diff --git a/modules/nf-core/genescopefk/main.nf b/modules/nf-core/genescopefk/main.nf index 799153b6150b..75b0cd16ed92 100644 --- a/modules/nf-core/genescopefk/main.nf +++ b/modules/nf-core/genescopefk/main.nf @@ -3,7 +3,7 @@ process GENESCOPEFK { label 'process_low' // WARN: Version information not provided by tool on CLI. Please update version string below when bumping container versions. - container 'ghcr.io/nbisweden/fastk_genescopefk_merquryfk:1.2' + container 'ghcr.io/nbisweden/fastk_genescopefk_merquryfk:1.3' input: tuple val(meta), path(fastk_histex_histogram) @@ -37,7 +37,7 @@ process GENESCOPEFK { --output . \\ --name_prefix ${prefix} - printf -v KMERCOV "%.2f" \$( grep "^kmercov" *_model.txt | cut -d" " -f2 ) + KMERCOV=\$( awk '/^kmercov/ {printf "%.2f", \$2}' *_model.txt ) cat <<-END_VERSIONS > versions.yml "${task.process}": @@ -57,7 +57,7 @@ process GENESCOPEFK { touch "${prefix}_transformed_linear_plot.png" touch "${prefix}_transformed_log_plot.png" - printf -v KMERCOV "%.2f" \$( grep "^kmercov" *_model.txt | cut -d" " -f2 ) + KMERCOV=\$( awk '/^kmercov/ {printf "%.2f", \$2}' *_model.txt ) cat <<-END_VERSIONS > versions.yml "${task.process}":