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I described the problem in webfactory/ssh-agent#149 and I'm not actually sure which action needs to be fixed, but it would certainly be helpful to collaborate to find a suitable solution.
The webfactory/ssh-agent action allows specifying a private SSH key to fetch dependencies via CMake's FetchContent functionality. It seems to work successfully on all major platforms: Linux, macOS and Windows, but I'm not sure how to make it work from within the msys2 shell.