diff --git a/.gitignore b/.gitignore index 196fb6fb..ca9104d9 100644 --- a/.gitignore +++ b/.gitignore @@ -62,3 +62,5 @@ Rproj.user *.Rprofile renv/ _processedLockFile.lock + +.vscode/ diff --git a/NAMESPACE b/NAMESPACE index ccae865c..96de9047 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -6,6 +6,7 @@ export(doeFactorial) export(doeResponseSurfaceMethodology) export(msaAttribute) export(msaGaugeLinearity) +export(multivariateControlCharts) export(msaGaugeRR) export(msaGaugeRRnonrep) export(msaTestRetest) diff --git a/R/multivariateControlCharts.R b/R/multivariateControlCharts.R new file mode 100644 index 00000000..be5642e3 --- /dev/null +++ b/R/multivariateControlCharts.R @@ -0,0 +1,800 @@ +# +# Copyright (C) 2013-2026 University of Amsterdam +# +# This program is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, or +# (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with this program. If not, see . +# + +#' @export +multivariateControlCharts <- function(jaspResults, dataset, options) { + + variables <- unlist(options[["variables"]]) + variables <- variables[variables != ""] + stage <- unlist(options[["stage"]]) + stage <- if (length(stage) == 0 || identical(stage, "")) "" else stage + axisLabels <- unlist(options[["axisLabels"]]) + axisLabels <- if (length(axisLabels) == 0 || identical(axisLabels, "")) "" else axisLabels + + ready <- length(variables) >= 2 + + .multivariateMinimumVariablesMessage(jaspResults, ready) + + if (is.null(dataset)) { + numericCols <- if (ready) variables else NULL + factorCols <- c(stage, axisLabels) + factorCols <- factorCols[factorCols != ""] + if (length(factorCols) == 0) + factorCols <- NULL + dataset <- .readDataSetToEnd(columns.as.numeric = numericCols, + columns.as.factor = factorCols) + } + + if (ready) { + .hasErrors(dataset, + type = c("infinity", "observations", "variance"), + infinity.target = variables, + observations.amount = "< 3", + observations.target = variables, + variance.target = variables, + exitAnalysisIfErrors = TRUE) + } + + # Validate stage column + if (ready && stage != "") { + stageLevels <- levels(dataset[[stage]]) + if (length(stageLevels) < 2) + .quitAnalysis(gettext("The stage variable must have at least two levels to define training and test phases.")) + } + + .multivariateComputeModel(jaspResults, dataset, options, variables, stage, ready) + .multivariateTsqChart(jaspResults, dataset, options, variables, stage, ready) + .multivariateSummaryTable(jaspResults, dataset, options, variables, stage, ready) + .multivariateCenterTable(jaspResults, dataset, options, variables, stage, ready) + .multivariateCovarianceTable(jaspResults, dataset, options, variables, stage, ready) + .multivariateTsqTable(jaspResults, dataset, options, variables, stage, ready) + .multivariateExportTsqColumn(jaspResults, dataset, options, variables, stage, ready) +} + +.multivariateMinimumVariablesMessage <- function(jaspResults, ready) { + if (ready) + return() + + jaspResults[["minimumVariablesMessage"]] <- createJaspHtml( + title = "", + text = gettext("Enter at least two variables to start the analysis."), + elementType = "p", + position = 0 + ) + jaspResults[["minimumVariablesMessage"]]$dependOn(c("variables")) +} + +.multivariateComputeDependencies <- function() { + c("variables", "confidenceLevel", "confidenceLevelAutomatic", "stage", "trainingLevel") +} + +.multivariateOutputDependencies <- function() { + c(.multivariateComputeDependencies(), "axisLabels", "plotColorScheme") +} + +.multivariatePlotColors <- function(options) { + colorScheme <- options[["plotColorScheme"]] + if (is.null(colorScheme) || colorScheme == "") + colorScheme <- "standard" + + if (colorScheme == "colorblind") { + return(list( + inControl = "#0072B2", # blue + outOfControl = "#E69F00" # orange + )) + } + + list( + inControl = "blue", + outOfControl = "red" + ) +} + +.multivariateComputeModel <- function(jaspResults, dataset, options, variables, stage, ready) { + if (!is.null(jaspResults[["modelState"]])) + return() + + modelState <- createJaspState() + modelState$dependOn(.multivariateComputeDependencies()) + jaspResults[["modelState"]] <- modelState + + if (!ready) + return() + + hasStage <- stage != "" + + dataMatrix <- as.data.frame(dataset[, variables, drop = FALSE]) + if (hasStage) + stageVector <- dataset[[stage]] + + # remove rows with any NA across variables (and stage if present) + if (hasStage) { + completeRows <- stats::complete.cases(dataMatrix) & !is.na(stageVector) + } else { + completeRows <- stats::complete.cases(dataMatrix) + } + nDropped <- sum(!completeRows) + dataMatrix <- dataMatrix[completeRows, , drop = FALSE] + if (hasStage) + stageVector <- stageVector[completeRows] + + p <- length(variables) + if (options[["confidenceLevelAutomatic"]]) { + confidenceLevel <- (1 - 0.0027)^p + } else { + confidenceLevel <- options[["confidenceLevel"]] + } + + if (hasStage) { + # Phase I/II split + trainingLevel <- options[["trainingLevel"]] + if (trainingLevel == "") + trainingLevel <- levels(stageVector)[1] + + isTraining <- stageVector == trainingLevel + trainingData <- dataMatrix[isTraining, , drop = FALSE] + testData <- dataMatrix[!isTraining, , drop = FALSE] + + if (nrow(trainingData) < 3) { + modelState$object <- list(error = gettext("The training phase must contain at least 3 observations.")) + return() + } + + # Check singularity on training data covariance + covMatrix <- stats::cov(trainingData) + rcond <- tryCatch(rcond(covMatrix), error = function(e) 0) + if (rcond < .Machine$double.eps) { + modelState$object <- list(error = gettext("The covariance matrix of the training phase is computationally singular. This typically occurs when variables are linearly dependent or nearly perfectly correlated. Please remove redundant variables.")) + return() + } + + hasTestData <- nrow(testData) > 0 + if (hasTestData) { + mqccResult <- try(qcc::mqcc(trainingData, type = "T2.single", + newdata = testData, + pred.limits = TRUE, + confidence.level = confidenceLevel, + plot = FALSE)) + } else { + mqccResult <- try(qcc::mqcc(trainingData, type = "T2.single", + confidence.level = confidenceLevel, + plot = FALSE)) + } + + if (jaspBase::isTryError(mqccResult)) { + modelState$object <- list(error = .extractErrorMessage(mqccResult)) + return() + } + + phaseLabels <- as.character(stageVector) + + modelState$object <- list( + mqccResult = mqccResult, + nDropped = nDropped, + confidenceLevel = confidenceLevel, + hasStage = TRUE, + hasTestData = hasTestData, + trainingLevel = trainingLevel, + phaseLabels = phaseLabels, + nTraining = nrow(trainingData), + nTest = nrow(testData) + ) + + } else { + # Single-phase (original behavior) + covMatrix <- stats::cov(dataMatrix) + rcond <- tryCatch(rcond(covMatrix), error = function(e) 0) + if (rcond < .Machine$double.eps) { + modelState$object <- list(error = gettext("The covariance matrix of the selected variables is computationally singular. This typically occurs when variables are linearly dependent or nearly perfectly correlated. Please remove redundant variables.")) + return() + } + mqccResult <- try(qcc::mqcc(dataMatrix, type = "T2.single", + confidence.level = confidenceLevel, + plot = FALSE)) + + if (jaspBase::isTryError(mqccResult)) { + modelState$object <- list(error = .extractErrorMessage(mqccResult)) + return() + } + + modelState$object <- list( + mqccResult = mqccResult, + nDropped = nDropped, + confidenceLevel = confidenceLevel, + hasStage = FALSE + ) + } +} + +.multivariateAxisInfo <- function(dataset, options, variables, stage, stateObj) { + axisLabelVariable <- unlist(options[["axisLabels"]]) + axisLabelVariable <- if (length(axisLabelVariable) == 0 || identical(axisLabelVariable, "")) "" else axisLabelVariable + + if (axisLabelVariable == "") + return(list(axisLabels = "", xAxisTitle = gettext("Sample"), axisLabelVariable = "")) + + hasStage <- stage != "" + + dataMatrix <- as.data.frame(dataset[, variables, drop = FALSE]) + if (hasStage) + stageVector <- dataset[[stage]] + + # Must match the model's row filtering (variables + stage only) + if (hasStage) { + completeRows <- stats::complete.cases(dataMatrix) & !is.na(stageVector) + } else { + completeRows <- stats::complete.cases(dataMatrix) + } + + axisLabelsVector <- dataset[[axisLabelVariable]][completeRows] + + if (hasStage) { + stageVector <- stageVector[completeRows] + trainingLevel <- stateObj$trainingLevel + if (is.null(trainingLevel) || trainingLevel == "") + trainingLevel <- levels(stageVector)[1] + isTraining <- stageVector == trainingLevel + axisLabelsVector <- c(axisLabelsVector[isTraining], axisLabelsVector[!isTraining]) + } + + list(axisLabels = as.character(axisLabelsVector), xAxisTitle = axisLabelVariable, axisLabelVariable = axisLabelVariable) +} + +.multivariateXAxisTextTheme <- function(axisLabels) { + if (length(axisLabels) == 0 || identical(axisLabels, "")) + return(ggplot2::theme()) + + labelLengths <- nchar(axisLabels) + labelLengths <- labelLengths[!is.na(labelLengths)] + if (length(labelLengths) == 0) + return(ggplot2::theme()) + + # Timestamps/IDs can be long; angle + extra bottom margin avoids overlap. + if (max(labelLengths) <= 10) + return(ggplot2::theme()) + + ggplot2::theme( + axis.text.x = ggplot2::element_text(angle = 45, hjust = 1, vjust = 1), + plot.margin = ggplot2::unit(c(.5, .5, 1.2, .5), "cm") + ) +} + +.multivariateTsqChart <- function(jaspResults, dataset, options, variables, stage, ready) { + if (!is.null(jaspResults[["tsqChart"]])) + return() + + chartTitle <- gettext("Hotelling T\u00B2 Control Chart") + + axisLabelVariable <- unlist(options[["axisLabels"]]) + axisLabelVariable <- if (length(axisLabelVariable) == 0 || identical(axisLabelVariable, "")) "" else axisLabelVariable + hasAxisLabels <- axisLabelVariable != "" + + jaspPlot <- createJaspPlot(title = chartTitle, + width = if (hasAxisLabels) 1200 else 700, + height = if (hasAxisLabels) 500 else 400) + jaspPlot$position <- 1 + jaspPlot$info <- gettext("Displays the Hotelling T\u00B2 statistic for each sample with upper and lower control limits. Points exceeding the UCL are flagged as out of control.") + jaspPlot$dependOn(.multivariateOutputDependencies()) + jaspResults[["tsqChart"]] <- jaspPlot + + if (!ready) + return() + + stateObj <- jaspResults[["modelState"]]$object + if (!is.null(stateObj$error)) { + jaspPlot$setError(stateObj$error) + return() + } + + mqccResult <- stateObj$mqccResult + + if (isTRUE(stateObj$hasStage) && isTRUE(stateObj$hasTestData)) { + jaspPlot$plotObject <- .multivariateTsqChartPhased(dataset, options, variables, stage, stateObj) + } else { + jaspPlot$plotObject <- .multivariateTsqChartSingle(dataset, options, variables, stage, stateObj) + } +} + +.multivariateTsqChartSingle <- function(dataset, options, variables, stage, stateObj) { + mqccResult <- stateObj$mqccResult + colors <- .multivariatePlotColors(options) + tsqValues <- as.numeric(mqccResult$statistics) + ucl <- as.numeric(mqccResult$limits[, "UCL"]) + lcl <- as.numeric(mqccResult$limits[, "LCL"]) + n <- length(tsqValues) + sample <- seq_len(n) + + axisInfo <- .multivariateAxisInfo(dataset, options, variables, stage, stateObj) + axisLabels <- axisInfo$axisLabels + xAxisTitle <- axisInfo$xAxisTitle + + violation <- tsqValues > ucl + dotColor <- ifelse(violation, colors$outOfControl, colors$inControl) + + pointData <- data.frame( + sample = sample, + tsq = tsqValues, + dotColor = dotColor, + stringsAsFactors = FALSE + ) + + yBreakDeterminants <- c(tsqValues, ucl, lcl, 0) + yBreaks <- jaspGraphs::getPrettyAxisBreaks(yBreakDeterminants) + yLimits <- range(yBreaks) + + xBreaks <- unique(as.integer(jaspGraphs::getPrettyAxisBreaks(sample))) + if (xBreaks[1] == 0) + xBreaks[1] <- 1 + xLimits <- c(0.5, max(xBreaks) * 1.2 + 0.5) + + if (!identical(axisLabels, "")) { + if (max(xBreaks) > length(axisLabels)) + xBreaks[length(xBreaks)] <- length(axisLabels) + xLabels <- axisLabels[xBreaks] + } else { + xLabels <- xBreaks + } + + lineXEnd <- n + 0.5 + labelX <- n * 1.06 + limitLabels <- data.frame( + x = c(labelX, labelX), + y = c(ucl, lcl), + label = c(gettextf("UCL = %s", round(ucl, 3)), + gettextf("LCL = %s", round(lcl, 3))) + ) + + plotObject <- ggplot2::ggplot(pointData, ggplot2::aes(x = sample, y = tsq)) + + ggplot2::geom_segment(ggplot2::aes(x = 0.5, xend = lineXEnd, y = ucl, yend = ucl), + col = colors$outOfControl, linewidth = 1.5, linetype = "dashed", inherit.aes = FALSE) + + ggplot2::geom_segment(ggplot2::aes(x = 0.5, xend = lineXEnd, y = lcl, yend = lcl), + col = colors$outOfControl, linewidth = 1.5, linetype = "dashed", inherit.aes = FALSE) + + jaspGraphs::geom_line(mapping = ggplot2::aes(x = sample, y = tsq), col = colors$inControl, na.rm = TRUE) + + jaspGraphs::geom_point(mapping = ggplot2::aes(x = sample, y = tsq), + size = 4, fill = dotColor, inherit.aes = TRUE, na.rm = TRUE) + + ggplot2::geom_label(data = limitLabels, mapping = ggplot2::aes(x = x, y = y, label = label), + inherit.aes = FALSE, size = 4.5, hjust = 0, na.rm = TRUE) + + ggplot2::scale_y_continuous(name = gettext("Hotelling T\u00B2"), breaks = yBreaks, limits = yLimits) + + ggplot2::scale_x_continuous(name = xAxisTitle, breaks = xBreaks, limits = xLimits, labels = xLabels) + + jaspGraphs::geom_rangeframe() + + jaspGraphs::themeJaspRaw() + + .multivariateXAxisTextTheme(xLabels) + + return(plotObject) +} + +.multivariateTsqChartPhased <- function(dataset, options, variables, stage, stateObj) { + mqccResult <- stateObj$mqccResult + colors <- .multivariatePlotColors(options) + nTraining <- stateObj$nTraining + nTest <- stateObj$nTest + nTotal <- nTraining + nTest + + # T\u00B2 values + phase1Tsq <- as.numeric(mqccResult$statistics) + phase2Tsq <- as.numeric(mqccResult$newstats) + allTsq <- c(phase1Tsq, phase2Tsq) + + # Limits + phase1Ucl <- as.numeric(mqccResult$limits[, "UCL"]) + phase1Lcl <- as.numeric(mqccResult$limits[, "LCL"]) + phase2Ucl <- as.numeric(mqccResult$pred.limits[, "UPL"]) + phase2Lcl <- as.numeric(mqccResult$pred.limits[, "LPL"]) + + sample <- seq_len(nTotal) + + axisInfo <- .multivariateAxisInfo(dataset, options, variables, stage, stateObj) + axisLabels <- axisInfo$axisLabels + xAxisTitle <- axisInfo$xAxisTitle + + # Violations per phase + violation1 <- phase1Tsq > phase1Ucl + violation2 <- phase2Tsq > phase2Ucl + dotColor <- c(ifelse(violation1, colors$outOfControl, colors$inControl), + ifelse(violation2, colors$outOfControl, colors$inControl)) + + # Phase label for grouping + phase <- c(rep("Phase I", nTraining), rep("Phase II", nTest)) + + pointData <- data.frame( + sample = sample, + tsq = allTsq, + phase = phase, + dotColor = dotColor, + stringsAsFactors = FALSE + ) + + # Control limit segments (per phase) + clData <- data.frame( + xmin = c(0.5, nTraining + 0.5), + xmax = c(nTraining + 0.5, nTotal + 0.5), + ucl = c(phase1Ucl, phase2Ucl), + lcl = c(phase1Lcl, phase2Lcl), + phase = c("Phase I", "Phase II"), + stringsAsFactors = FALSE + ) + + # Axis + yBreakDeterminants <- c(allTsq, phase1Ucl, phase1Lcl, phase2Ucl, phase2Lcl, 0) + yBreaks <- jaspGraphs::getPrettyAxisBreaks(yBreakDeterminants) + yLimits <- range(yBreaks) + + xBreaks <- unique(as.integer(jaspGraphs::getPrettyAxisBreaks(sample))) + if (xBreaks[1] == 0) + xBreaks[1] <- 1 + xLimits <- c(0.5, max(xBreaks) * 1.2 + 0.5) + + if (!identical(axisLabels, "")) { + if (max(xBreaks) > length(axisLabels)) + xBreaks[length(xBreaks)] <- length(axisLabels) + xLabels <- axisLabels[xBreaks] + } else { + xLabels <- xBreaks + } + + # Limit labels at right endpoint of each phase's segment + phase1LabelX <- clData$xmax[1] + 0.5 + phase2LabelX <- clData$xmax[2] + 0.5 + labelData <- data.frame( + x = c(phase1LabelX, phase2LabelX, + phase1LabelX, phase2LabelX), + y = c(phase1Ucl, phase2Ucl, phase1Lcl, phase2Lcl), + label = c(gettextf("UCL = %s", round(phase1Ucl, 3)), + gettextf("UCL = %s", round(phase2Ucl, 3)), + gettextf("LCL = %s", round(phase1Lcl, 3)), + gettextf("LCL = %s", round(phase2Lcl, 3))), + stringsAsFactors = FALSE + ) + + # Phase label positions + phaseLabelData <- data.frame( + x = c((0.5 + nTraining + 0.5) / 2, + (nTraining + 0.5 + nTotal + 0.5) / 2), + y = rep(max(yLimits), 2), + label = c(gettextf("Training (%s)", stateObj$trainingLevel), + gettext("Test")), + stringsAsFactors = FALSE + ) + + plotObject <- ggplot2::ggplot(pointData, ggplot2::aes(x = sample, y = tsq)) + + # Limit lines per phase as segments + ggplot2::geom_segment(data = clData, + mapping = ggplot2::aes(x = xmin, xend = xmax, y = ucl, yend = ucl), + col = colors$outOfControl, linewidth = 1.5, linetype = "dashed", inherit.aes = FALSE) + + ggplot2::geom_segment(data = clData, + mapping = ggplot2::aes(x = xmin, xend = xmax, y = lcl, yend = lcl), + col = colors$outOfControl, linewidth = 1.5, linetype = "dashed", inherit.aes = FALSE) + + # Phase separator + ggplot2::geom_vline(xintercept = nTraining + 0.5, linetype = "solid", col = "darkgray", linewidth = 1) + + # Data lines per phase (break at separator) + jaspGraphs::geom_line(data = pointData[pointData$phase == "Phase I", ], + mapping = ggplot2::aes(x = sample, y = tsq), col = colors$inControl, na.rm = TRUE) + + jaspGraphs::geom_line(data = pointData[pointData$phase == "Phase II", ], + mapping = ggplot2::aes(x = sample, y = tsq), col = colors$inControl, na.rm = TRUE) + + jaspGraphs::geom_point(mapping = ggplot2::aes(x = sample, y = tsq), + size = 4, fill = dotColor, inherit.aes = TRUE, na.rm = TRUE) + + # Limit labels + ggplot2::geom_label(data = labelData, mapping = ggplot2::aes(x = x, y = y, label = label), + inherit.aes = FALSE, size = 4.5, hjust = 0, na.rm = TRUE) + + # Phase labels at top + ggplot2::geom_text(data = phaseLabelData, mapping = ggplot2::aes(x = x, y = y, label = label), + inherit.aes = FALSE, size = 4, fontface = "bold", vjust = 1.5) + + ggplot2::scale_y_continuous(name = gettext("Hotelling T\u00B2"), breaks = yBreaks, limits = yLimits) + + ggplot2::scale_x_continuous(name = xAxisTitle, breaks = xBreaks, limits = xLimits, labels = xLabels) + + jaspGraphs::geom_rangeframe() + + jaspGraphs::themeJaspRaw() + + .multivariateXAxisTextTheme(xLabels) + + return(plotObject) +} + +.multivariateSummaryTable <- function(jaspResults, dataset, options, variables, stage, ready) { + if (!is.null(jaspResults[["summaryTable"]])) + return() + + table <- createJaspTable(title = gettext("Hotelling T\u00B2 Control Chart Summary")) + table$position <- 2 + table$info <- gettext("Summary of the Hotelling T\u00B2 control chart, including the number of variables, observations, confidence level, control limits, and the determinant of the covariance matrix.") + table$dependOn(.multivariateComputeDependencies()) + table$showSpecifiedColumnsOnly <- TRUE + + jaspResults[["summaryTable"]] <- table + + if (!ready) + return() + + stateObj <- jaspResults[["modelState"]]$object + if (!is.null(stateObj$error)) { + table$setError(stateObj$error) + return() + } + + mqccResult <- stateObj$mqccResult + + if (stateObj$nDropped > 0) + table$addFootnote(gettextf("Removed %i observation(s) with missing values.", stateObj$nDropped)) + + if (isTRUE(stateObj$hasStage) && isTRUE(stateObj$hasTestData)) { + # Two-row table: one per phase + table$addColumnInfo(name = "phase", title = gettext("Phase"), type = "string") + table$addColumnInfo(name = "numVariables", title = gettext("Number of Variables"), type = "integer") + table$addColumnInfo(name = "numObservations", title = gettext("Number of Observations"), type = "integer") + table$addColumnInfo(name = "confidenceLevel", title = gettext("Confidence Level"), type = "number") + table$addColumnInfo(name = "lcl", title = gettext("LCL"), type = "number") + table$addColumnInfo(name = "ucl", title = gettext("UCL"), type = "number") + table$addColumnInfo(name = "detS", title = gettext("|S|"), type = "number") + + phase1Ucl <- as.numeric(mqccResult$limits[, "UCL"]) + phase1Lcl <- as.numeric(mqccResult$limits[, "LCL"]) + phase2Ucl <- as.numeric(mqccResult$pred.limits[, "UPL"]) + phase2Lcl <- as.numeric(mqccResult$pred.limits[, "LPL"]) + + table$addRows(list( + phase = gettextf("Training (%s)", stateObj$trainingLevel), + numVariables = length(variables), + numObservations = stateObj$nTraining, + confidenceLevel = stateObj$confidenceLevel, + lcl = phase1Lcl, + ucl = phase1Ucl, + detS = det(mqccResult$cov) + )) + + table$addRows(list( + phase = gettext("Test"), + numVariables = length(variables), + numObservations = stateObj$nTest, + confidenceLevel = stateObj$confidenceLevel, + lcl = phase2Lcl, + ucl = phase2Ucl, + detS = det(mqccResult$cov) + )) + + table$addFootnote(gettext("Control limits for the training phase use the Beta distribution; test phase limits use the F distribution (prediction limits).")) + + } else { + table$addColumnInfo(name = "numVariables", title = gettext("Number of Variables"), type = "integer") + table$addColumnInfo(name = "numObservations", title = gettext("Number of Observations"), type = "integer") + table$addColumnInfo(name = "confidenceLevel", title = gettext("Confidence Level"), type = "number") + table$addColumnInfo(name = "lcl", title = gettext("LCL"), type = "number") + table$addColumnInfo(name = "ucl", title = gettext("UCL"), type = "number") + table$addColumnInfo(name = "detS", title = gettext("|S|"), type = "number") + + table$addRows(list( + numVariables = length(variables), + numObservations = length(mqccResult$statistics), + confidenceLevel = stateObj$confidenceLevel, + lcl = as.numeric(mqccResult$limits[, "LCL"]), + ucl = as.numeric(mqccResult$limits[, "UCL"]), + detS = det(mqccResult$cov) + )) + } +} + +.multivariateCenterTable <- function(jaspResults, dataset, options, variables, stage, ready) { + if (!options[["centerTable"]]) + return() + + if (!is.null(jaspResults[["centerTable"]])) + return() + + table <- createJaspTable(title = gettext("Variable Centers")) + table$position <- 3 + table$info <- gettext("Displays the sample mean of each variable used in the multivariate control chart.") + table$dependOn(c(.multivariateComputeDependencies(), "centerTable")) + table$showSpecifiedColumnsOnly <- TRUE + + table$addColumnInfo(name = "variable", title = gettext("Variable"), type = "string") + table$addColumnInfo(name = "center", title = gettext("Center"), type = "number") + + jaspResults[["centerTable"]] <- table + + if (!ready) + return() + + stateObj <- jaspResults[["modelState"]]$object + if (!is.null(stateObj$error)) { + table$setError(stateObj$error) + return() + } + + mqccResult <- stateObj$mqccResult + centers <- mqccResult$center + + rows <- data.frame( + variable = names(centers), + center = as.numeric(centers), + stringsAsFactors = FALSE + ) + + table$setData(rows) + + if (isTRUE(stateObj$hasStage)) + table$addFootnote(gettextf("Centers estimated from training phase (%s) only.", stateObj$trainingLevel)) +} + +.multivariateCovarianceTable <- function(jaspResults, dataset, options, variables, stage, ready) { + if (!options[["covarianceMatrixTable"]]) + return() + + if (!is.null(jaspResults[["covarianceTable"]])) + return() + + table <- createJaspTable(title = gettext("Covariance Matrix")) + table$position <- 4 + table$info <- gettext("Displays the sample covariance matrix of the selected variables, used to compute the Hotelling T\u00B2 statistic.") + table$dependOn(c(.multivariateComputeDependencies(), "covarianceMatrixTable")) + table$showSpecifiedColumnsOnly <- TRUE + + jaspResults[["covarianceTable"]] <- table + + if (!ready) + return() + + stateObj <- jaspResults[["modelState"]]$object + if (!is.null(stateObj$error)) { + table$setError(stateObj$error) + return() + } + + mqccResult <- stateObj$mqccResult + covMatrix <- mqccResult$cov + varNames <- colnames(covMatrix) + + # Row label column + table$addColumnInfo(name = "variable", title = "", type = "string") + + for (v in varNames) + table$addColumnInfo(name = v, title = v, type = "number") + + for (i in seq_along(varNames)) { + row <- list(variable = varNames[i]) + for (j in seq_along(varNames)) + row[[varNames[j]]] <- covMatrix[i, j] + table$addRows(row) + } + + if (isTRUE(stateObj$hasStage)) + table$addFootnote(gettextf("Covariance matrix estimated from training phase (%s) only.", stateObj$trainingLevel)) +} + +.multivariateExportTsqColumn <- function(jaspResults, dataset, options, variables, stage, ready) { + if (!ready || !options[["addTsqToData"]] || options[["tsqColumn"]] == "") + return() + + if (!is.null(jaspResults[["tsqColumn"]])) + return() + + stateObj <- jaspResults[["modelState"]]$object + if (is.null(stateObj) || !is.null(stateObj$error)) + return() + + mqccResult <- stateObj$mqccResult + + if (isTRUE(stateObj$hasStage) && isTRUE(stateObj$hasTestData)) { + # Concatenate Phase I and Phase II T² values in original row order + phase1Tsq <- as.numeric(mqccResult$statistics) + phase2Tsq <- as.numeric(mqccResult$newstats) + phaseLabels <- stateObj$phaseLabels + tsqValues <- numeric(length(phaseLabels)) + tsqValues[phaseLabels == stateObj$trainingLevel] <- phase1Tsq + tsqValues[phaseLabels != stateObj$trainingLevel] <- phase2Tsq + } else { + tsqValues <- as.numeric(mqccResult$statistics) + } + + jaspResults[["tsqColumn"]] <- createJaspColumn(columnName = options[["tsqColumn"]]) + jaspResults[["tsqColumn"]]$dependOn(c(.multivariateComputeDependencies(), "addTsqToData", "tsqColumn")) + jaspResults[["tsqColumn"]]$setScale(tsqValues) +} + +.multivariateTsqTable <- function(jaspResults, dataset, options, variables, stage, ready) { + if (!options[["tSquaredValuesTable"]]) + return() + + if (!is.null(jaspResults[["tsqValuesTable"]])) + return() + + table <- createJaspTable(title = gettext("Hotelling T\u00B2 Values")) + table$position <- 5 + table$info <- gettext("Lists the Hotelling T\u00B2 statistic for each sample and indicates whether the sample is in or out of control.") + table$dependOn(c(.multivariateOutputDependencies(), "tSquaredValuesTable")) + table$showSpecifiedColumnsOnly <- TRUE + + table$addColumnInfo(name = "sample", title = gettext("Sample"), type = "integer") + + axisLabelVariable <- unlist(options[["axisLabels"]]) + axisLabelVariable <- if (length(axisLabelVariable) == 0 || identical(axisLabelVariable, "")) "" else axisLabelVariable + hasAxisLabels <- axisLabelVariable != "" + if (hasAxisLabels) + table$addColumnInfo(name = "timestamp", title = axisLabelVariable, type = "string") + + table$addColumnInfo(name = "tsq", title = gettext("T\u00B2"), type = "number") + table$addColumnInfo(name = "status", title = gettext("Status"), type = "string") + + jaspResults[["tsqValuesTable"]] <- table + + if (!ready) + return() + + stateObj <- jaspResults[["modelState"]]$object + if (!is.null(stateObj$error)) { + table$setError(stateObj$error) + return() + } + + mqccResult <- stateObj$mqccResult + + axisInfo <- NULL + if (hasAxisLabels) + axisInfo <- .multivariateAxisInfo(dataset, options, variables, stage, stateObj) + + if (isTRUE(stateObj$hasStage) && isTRUE(stateObj$hasTestData)) { + # Add phase column + table$addColumnInfo(name = "phase", title = gettext("Phase"), type = "string", overtitle = "") + + phase1Tsq <- as.numeric(mqccResult$statistics) + phase2Tsq <- as.numeric(mqccResult$newstats) + allTsq <- c(phase1Tsq, phase2Tsq) + + phase1Ucl <- as.numeric(mqccResult$limits[, "UCL"]) + phase2Ucl <- as.numeric(mqccResult$pred.limits[, "UPL"]) + + nTraining <- stateObj$nTraining + nTest <- stateObj$nTest + + phase <- c(rep(gettextf("Training (%s)", stateObj$trainingLevel), nTraining), + rep(gettext("Test"), nTest)) + ucl <- c(rep(phase1Ucl, nTraining), rep(phase2Ucl, nTest)) + + table$addFootnote(gettextf("Training UCL = %s, Test UCL = %s", + round(phase1Ucl, 4), round(phase2Ucl, 4))) + + rows <- data.frame( + sample = seq_along(allTsq), + tsq = allTsq, + status = ifelse(allTsq > ucl, + gettext("Out of control"), + gettext("In control")), + phase = phase, + stringsAsFactors = FALSE + ) + if (hasAxisLabels) + rows$timestamp <- axisInfo$axisLabels + + table$setData(rows) + + } else { + tsqValues <- as.numeric(mqccResult$statistics) + ucl <- as.numeric(mqccResult$limits[, "UCL"]) + lcl <- as.numeric(mqccResult$limits[, "LCL"]) + + table$addFootnote(gettextf("UCL = %s, LCL = %s", round(ucl, 4), round(lcl, 4))) + + rows <- data.frame( + sample = seq_along(tsqValues), + tsq = tsqValues, + status = ifelse(tsqValues > ucl, + gettext("Out of control"), + gettext("In control")), + stringsAsFactors = FALSE + ) + if (hasAxisLabels) + rows$timestamp <- axisInfo$axisLabels + + table$setData(rows) + } +} diff --git a/inst/Description.qml b/inst/Description.qml index 0539f86d..5fe0968a 100644 --- a/inst/Description.qml +++ b/inst/Description.qml @@ -84,6 +84,13 @@ Description func: "rareEventCharts" } + Analysis + { + title: qsTr("Multivariate Control Charts") + func: "multivariateControlCharts" + preloadData: true + } + GroupTitle { title: qsTr("Capability Analysis") diff --git a/inst/qml/multivariateControlCharts.qml b/inst/qml/multivariateControlCharts.qml new file mode 100644 index 00000000..e7d656b3 --- /dev/null +++ b/inst/qml/multivariateControlCharts.qml @@ -0,0 +1,147 @@ +import QtQuick +import QtQuick.Layouts +import JASP.Controls + +Form +{ + columns: 1 + + VariablesForm + { + preferredHeight: jaspTheme.defaultVariablesFormHeight + + AvailableVariablesList + { + name: "variablesForm" + } + + AssignedVariablesList + { + name: "variables" + title: qsTr("Variables") + allowedColumns: ["scale"] + info: qsTr("Two or more continuous quality characteristics to monitor jointly using a Hotelling T² chart.") + } + + AssignedVariablesList + { + name: "axisLabels" + title: qsTr("Timestamp (optional)") + singleVariable: true + allowedColumns: ["nominal"] + info: qsTr("Optional column used as x-axis labels (e.g., a timestamp or row identifier).") + } + + AssignedVariablesList + { + name: "stage" + id: stage + title: qsTr("Stage") + singleVariable: true + allowedColumns: ["nominal"] + info: qsTr("Optional grouping variable that splits the data into a training phase (Phase I) and a test phase (Phase II). Control limits are estimated from the training phase and applied to the test phase for anomaly detection.") + } + + DropDown + { + name: "trainingLevel" + label: qsTr("Training phase level") + source: [{name: "stage", use: "levels"}] + enabled: stage.count > 0 + info: qsTr("Select which level of the stage variable represents the training (in-control) phase. Control limits and the covariance matrix are estimated from this phase only.") + } + } + + + Group + { + + title: qsTr("Control Chart") + + CheckBox + { + name: "confidenceLevelAutomatic" + id: confidenceLevelAutomatic + label: qsTr("Automatic confidence level: (1 - 0.0027)ᵖ") + checked: true + info: qsTr("When checked, confidence level is automatically set to (1 - 0.0027)^p, where p is the number of variables. This is the standard Bonferroni-adjusted level for multivariate charts.") + } + + CIField + { + name: "confidenceLevel" + label: qsTr("Confidence level") + enabled: !confidenceLevelAutomatic.checked + info: qsTr("Custom confidence level for the control limits. Only active when automatic confidence level is unchecked.") + } + } + + + + Section + { + title: qsTr("Output") + + Group + { + CheckBox + { + name: "centerTable" + label: qsTr("Variable centers") + checked: false + info: qsTr("Show the mean of each variable.") + } + + CheckBox + { + name: "covarianceMatrixTable" + label: qsTr("Covariance matrix") + checked: false + info: qsTr("Show the sample covariance matrix of the selected variables.") + } + + CheckBox + { + name: "tSquaredValuesTable" + label: qsTr("T\u00B2 values table") + checked: false + info: qsTr("Show a table with the T\u00B2 statistic for each observation, along with the UCL and in/out-of-control status.") + } + } + + CheckBox + { + id: addTsqToData + name: "addTsqToData" + label: qsTr("Add T\u00B2 values to data") + info: qsTr("Adds the computed Hotelling T\u00B2 values as a new column in the dataset.") + + ComputedColumnField + { + name: "tsqColumn" + text: qsTr("Column name") + placeholderText: qsTr("e.g., tsq") + fieldWidth: 120 + enabled: addTsqToData.checked + } + } + + } + + Section + { + title: qsTr("Advanced Options") + + DropDown + { + name: "plotColorScheme" + label: qsTr("Plot color scheme") + indexDefaultValue: 0 + values: [ + { label: qsTr("Standard (red/blue)"), value: "standard"}, + { label: qsTr("Colorblind-friendly (orange/blue)"), value: "colorblind"} + ] + info: qsTr("Choose colors for limits and out-of-control points. The colorblind-friendly scheme uses orange instead of red.") + } + } +} diff --git a/renv.lock b/renv.lock index bec4af05..c26dac86 100644 --- a/renv.lock +++ b/renv.lock @@ -13,136 +13,394 @@ "Package": "BayesFactor", "Version": "0.9.12-4.7", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Computation of Bayes Factors for Common Designs", + "Date": "2024-01-23", + "Authors@R": "c(person(\"Richard D.\", \"Morey\", role = c(\"aut\", \"cre\", \"cph\"), email = \"richarddmorey@gmail.com\"), person(\"Jeffrey N.\", \"Rouder\", role = \"aut\", email = \"jrouder@uci.edu\"), person(\"Tahira\", \"Jamil\", role = c(\"ctb\",\"cph\"), email = \"tahjamil@gmail.com\"), person(\"Simon\", \"Urbanek\", role = c(\"ctb\", \"cph\"), email = \"simon.urbanek@r-project.org\"), person(\"Karl\", \"Forner\", role = c(\"ctb\", \"cph\"), email = \"karl.forner@gmail.com\"), person(\"Alexander\", \"Ly\", role = c(\"ctb\", \"cph\"), email = \"Alexander.Ly.NL@gmail.com\"))", + "Description": "A suite of functions for computing various Bayes factors for simple designs, including contingency tables, one- and two-sample designs, one-way designs, general ANOVA designs, and linear regression.", + "License": "GPL-2", + "VignetteBuilder": "knitr", + "Depends": [ + "R (>= 3.2.0)", "coda", + "Matrix (>= 1.1-1)" + ], + "Imports": [ + "pbapply", + "mvtnorm", + "stringr", + "utils", "graphics", - "hypergeo", - "Matrix", "MatrixModels", + "Rcpp (>= 0.11.2)", "methods", - "mvtnorm", - "pbapply", - "R", - "Rcpp", - "RcppEigen", - "stringr", - "utils" - ] + "hypergeo" + ], + "Suggests": [ + "doMC", + "foreach", + "testthat", + "knitr", + "markdown", + "rmarkdown", + "arm", + "lme4", + "xtable", + "languageR" + ], + "URL": "https://richarddmorey.github.io/BayesFactor/", + "BugReports": "https://github.com/richarddmorey/BayesFactor/issues", + "LazyLoad": "yes", + "LinkingTo": [ + "Rcpp (>= 0.11.2)", + "RcppEigen (>= 0.3.2.2.0)" + ], + "RoxygenNote": "7.2.3", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Richard D. Morey [aut, cre, cph], Jeffrey N. Rouder [aut], Tahira Jamil [ctb, cph], Simon Urbanek [ctb, cph], Karl Forner [ctb, cph], Alexander Ly [ctb, cph]", + "Maintainer": "Richard D. Morey ", + "Repository": "CRAN" }, "Cairo": { "Package": "Cairo", "Version": "1.7-0", "Source": "Repository", - "Requirements": [ - "graphics", + "Title": "R Graphics Device using Cairo Graphics Library for Creating High-Quality Bitmap (PNG, JPEG, TIFF), Vector (PDF, SVG, PostScript) and Display (X11 and Win32) Output", + "Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.org, ORCID: ), Jeffrey Horner [aut]", + "Maintainer": "Simon Urbanek ", + "Authors@R": "c(person(\"Simon\", \"Urbanek\", role=c(\"aut\",\"cre\",\"cph\"), email=\"Simon.Urbanek@r-project.org\", comment=c(\"https://urbanek.org\", ORCID=\"0000-0003-2297-1732\")), person(\"Jeffrey\", \"Horner\", role=\"aut\", email=\"jeff.horner@vanderbilt.edu\"))", + "Depends": [ + "R (>= 2.7.0)" + ], + "Imports": [ "grDevices", - "R" - ] + "graphics" + ], + "Suggests": [ + "png" + ], + "Enhances": [ + "FastRWeb" + ], + "Description": "R graphics device using cairographics library that can be used to create high-quality vector (PDF, PostScript and SVG) and bitmap output (PNG,JPEG,TIFF), and high-quality rendering in displays (X11 and Win32). Since it uses the same back-end for all output, copying across formats is WYSIWYG. Files are created without the dependence on X11 or other external programs. This device supports alpha channel (semi-transparent drawing) and resulting images can contain transparent and semi-transparent regions. It is ideal for use in server environments (file output) and as a replacement for other devices that don't have Cairo's capabilities such as alpha support or anti-aliasing. Backends are modular such that any subset of backends is supported.", + "License": "GPL-2 | GPL-3", + "SystemRequirements": "cairo (>= 1.2 http://www.cairographics.org/)", + "URL": "http://www.rforge.net/Cairo/", + "NeedsCompilation": "yes", + "Repository": "CRAN" + }, + "DBI": { + "Package": "DBI", + "Version": "1.2.3", + "Source": "Repository", + "Title": "R Database Interface", + "Date": "2024-06-02", + "Authors@R": "c( person(\"R Special Interest Group on Databases (R-SIG-DB)\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\") )", + "Description": "A database interface definition for communication between R and relational database management systems. All classes in this package are virtual and need to be extended by the various R/DBMS implementations.", + "License": "LGPL (>= 2.1)", + "URL": "https://dbi.r-dbi.org, https://github.com/r-dbi/DBI", + "BugReports": "https://github.com/r-dbi/DBI/issues", + "Depends": [ + "methods", + "R (>= 3.0.0)" + ], + "Suggests": [ + "arrow", + "blob", + "covr", + "DBItest", + "dbplyr", + "downlit", + "dplyr", + "glue", + "hms", + "knitr", + "magrittr", + "nanoarrow (>= 0.3.0.1)", + "RMariaDB", + "rmarkdown", + "rprojroot", + "RSQLite (>= 1.1-2)", + "testthat (>= 3.0.0)", + "vctrs", + "xml2" + ], + "VignetteBuilder": "knitr", + "Config/autostyle/scope": "line_breaks", + "Config/autostyle/strict": "false", + "Config/Needs/check": "r-dbi/DBItest", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.1", + "Config/Needs/website": "r-dbi/DBItest, r-dbi/dbitemplate, adbi, AzureKusto, bigrquery, DatabaseConnector, dittodb, duckdb, implyr, lazysf, odbc, pool, RAthena, IMSMWU/RClickhouse, RH2, RJDBC, RMariaDB, RMySQL, RPostgres, RPostgreSQL, RPresto, RSQLite, sergeant, sparklyr, withr", + "Config/testthat/edition": "3", + "NeedsCompilation": "no", + "Author": "R