Currently, we use QIIME 2020.2 in AXIOME. We can update to the latest version of QIIME2.
QIIME2 installation via docker: https://quay.io/repository/qiime2/core?tab=tags&tag=2023.5
Docker images: https://quay.io/repository/qiime2/core?tab=tags
Since some people in the lab are still using old QIIME version, it might make sense to spin up two AXIOME deployments: one old (2020.2) and one new.
production old = port 8080
production new = port 8082
test = port 8081
We may need to set the RUN_ENV in docker compose yaml based on port number instead of "test" or "official"
Currently, we use QIIME 2020.2 in AXIOME. We can update to the latest version of QIIME2.
QIIME2 installation via docker: https://quay.io/repository/qiime2/core?tab=tags&tag=2023.5
Docker images: https://quay.io/repository/qiime2/core?tab=tags
Since some people in the lab are still using old QIIME version, it might make sense to spin up two AXIOME deployments: one old (2020.2) and one new.
production old = port 8080
production new = port 8082
test = port 8081
We may need to set the RUN_ENV in docker compose yaml based on port number instead of "test" or "official"