fix work directory for action

Author: mashehu

.github/actions/create-lint-wf/action.yml

@@ -40,7 +40,7 @@ runs:
       run: |
         pip install prek
         prek run --all-files --config .pre-commit-config.yaml
-      working-directory: create-lint-wf
+      working-directory: create-lint-wf/nf-core-testpipeline
 
     # Update modules to the latest version
     - name: nf-core modules update

.github/workflows/create-test-lint-wf-template.yml

@@ -150,7 +150,7 @@ jobs:
         run: |
           pip install prek
           prek run --all-files --config .pre-commit-config.yaml
-        working-directory: create-test-lint-wf
+        working-directory: create-test-lint-wf/my-prefix-testpipeline
 
       # Remove TODO statements
       - name: remove TODO
@@ -180,8 +180,8 @@ jobs:
       # Run code style linting
       - name: run pre-commit
         shell: bash
-        run: prek run --all-files
-        working-directory: create-test-lint-wf
+        run: prek run --all-files --config .pre-commit-config.yaml
+        working-directory: create-test-lint-wf/my-prefix-testpipeline
 
       # Run bump-version
       - name: nf-core pipelines bump-version