Special Interest Group on Databases (R-SIG-DB) [aut], Hadley Wickham [aut], Kirill Müller [aut, cre] (), R Consortium [fnd]", + "Maintainer": "Kirill Müller ", + "Repository": "CRAN" }, "Deriv": { "Package": "Deriv", "Version": "4.2.0", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Symbolic Differentiation", + "Date": "2025-06-20", + "Authors@R": "c(person(given=\"Andrew\", family=\"Clausen\", role=\"aut\"), person(given=\"Serguei\", family=\"Sokol\", role=c(\"aut\", \"cre\"), email=\"sokol@insa-toulouse.fr\", comment = c(ORCID = \"0000-0002-5674-3327\")), person(given=\"Andreas\", family=\"Rappold\", role=\"ctb\", email=\"arappold@gmx.at\"))", + "Description": "R-based solution for symbolic differentiation. It admits user-defined function as well as function substitution in arguments of functions to be differentiated. Some symbolic simplification is part of the work.", + "License": "GPL (>= 3)", + "Suggests": [ + "testthat (>= 0.11.0)" + ], + "BugReports": "https://github.com/sgsokol/Deriv/issues", + "RoxygenNote": "7.3.1", + "Imports": [ "methods" - ] + ], + "Encoding": "UTF-8", + "NeedsCompilation": "no", + "Author": "Andrew Clausen [aut], Serguei Sokol [aut, cre] (ORCID: ), Andreas Rappold [ctb]", + "Maintainer": "Serguei Sokol ", + "Repository": "CRAN" }, "DoE.base": { "Package": "DoE.base", "Version": "1.2-5", "Source": "Repository", - "Requirements": [ - "combinat", - "conf.design", + "Title": "Full Factorials, Orthogonal Arrays and Base Utilities for DoE Packages", + "Depends": [ + "R (>= 2.10)", + "grid", + "conf.design" + ], + "Imports": [ + "stats", + "utils", "graphics", "grDevices", - "grid", - "lattice", + "vcd", + "combinat", "MASS", + "lattice", "numbers", - "partitions", - "R", - "stats", - "utils", - "vcd" - ] + "partitions" + ], + "Suggests": [ + "FrF2", + "DoE.wrapper", + "RColorBrewer" + ], + "Date": "2025-04-16", + "Authors@R": "c(person(\"Ulrike\", \"Groemping\", role = c(\"aut\", \"cre\"), email = \"ulrike.groemping@bht-berlin.de\"), person(\"Boyko\", \"Amarov\", role = \"ctb\"), person(\"Hongquan\", \"Xu\", role = \"ctb\"))", + "Description": "Creates full factorial experimental designs and designs based on orthogonal arrays for (industrial) experiments. Provides diverse quality criteria. Provides utility functions for the class design, which is also used by other packages for designed experiments.", + "License": "GPL (>= 2)", + "LazyLoad": "yes", + "LazyData": "yes", + "Encoding": "UTF-8", + "URL": "https://prof.bht-berlin.de/groemping/DoE/, https://prof.bht-berlin.de/groemping/", + "NeedsCompilation": "no", + "Author": "Ulrike Groemping [aut, cre], Boyko Amarov [ctb], Hongquan Xu [ctb]", + "Maintainer": "Ulrike Groemping ", + "Repository": "CRAN" }, "EnvStats": { "Package": "EnvStats", "Version": "3.1.0", "Source": "Repository", - "Requirements": [ - "ggplot2", + "Type": "Package", + "Title": "Package for Environmental Statistics, Including US EPA Guidance", + "Date": "2025-04-17", + "Authors@R": "c( person(\"Steven P.\",\"Millard\",email=\"EnvStats@ProbStatInfo.com\",role=c(\"aut\")), person(\"Alexander\", \"Kowarik\", email = \"alexander.kowarik@statistik.gv.at\", role = c(\"ctb\",\"cre\"), comment=c(ORCID=\"0000-0001-8598-4130\")))", + "Depends": [ + "R (>= 3.5.0)" + ], + "Imports": [ "MASS", - "nortest", - "R" - ] + "ggplot2", + "nortest" + ], + "Suggests": [ + "lattice", + "qcc", + "sp", + "boot", + "tinytest", + "covr", + "Hmisc" + ], + "Description": "Graphical and statistical analyses of environmental data, with focus on analyzing chemical concentrations and physical parameters, usually in the context of mandated environmental monitoring. Major environmental statistical methods found in the literature and regulatory guidance documents, with extensive help that explains what these methods do, how to use them, and where to find them in the literature. Numerous built-in data sets from regulatory guidance documents and environmental statistics literature. Includes scripts reproducing analyses presented in the book \"EnvStats: An R Package for Environmental Statistics\" (Millard, 2013, Springer, ISBN 978-1-4614-8455-4, ).", + "License": "GPL (>= 3)", + "URL": "https://github.com/alexkowa/EnvStats, https://alexkowa.github.io/EnvStats/", + "LazyLoad": "yes", + "LazyData": "yes", + "NeedsCompilation": "no", + "Author": "Steven P. Millard [aut], Alexander Kowarik [ctb, cre] ()", + "Maintainer": "Alexander Kowarik ", + "Repository": "CRAN" }, "FAdist": { "Package": "FAdist", "Version": "2.4", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Distributions that are Sometimes Used in Hydrology", + "Imports": [ "stats" - ] + ], + "Date": "2022-03-02", + "Author": "Francois Aucoin", + "Maintainer": "Thomas Petzoldt ", + "Description": "Probability distributions that are sometimes useful in hydrology.", + "License": "GPL-2", + "URL": "https://github.com/tpetzoldt/FAdist", + "Repository": "CRAN", + "NeedsCompilation": "no" }, "Formula": { "Package": "Formula", "Version": "1.2-5", "Source": "Repository", - "Requirements": [ - "R", + "Date": "2023-02-23", + "Title": "Extended Model Formulas", + "Description": "Infrastructure for extended formulas with multiple parts on the right-hand side and/or multiple responses on the left-hand side (see ).", + "Authors@R": "c(person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")), person(given = \"Yves\", family = \"Croissant\", role = \"aut\", email = \"Yves.Croissant@univ-reunion.fr\"))", + "Depends": [ + "R (>= 2.0.0)", "stats" - ] + ], + "License": "GPL-2 | GPL-3", + "NeedsCompilation": "no", + "Author": "Achim Zeileis [aut, cre] (), Yves Croissant [aut]", + "Maintainer": "Achim Zeileis ", + "Repository": "CRAN" }, "FrF2": { "Package": "FrF2", "Version": "2.3-4", "Source": "Repository", - "Requirements": [ - "DoE.base", - "igraph", - "methods", - "R", + "Title": "Fractional Factorial Designs with 2-Level Factors", + "Depends": [ + "R(>= 2.13.0)", + "DoE.base(>= 0.25)" + ], + "Imports": [ + "sfsmisc(>= 1.0-26)", + "utils", "scatterplot3d", - "sfsmisc", - "utils" - ] + "igraph(>= 0.7)", + "methods" + ], + "Suggests": [ + "FrF2.catlg128", + "BsMD", + "DoE.wrapper" + ], + "Date": "2025-04-16", + "Authors@R": "person(\"Ulrike\", \"Groemping\", role = c(\"aut\", \"cre\"), email = \"ulrike.groemping@bht-berlin.de\")", + "Description": "Regular and non-regular Fractional Factorial 2-level designs can be created. Furthermore, analysis tools for Fractional Factorial designs with 2-level factors are offered (main effects and interaction plots for all factors simultaneously, cube plot for looking at the simultaneous effects of three factors, full or half normal plot, alias structure in a more readable format than with the built-in function alias).", + "License": "GPL (>= 2)", + "LazyLoad": "yes", + "Encoding": "UTF-8", + "URL": "https://prof.bht-berlin.de/groemping/DoE/, https://prof.bht-berlin.de/groemping/", + "NeedsCompilation": "no", + "Author": "Ulrike Groemping [aut, cre]", + "Maintainer": "Ulrike Groemping ", + "Repository": "CRAN" }, "GPArotation": { "Package": "GPArotation", "Version": "2025.3-1", "Source": "Repository", - "Requirements": [ - "R", + "Title": "Gradient Projection Factor Rotation", + "Authors@R": "c( person(\"Coen\", \"Bernaards\", email = \"cab.gparotation@gmail.com\", role = c(\"aut\",\"cre\")), person(\"Paul\", \"Gilbert\", email = \"pgilbert.ttv9z@ncf.ca\", role = \"aut\"), person(\"Robert\", \"Jennrich\", role = \"aut\") )", + "Depends": [ + "R (>= 2.0.0)" + ], + "Description": "Gradient Projection Algorithms for Factor Rotation. For details see ?GPArotation. When using this package, please cite Bernaards and Jennrich (2005) 'Gradient Projection Algorithms and Software for Arbitrary Rotation Criteria in Factor Analysis'.", + "LazyData": "yes", + "Imports": [ "stats" - ] + ], + "License": "GPL (>= 2)", + "URL": "https://optimizer.r-forge.r-project.org/GPArotation_www/", + "NeedsCompilation": "no", + "Author": "Coen Bernaards [aut, cre], Paul Gilbert [aut], Robert Jennrich [aut]", + "Maintainer": "Coen Bernaards ", + "Repository": "CRAN" }, "Hmisc": { "Package": "Hmisc", "Version": "5.2-5", "Source": "Repository", - "Requirements": [ - "base64enc", + "Date": "2026-01-08", + "Title": "Harrell Miscellaneous", + "Authors@R": "c(person(given = \"Frank E\", family = \"Harrell Jr\", role = c(\"aut\", \"cre\"), email = \"fh@fharrell.com\", comment = c(ORCID = \"0000-0002-8271-5493\")), person(given = \"Cole\", family = \"Beck\", role = c(\"ctb\"), email = \"cole.beck@vumc.org\" ), person(given = \"Charles\", family = \"Dupont\", role = \"ctb\") )", + "Depends": [ + "R (>= 4.2.0)" + ], + "Imports": [ + "methods", + "ggplot2", "cluster", - "colorspace", - "data.table", + "rpart", + "nnet", "foreign", - "Formula", - "ggplot2", + "gtable", "grid", "gridExtra", - "gtable", - "htmlTable", + "data.table", + "htmlTable (>= 1.11.0)", + "viridisLite", "htmltools", - "knitr", - "methods", - "nnet", - "R", + "base64enc", + "colorspace", "rmarkdown", - "rpart", - "viridisLite" - ] + "knitr", + "Formula" + ], + "Suggests": [ + "survival", + "qreport", + "acepack", + "chron", + "rms", + "mice", + "rstudioapi", + "tables", + "plotly (>= 