8a7a0a71864d33a811"},
@@ -2614,6 +2816,7 @@ version = "2.2.1"
 description = "URL normalization for Python"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "url_normalize-2.2.1-py3-none-any.whl", hash = "sha256:3deb687587dc91f7b25c9ae5162ffc0f057ae85d22b1e15cf5698311247f567b"},
     {file = "url_normalize-2.2.1.tar.gz", hash = "sha256:74a540a3b6eba1d95bdc610c24f2c0141639f3ba903501e61a52a8730247ff37"},
@@ -2631,16 +2834,17 @@ version = "2.6.3"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "urllib3-2.6.3-py3-none-any.whl", hash = "sha256:bf272323e553dfb2e87d9bfd225ca7b0f467b919d7bbd355436d3fd37cb0acd4"},
     {file = "urllib3-2.6.3.tar.gz", hash = "sha256:1b62b6884944a57dbe321509ab94fd4d3b307075e0c2eae991ac71ee15ad38ed"},
 ]
 
 [package.extras]
-brotli = ["brotli (>=1.2.0)", "brotlicffi (>=1.2.0.0)"]
+brotli = ["brotli (>=1.2.0) ; platform_python_implementation == \"CPython\"", "brotlicffi (>=1.2.0.0) ; platform_python_implementation != \"CPython\""]
 h2 = ["h2 (>=4,<5)"]
 socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"]
-zstd = ["backports-zstd (>=1.0.0)"]
+zstd = ["backports-zstd (>=1.0.0) ; python_version < \"3.14\""]
 
 [[package]]
 name = "virtualenv"
@@ -2648,6 +2852,7 @@ version = "21.2.1"
 description = "Virtual Python Environment builder"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "virtualenv-21.2.1-py3-none-any.whl", hash = "sha256:bd16b49c53562b28cf1a3ad2f36edb805ad71301dee70ddc449e5c88a9f919a2"},
     {file = "virtualenv-21.2.1.tar.gz", hash = "sha256:b66ffe81301766c0d5e2208fc3576652c59d44e7b731fc5f5ed701c9b537fa78"},
@@ -2666,6 +2871,7 @@ version = "0.6.0"
 description = "Measures the displayed width of unicode strings in a terminal"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "wcwidth-0.6.0-py3-none-any.whl", hash = "sha256:1a3a1e510b553315f8e146c54764f4fb6264ffad731b3d78088cdb1478ffbdad"},
     {file = "wcwidth-0.6.0.tar.gz", hash = "sha256:cdc4e4262d6ef9a1a57e018384cbeb1208d8abbc64176027e2c2455c81313159"},
@@ -2677,6 +2883,7 @@ version = "1.0.0"
 description = "A YAML configuration manager"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "yacman-1.0.0-py3-none-any.whl", hash = "sha256:a63f65b53597d147472925833ffc158e534902f69bb1fe68b731e975ac8c1755"},
     {file = "yacman-1.0.0.tar.gz", hash = "sha256:203d8159709c6f2ba7cb2c99c96f0386de3a2d30fc1d26c38226f16d1f8c1b55"},
@@ -2690,9 +2897,9 @@ ubiquerg = ">=0.9.1"
 test = ["pytest", "pytest-cov"]
 
 [extras]
-docs = ["pyyaml"]
+docs = ["ollama", "pyyaml"]
 
 [metadata]
-lock-version = "2.0"
+lock-version = "2.1"
 python-versions = "<3.13,>=3.10"
-content-hash = "449bd2c60421807c8e50100f1c9294fc03ccc2d28576ea6fdb39f27196930eb8"
+content-hash = "086e7d07c39262b4ff2596c0462d1faaa5a9e04a4f70cf5ab7d49737298874d3"
diff --git a/pyproject.toml b/pyproject.toml
index 449fb4a9..81e462d0 100755
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -51,6 +51,7 @@ pdiff = "^1.1.4"
 pillow = ">=12.1.1"
 pyflakes = "^3.4.0"
 pyjwt = ">=2.12.0"
+ollama = {version = ">=0.6.1", optional = true}
 pyyaml = {version = ">=6.0", optional = true}
 setuptools = ">=78.1.1"
 requests = ">=2.32.4"
@@ -58,7 +59,7 @@ urllib3 = ">=2.6.3"
 virtualenv = ">=20.36.1"
 
 [tool.poetry.extras]
-docs = ["pyyaml"]
+docs = ["pyyaml", "ollama"]
 
 [tool.poetry.scripts]
 nf-neuro-convert-module = "docs.astro.convert_module:main"