4.5.6)", + "rlang", + "VGAM", + "leaps", + "pcaPP", + "digest", + "parallel", + "polspline", + "abind", + "kableExtra", + "rio", + "lattice", + "latticeExtra", + "gt", + "sparkline", + "jsonlite", + "htmlwidgets", + "qs", + "getPass", + "keyring", + "safer", + "htm2txt", + "boot" + ], + "Description": "Contains many functions useful for data analysis, high-level graphics, utility operations, functions for computing sample size and power, simulation, importing and annotating datasets, imputing missing values, advanced table making, variable clustering, character string manipulation, conversion of R objects to LaTeX and html code, recoding variables, caching, simplified parallel computing, encrypting and decrypting data using a safe workflow, general moving window statistical estimation, and assistance in interpreting principal component analysis.", + "License": "GPL (>= 2)", + "LazyLoad": "Yes", + "URL": "https://hbiostat.org/R/Hmisc/", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "NeedsCompilation": "yes", + "Author": "Frank E Harrell Jr [aut, cre] (ORCID: ), Cole Beck [ctb], Charles Dupont [ctb]", + "Maintainer": "Frank E Harrell Jr ", + "Repository": "CRAN" }, "MASS": { "Package": "MASS", @@ -229,12 +487,31 @@ "Package": "MatrixModels", "Version": "0.5-4", "Source": "Repository", - "Requirements": [ - "Matrix", + "VersionNote": "Released 0.5-3 on 2023-11-06", + "Date": "2025-03-25", + "Title": "Modelling with Sparse and Dense Matrices", + "Contact": "Matrix-authors@R-project.org", + "Authors@R": "c( person(\"Douglas\", \"Bates\", role = \"aut\", email = \"bates@stat.wisc.edu\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = c(\"aut\", \"cre\"), email = \"mmaechler+Matrix@gmail.com\", comment = c(ORCID = \"0000-0002-8685-9910\")))", + "Description": "Generalized Linear Modelling with sparse and dense 'Matrix' matrices, using modular prediction and response module classes.", + "Depends": [ + "R (>= 3.6.0)" + ], + "Imports": [ + "stats", "methods", - "R", - "stats" - ] + "Matrix (>= 1.6-0)", + "Matrix(< 1.8-0)" + ], + "ImportsNote": "_not_yet_stats4", + "Encoding": "UTF-8", + "LazyLoad": "yes", + "License": "GPL (>= 2)", + "URL": "https://Matrix.R-forge.R-project.org/, https://r-forge.r-project.org/R/?group_id=61", + "BugReports": "https://R-forge.R-project.org/tracker/?func=add&atid=294&group_id=61", + "NeedsCompilation": "no", + "Author": "Douglas Bates [aut] (), Martin Maechler [aut, cre] ()", + "Maintainer": "Martin Maechler ", + "Repository": "CRAN" }, "R6": { "Package": "R6", @@ -279,6 +556,61 @@ "NeedsCompilation": "no", "Repository": "CRAN" }, + "RSQLite": { + "Package": "RSQLite", + "Version": "2.4.6", + "Source": "Repository", + "Title": "SQLite Interface for R", + "Date": "2026-02-05", + "Authors@R": "c( person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(c(\"David\", \"A.\"), \"James\", role = \"aut\"), person(\"Seth\", \"Falcon\", role = \"aut\"), person(\"D. 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System libraries will never be consulted because this package relies on static linking for the plugins it includes; this also ensures a consistent experience across all installations.", + "License": "LGPL (>= 2.1)", + "URL": "https://rsqlite.r-dbi.org, https://github.com/r-dbi/RSQLite", + "BugReports": "https://github.com/r-dbi/RSQLite/issues", + "Depends": [ + "R (>= 3.1.0)" + ], + "Imports": [ + "bit64", + "blob (>= 1.2.0)", + "DBI (>= 1.2.0)", + "memoise", + "methods", + "pkgconfig", + "rlang" + ], + "Suggests": [ + "callr", + "cli", + "DBItest (>= 1.8.0)", + "decor", + "gert", + "gh", + "hms", + "knitr", + "magrittr", + "rmarkdown", + "rvest", + "testthat (>= 3.0.0)", + "withr", + "xml2" + ], + "LinkingTo": [ + "cpp11 (>= 0.4.0)" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "r-dbi/dbitemplate", + "Config/autostyle/scope": "line_breaks", + "Config/autostyle/strict": "false", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3.9000", + "Collate": "'SQLiteConnection.R' 'SQLKeywords_SQLiteConnection.R' 'SQLiteDriver.R' 'SQLite.R' 'SQLiteResult.R' 'coerce.R' 'compatRowNames.R' 'copy.R' 'cpp11.R' 'datasetsDb.R' 'dbAppendTable_SQLiteConnection.R' 'dbBeginTransaction.R' 'dbBegin_SQLiteConnection.R' 'dbBind_SQLiteResult.R' 'dbClearResult_SQLiteResult.R' 'dbColumnInfo_SQLiteResult.R' 'dbCommit_SQLiteConnection.R' 'dbConnect_SQLiteConnection.R' 'dbConnect_SQLiteDriver.R' 'dbDataType_SQLiteConnection.R' 'dbDataType_SQLiteDriver.R' 'dbDisconnect_SQLiteConnection.R' 'dbExistsTable_SQLiteConnection_Id.R' 'dbExistsTable_SQLiteConnection_character.R' 'dbFetch_SQLiteResult.R' 'dbGetException_SQLiteConnection.R' 'dbGetInfo_SQLiteConnection.R' 'dbGetInfo_SQLiteDriver.R' 'dbGetPreparedQuery.R' 'dbGetPreparedQuery_SQLiteConnection_character_data.frame.R' 'dbGetRowCount_SQLiteResult.R' 'dbGetRowsAffected_SQLiteResult.R' 'dbGetStatement_SQLiteResult.R' 'dbHasCompleted_SQLiteResult.R' 'dbIsValid_SQLiteConnection.R' 'dbIsValid_SQLiteDriver.R' 'dbIsValid_SQLiteResult.R' 'dbListResults_SQLiteConnection.R' 'dbListTables_SQLiteConnection.R' 'dbQuoteIdentifier_SQLiteConnection_SQL.R' 'dbQuoteIdentifier_SQLiteConnection_character.R' 'dbReadTable_SQLiteConnection_character.R' 'dbRemoveTable_SQLiteConnection_character.R' 'dbRollback_SQLiteConnection.R' 'dbSendPreparedQuery.R' 'dbSendPreparedQuery_SQLiteConnection_character_data.frame.R' 'dbSendQuery_SQLiteConnection_character.R' 'dbUnloadDriver_SQLiteDriver.R' 'dbUnquoteIdentifier_SQLiteConnection_SQL.R' 'dbWriteTable_SQLiteConnection_character_character.R' 'dbWriteTable_SQLiteConnection_character_data.frame.R' 'db_bind.R' 'deprecated.R' 'export.R' 'fetch_SQLiteResult.R' 'import-standalone-check_suggested.R' 'import-standalone-purrr.R' 'initExtension.R' 'initRegExp.R' 'isSQLKeyword_SQLiteConnection_character.R' 'make.db.names_SQLiteConnection_character.R' 'pkgconfig.R' 'show_SQLiteConnection.R' 'sqlData_SQLiteConnection.R' 'table.R' 'transactions.R' 'utils.R' 'version.R' 'zzz.R'", + "NeedsCompilation": "yes", + "Author": "Kirill Müller [aut, cre] (ORCID: ), Hadley Wickham [aut], David A. James [aut], Seth Falcon [aut], D. Richard Hipp [ctb] (for the included SQLite sources), Dan Kennedy [ctb] (for the included SQLite sources), Joe Mistachkin [ctb] (for the included SQLite sources), SQLite Authors [ctb] (for the included SQLite sources), Liam Healy [ctb] (for the included SQLite sources), R Consortium [fnd], RStudio [cph]", + "Maintainer": "Kirill Müller ", + "Repository": "CRAN" + }, "Rcpp": { "Package": "Rcpp", "Version": "1.1.1", @@ -354,32 +686,97 @@ "Package": "RcppEigen", "Version": "0.3.4.0.2", "Source": "Repository", - "Requirements": [ - "R", - "Rcpp", - "stats", - "utils" - ] + "Type": "Package", + "Title": "'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library", + "Date": "2024-08-23", + "Authors@R": "c(person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Yixuan\", \"Qiu\", role = \"aut\", comment = c(ORCID = \"0000-0003-0109-6692\")), person(\"Authors of\", \"Eigen\", role = \"cph\", comment = \"Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS\"))", + "Copyright": "See the file COPYRIGHTS for various Eigen copyright details", + "Description": "R and 'Eigen' integration using 'Rcpp'. 'Eigen' is a C++ template library for linear algebra: matrices, vectors, numerical solvers and related algorithms. It supports dense and sparse matrices on integer, floating point and complex numbers, decompositions of such matrices, and solutions of linear systems. Its performance on many algorithms is comparable with some of the best implementations based on 'Lapack' and level-3 'BLAS'. The 'RcppEigen' package includes the header files from the 'Eigen' C++ template library. Thus users do not need to install 'Eigen' itself in order to use 'RcppEigen'. Since version 3.1.1, 'Eigen' is licensed under the Mozilla Public License (version 2); earlier version were licensed under the GNU LGPL version 3 or later. 'RcppEigen' (the 'Rcpp' bindings/bridge to 'Eigen') is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.", + "License": "GPL (>= 2) | file LICENSE", + "LazyLoad": "yes", + "Depends": [ + "R (>= 3.6.0)" + ], + "LinkingTo": [ + "Rcpp" + ], + "Imports": [ + "Rcpp (>= 0.11.0)", + "stats", + "utils" + ], + "Suggests": [ + "Matrix", + "inline", + "tinytest", + "pkgKitten", + "microbenchmark" + ], + "URL": "https://github.com/RcppCore/RcppEigen, https://dirk.eddelbuettel.com/code/rcpp.eigen.html", + "BugReports": "https://github.com/RcppCore/RcppEigen/issues", + "NeedsCompilation": "yes", + "Author": "Doug Bates [aut] (), Dirk Eddelbuettel [aut, cre] (), Romain Francois [aut] (), Yixuan Qiu [aut] (), Authors of Eigen [cph] (Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS)", + "Maintainer": "Dirk Eddelbuettel ", + "Repository": "CRAN" }, "Rdpack": { "Package": "Rdpack", "Version": "2.6.4", "Source": "Repository", - "Requirements": [ - "methods", - "R", - "rbibutils", + "Type": "Package", + "Title": "Update and Manipulate Rd Documentation Objects", + "Authors@R": "c( person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\", role = c(\"aut\", \"cre\"), email = \"georgi.boshnakov@manchester.ac.uk\", comment = c(ORCID = \"0000-0003-2839-346X\")), person(given = \"Duncan\", family = \"Murdoch\", role = \"ctb\", email = \"murdoch.duncan@gmail.com\") )", + "Description": "Functions for manipulation of R documentation objects, including functions reprompt() and ereprompt() for updating 'Rd' documentation for functions, methods and classes; 'Rd' macros for citations and import of references from 'bibtex' files for use in 'Rd' files and 'roxygen2' comments; 'Rd' macros for evaluating and inserting snippets of 'R' code and the results of its evaluation or creating graphics on the fly; and many functions for manipulation of references and Rd files.", + "URL": "https://geobosh.github.io/Rdpack/ (doc), https://github.com/GeoBosh/Rdpack (devel)", + "BugReports": "https://github.com/GeoBosh/Rdpack/issues", + "Depends": [ + "R (>= 2.15.0)", + "methods" + ], + "Imports": [ "tools", - "utils" - ] + "utils", + "rbibutils (>= 1.3)" + ], + "Suggests": [ + "grDevices", + "testthat", + "rstudioapi", + "rprojroot", + "gbRd" + ], + "License": "GPL (>= 2)", + "LazyLoad": "yes", + "RoxygenNote": "7.1.1", + "NeedsCompilation": "no", + "Author": "Georgi N. Boshnakov [aut, cre] (), Duncan Murdoch [ctb]", + "Maintainer": "Georgi N. Boshnakov ", + "Repository": "CRAN" }, "Rspc": { "Package": "Rspc", "Version": "1.2.2", "Source": "Repository", - "Requirements": [ - "R" - ] + "Type": "Package", + "Title": "Nelson Rules for Control Charts", + "Maintainer": "Stanislav Matousek (MSD) ", + "Description": "Implementation of Nelson rules for control charts in 'R'. The 'Rspc' implements some Statistical Process Control methods, namely Levey-Jennings type of I (individuals) chart, Shewhart C (count) chart and Nelson rules (as described in Montgomery, D. C. (2013) Introduction to statistical quality control. Hoboken, NJ: Wiley.). Typical workflow is taking the time series, specify the control limits, and list of Nelson rules you want to evaluate. There are several options how to modify the rules (one sided limits, numerical parameters of rules, etc.). Package is also capable of calculating the control limits from the data (so far only for i-chart and c-chart are implemented).", + "Authors@R": "c( person(\"Martin\", \"Vagenknecht (MSD)\", role = \"aut\"), person(\"Jindrich\", \"Soukup (MSD)\", role = \"aut\"), person(\"Stanislav\", \"Matousek (MSD)\", email = \"rspc@merck.com\", role = c(\"aut\", \"cre\")), person(\"Janet\", \"Alvarado (MSD)\", role = c(\"ctb\", \"rev\")), person(\"Merck Sharp & Dohme Corp. a subsidiary of Merck & Co., Inc., Kenilworth, NJ, USA\", role = \"cph\"))", + "BugReports": "https://github.com/Merck/SPC_Package/issues", + "Depends": [ + "R (>= 3.1.0)" + ], + "License": "GPL-3", + "Encoding": "UTF-8", + "LazyData": "true", + "RoxygenNote": "6.0.1", + "VignetteBuilder": "knitr", + "Suggests": [ + "knitr" + ], + "NeedsCompilation": "no", + "Author": "Martin Vagenknecht (MSD) [aut], Jindrich Soukup (MSD) [aut], Stanislav Matousek (MSD) [aut, cre], Janet Alvarado (MSD) [ctb, rev], Merck Sharp & Dohme Corp. a subsidiary of Merck & Co., Inc., Kenilworth, NJ, USA [cph]", + "Repository": "CRAN" }, "S7": { "Package": "S7", @@ -424,51 +821,177 @@ "Package": "SparseM", "Version": "1.84-2", "Source": "Repository", - "Requirements": [ + "Authors@R": "c( person(\"Roger\", \"Koenker\", role = c(\"cre\",\"aut\"), email = \"rkoenker@uiuc.edu\"), person(c(\"Pin\", \"Tian\"), \"Ng\", role = c(\"ctb\"), comment = \"Contributions to Sparse QR code\", email = \"pin.ng@nau.edu\") , person(\"Yousef\", \"Saad\", role = c(\"ctb\"), comment = \"author of sparskit2\") , person(\"Ben\", \"Shaby\", role = c(\"ctb\"), comment = \"author of chol2csr\") , person(\"Martin\", \"Maechler\", role = \"ctb\", comment = c(\"chol() tweaks; S4\", ORCID = \"0000-0002-8685-9910\")) )", + "Maintainer": "Roger Koenker ", + "Depends": [ + "R (>= 2.15)", + "methods" + ], + "Imports": [ "graphics", - "methods", - "R", "stats", "utils" - ] + ], + "VignetteBuilder": "knitr", + "Suggests": [ + "knitr" + ], + "Description": "Some basic linear algebra functionality for sparse matrices is provided: including Cholesky decomposition and backsolving as well as standard R subsetting and Kronecker products.", + "License": "GPL (>= 2)", + "Title": "Sparse Linear Algebra", + "URL": "http://www.econ.uiuc.edu/~roger/research/sparse/sparse.html", + "NeedsCompilation": "yes", + "Author": "Roger Koenker [cre, aut], Pin Tian Ng [ctb] (Contributions to Sparse QR code), Yousef Saad [ctb] (author of sparskit2), Ben Shaby [ctb] (author of chol2csr), Martin Maechler [ctb] (chol() tweaks; S4, )", + "Repository": "CRAN" }, "TH.data": { "Package": "TH.data", "Version": "1.1-5", "Source": "Repository", - "Requirements": [ - "MASS", - "R", - "survival" - ] + "Title": "TH's Data Archive", + "Date": "2025-11-17", + "Authors@R": "c(person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\"))", + "Description": "Contains data sets used in other packages Torsten Hothorn maintains.", + "Depends": [ + "R (>= 3.5.0)", + "survival", + "MASS" + ], + "Suggests": [ + "trtf", + "tram", + "rms", + "coin", + "ATR", + "multcomp", + "gridExtra", + "vcd", + "colorspace", + "lattice", + "knitr", + "dplyr", + "openxlsx", + "plyr" + ], + "LazyData": "yes", + "VignetteBuilder": "knitr", + "License": "GPL-3", + "NeedsCompilation": "no", + "Author": "Torsten Hothorn [aut, cre]", + "Maintainer": "Torsten Hothorn ", + "Repository": "CRAN" }, "TTR": { "Package": "TTR", "Version": "0.24.4", "Source": "Repository", - "Requirements": [ - "curl", - "xts", - "zoo" - ] + "Type": "Package", + "Title": "Technical Trading Rules", + "Authors@R": "c( person(given=\"Joshua\", family=\"Ulrich\", role=c(\"cre\",\"aut\"), email=\"josh.m.ulrich@gmail.com\"), person(given=c(\"Ethan\",\"B.\"), family=\"Smith\", role=\"ctb\") )", + "Imports": [ + "xts (>= 0.10-0)", + "zoo", + "curl" + ], + "LinkingTo": [ + "xts" + ], + "Enhances": [ + "quantmod" + ], + "Suggests": [ + "RUnit" + ], + "Description": "A collection of over 50 technical indicators for creating technical trading rules. The package also provides fast implementations of common rolling-window functions, and several volatility calculations.", + "License": "GPL (>= 2)", + "URL": "https://github.com/joshuaulrich/TTR", + "BugReports": "https://github.com/joshuaulrich/TTR/issues", + "NeedsCompilation": "yes", + "Author": "Joshua Ulrich [cre, aut], Ethan B. Smith [ctb]", + "Maintainer": "Joshua Ulrich ", + "Repository": "CRAN" }, "abind": { "Package": "abind", "Version": "1.4-8", "Source": "Repository", - "Requirements": [ + "Date": "2024-09-08", + "Title": "Combine Multidimensional Arrays", + "Authors@R": "c(person(\"Tony\", \"Plate\", email = \"tplate@acm.org\", role = c(\"aut\", \"cre\")), person(\"Richard\", \"Heiberger\", role = c(\"aut\")))", + "Maintainer": "Tony Plate ", + "Description": "Combine multidimensional arrays into a single array. This is a generalization of 'cbind' and 'rbind'. Works with vectors, matrices, and higher-dimensional arrays (aka tensors). Also provides functions 'adrop', 'asub', and 'afill' for manipulating, extracting and replacing data in arrays.", + "Depends": [ + "R (>= 1.5.0)" + ], + "Imports": [ "methods", - "R", "utils" - ] + ], + "License": "MIT + file LICENSE", + "NeedsCompilation": "no", + "Author": "Tony Plate [aut, cre], Richard Heiberger [aut]", + "Repository": "CRAN" + }, + "archive": { + "Package": "archive", + "Version": "1.1.12.1", + "Source": "Repository", + "Title": "Multi-Format Archive and Compression Support", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Ondrej\", \"Holy\", role = \"cph\", comment = \"archive_write_add_filter implementation\"), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", + "Description": "Bindings to 'libarchive' the Multi-format archive and compression library. Offers R connections and direct extraction for many archive formats including 'tar', 'ZIP', '7-zip', 'RAR', 'CAB' and compression formats including 'gzip', 'bzip2', 'compress', 'lzma' and 'xz'.", + "License": "MIT + file LICENSE", + "URL": "https://archive.r-lib.org/, https://github.com/r-lib/archive", + "BugReports": "https://github.com/r-lib/archive/issues", + "Depends": [ + "R (>= 3.6.0)" + ], + "Imports": [ + "cli", + "glue", + "rlang", + "tibble" + ], + "Suggests": [ + "covr", + "testthat" + ], + "LinkingTo": [ + "cli" + ], + "ByteCompile": "true", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.1.9000", + "SystemRequirements": "libarchive: libarchive-dev (deb), libarchive-devel (rpm), libarchive (homebrew), libarchive_dev (csw)", + "Biarch": "true", + "NeedsCompilation": "yes", + "Author": "Jim Hester [aut] (ORCID: ), Gábor Csárdi [aut, cre], Ondrej Holy [cph] (archive_write_add_filter implementation), RStudio [cph, fnd]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" }, "askpass": { "Package": "askpass", "Version": "1.2.1", "Source": "Repository", - "Requirements": [ - "sys" - ] + "Type": "Package", + "Title": "Password Entry Utilities for R, Git, and SSH", + "Authors@R": "person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\"))", + "Description": "Cross-platform utilities for prompting the user for credentials or a passphrase, for example to authenticate with a server or read a protected key. Includes native programs for MacOS and Windows, hence no 'tcltk' is required. Password entry can be invoked in two different ways: directly from R via the askpass() function, or indirectly as password-entry back-end for 'ssh-agent' or 'git-credential' via the SSH_ASKPASS and GIT_ASKPASS environment variables. Thereby the user can be prompted for credentials or a passphrase if needed when R calls out to git or ssh.", + "License": "MIT + file LICENSE", + "URL": "https://r-lib.r-universe.dev/askpass", + "BugReports": "https://github.com/r-lib/askpass/issues", + "Encoding": "UTF-8", + "Imports": [ + "sys (>= 2.1)" + ], + "RoxygenNote": "7.2.3", + "Suggests": [ + "testthat" + ], + "Language": "en-US", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] ()", + "Maintainer": "Jeroen Ooms ", + "Repository": "CRAN" }, "assertthat": { "Package": "assertthat", @@ -496,17 +1019,42 @@ "Package": "backports", "Version": "1.5.0", "Source": "Repository", - "Requirements": [ - "R" - ] + "Type": "Package", + "Title": "Reimplementations of Functions Introduced Since R-3.0.0", + "Authors@R": "c( person(\"Michel\", \"Lang\", NULL, \"michellang@gmail.com\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Duncan\", \"Murdoch\", NULL, \"murdoch.duncan@gmail.com\", role = c(\"aut\")), person(\"R Core Team\", role = \"aut\"))", + "Maintainer": "Michel Lang ", + "Description": "Functions introduced or changed since R v3.0.0 are re-implemented in this package. The backports are conditionally exported in order to let R resolve the function name to either the implemented backport, or the respective base version, if available. Package developers can make use of new functions or arguments by selectively importing specific backports to support older installations.", + "URL": "https://github.com/r-lib/backports", + "BugReports": "https://github.com/r-lib/backports/issues", + "License": "GPL-2 | GPL-3", + "NeedsCompilation": "yes", + "ByteCompile": "yes", + "Depends": [ + "R (>= 3.0.0)" + ], + "Encoding": "UTF-8", + "RoxygenNote": "7.3.1", + "Author": "Michel Lang [cre, aut] (), Duncan Murdoch [aut], R Core Team [aut]", + "Repository": "CRAN" }, "base64enc": { "Package": "base64enc", "Version": "0.1-3", "Source": "Repository", - "Requirements": [ - "R" - ] + "Title": "Tools for base64 encoding", + "Author": "Simon Urbanek ", + "Maintainer": "Simon Urbanek ", + "Depends": [ + "R (>= 2.9.0)" + ], + "Enhances": [ + "png" + ], + "Description": "This package provides tools for handling base64 encoding. 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These are useful for handling database keys and exact counting in +-2^63. WARNING: do not use them as replacement for 32bit integers, integer64 are not supported for subscripting by R-core and they have different semantics when combined with double, e.g. integer64 + double => integer64. Class integer64 can be used in vectors, matrices, arrays and data.frames. Methods are available for coercion from and to logicals, integers, doubles, characters and factors as well as many elementwise and summary functions. Many fast algorithmic operations such as 'match' and 'order' support inter- active data exploration and manipulation and optionally leverage caching.", + "License": "GPL-2 | GPL-3", + "LazyLoad": "yes", + "ByteCompile": "yes", + "URL": "https://github.com/r-lib/bit64", + "Encoding": "UTF-8", + "Imports": [ + "graphics", + "methods", "stats", "utils" - ] + ], + "Suggests": [ + "testthat (>= 3.0.3)", + "withr" + ], + "Config/testthat/edition": "3", + "Config/needs/development": "testthat", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "yes", + "Author": "Michael Chirico [aut, cre], Jens Oehlschlägel [aut], Leonardo Silvestri [ctb], Ofek Shilon [ctb]", + "Maintainer": "Michael Chirico ", + "Repository": "CRAN" + }, + "blob": { + "Package": "blob", + "Version": "1.3.0", + "Source": "Repository", + "Title": "A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS')", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = \"cre\"), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", + "Description": "R's raw vector is useful for storing a single binary object. What if you want to put a vector of them in a data frame? The 'blob' package provides the blob object, a list of raw vectors, suitable for use as a column in data frame.", + "License": "MIT + file LICENSE", + "URL": "https://blob.tidyverse.org, https://github.com/tidyverse/blob", + "BugReports": "https://github.com/tidyverse/blob/issues", + "Imports": [ + "methods", + "rlang", + "vctrs (>= 0.2.1)" + ], + "Suggests": [ + "covr", + "crayon", + "pillar (>= 1.2.1)", + "testthat (>= 3.0.0)" + ], + "Config/autostyle/scope": "line_breaks", + "Config/autostyle/strict": "false", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3.9000", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut], Kirill Müller [cre], RStudio [cph, fnd]", + "Maintainer": "Kirill Müller ", + "Repository": "CRAN" }, "boot": { "Package": "boot", "Version": "1.3-32", "Source": "Repository", - "Requirements": [ - "R", + "Priority": "recommended", + "Date": "2025-08-29", + "Authors@R": "c(person(\"Angelo\", \"Canty\", role = \"aut\", email = \"cantya@mcmaster.ca\", comment = \"author of original code for S\"), person(\"Brian\", \"Ripley\", role = c(\"aut\", \"trl\"), email = \"Brian.Ripley@R-project.org\", comment = \"conversion to R, maintainer 1999--2022, author of parallel support\"), person(\"Alessandra R.\", \"Brazzale\", role = c(\"ctb\", \"cre\"), email = \"brazzale@stat.unipd.it\", comment = \"minor bug fixes\"))", + "Maintainer": "Alessandra R. Brazzale ", + "Note": "Maintainers are not available to give advice on using a package they did not author.", + "Description": "Functions and datasets for bootstrapping from the book \"Bootstrap Methods and Their Application\" by A. C. Davison and D. V. Hinkley (1997, CUP), originally written by Angelo Canty for S.", + "Title": "Bootstrap Functions", + "Depends": [ + "R (>= 3.0.0)", "graphics", "stats" - ] + ], + "Suggests": [ + "MASS", + "survival" + ], + "LazyData": "yes", + "ByteCompile": "yes", + "License": "Unlimited", + "NeedsCompilation": "no", + "Author": "Angelo Canty [aut] (author of original code for S), Brian Ripley [aut, trl] (conversion to R, maintainer 1999--2022, author of parallel support), Alessandra R. 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person(\"Bernie\", \"Gray\", , \"bfgray3@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-9190-6032\")), person(\"Mara\", \"Averick\", , \"mara@posit.co\", role = \"ctb\"), person(\"Aaron\", \"Jacobs\", , \"atheriel@gmail.com\", role = \"ctb\"), person(\"Andreas\", \"Bender\", , \"bender.at.R@gmail.com\", role = \"ctb\"), person(\"Sven\", \"Templer\", , \"sven.templer@gmail.com\", role = \"ctb\"), person(\"Paul-Christian\", \"Buerkner\", , \"paul.buerkner@gmail.com\", role = \"ctb\"), person(\"Matthew\", \"Kay\", , \"mjskay@umich.edu\", role = \"ctb\"), person(\"Erwan\", \"Le Pennec\", , \"lepennec@gmail.com\", role = \"ctb\"), person(\"Johan\", \"Junkka\", , \"johan.junkka@umu.se\", role = \"ctb\"), person(\"Hao\", \"Zhu\", , \"haozhu233@gmail.com\", role = \"ctb\"), person(\"Benjamin\", \"Soltoff\", , \"soltoffbc@uchicago.edu\", role = \"ctb\"), person(\"Zoe\", \"Wilkinson Saldana\", , \"zoewsaldana@gmail.com\", role = \"ctb\"), person(\"Tyler\", \"Littlefield\", , 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person(\"Greg\", \"Macfarlane\", , \"gregmacfarlane@gmail.com\", role = \"ctb\"), person(\"Brian\", \"Mannakee\", , \"bmannakee@gmail.com\", role = \"ctb\"), person(\"Drew\", \"Tyre\", , \"atyre2@unl.edu\", role = \"ctb\"), person(\"Shreyas\", \"Singh\", , \"shreyas.singh.298@gmail.com\", role = \"ctb\"), person(\"Laurens\", \"Geffert\", , \"laurensgeffert@gmail.com\", role = \"ctb\"), person(\"Hong\", \"Ooi\", , \"hongooi@microsoft.com\", role = \"ctb\"), person(\"Henrik\", \"Bengtsson\", , \"henrikb@braju.com\", role = \"ctb\"), person(\"Eduard\", \"Szocs\", , \"eduardszoecs@gmail.com\", role = \"ctb\"), person(\"David\", \"Hugh-Jones\", , \"davidhughjones@gmail.com\", role = \"ctb\"), person(\"Matthieu\", \"Stigler\", , \"Matthieu.Stigler@gmail.com\", role = \"ctb\"), person(\"Hugo\", \"Tavares\", , \"hm533@cam.ac.uk\", role = \"ctb\", comment = c(ORCID = \"0000-0001-9373-2726\")), person(\"R. Willem\", \"Vervoort\", , \"Willemvervoort@gmail.com\", role = \"ctb\"), person(\"Brenton M.\", \"Wiernik\", , \"brenton@wiernik.org\", role = \"ctb\"), person(\"Josh\", \"Yamamoto\", , \"joshuayamamoto5@gmail.com\", role = \"ctb\"), person(\"Jasme\", \"Lee\", role = \"ctb\"), person(\"Taren\", \"Sanders\", , \"taren.sanders@acu.edu.au\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4504-6008\")), person(\"Ilaria\", \"Prosdocimi\", , \"prosdocimi.ilaria@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-8565-094X\")), person(\"Daniel D.\", \"Sjoberg\", , \"danield.sjoberg@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0862-2018\")), person(\"Alex\", \"Reinhart\", , \"areinhar@stat.cmu.edu\", role = \"ctb\", comment = c(ORCID = \"0000-0002-6658-514X\")) )", + "Description": "Summarizes key information about statistical objects in tidy tibbles. This makes it easy to report results, create plots and consistently work with large numbers of models at once. Broom provides three verbs that each provide different types of information about a model. tidy() summarizes information about model components such as coefficients of a regression. glance() reports information about an entire model, such as goodness of fit measures like AIC and BIC. augment() adds information about individual observations to a dataset, such as fitted values or influence measures.", + "License": "MIT + file LICENSE", + "URL": "https://broom.tidymodels.org/, https://github.com/tidymodels/broom", + "BugReports": "https://github.com/tidymodels/broom/issues", + "Depends": [ + "R (>= 4.1)" + ], + "Imports": [ + "backports", + "cli", + "dplyr (>= 1.0.0)", + "generics (>= 0.0.2)", + "glue", + "lifecycle", + "purrr", + "rlang (>= 1.1.0)", "stringr", - "tibble", - "tidyr" - ] + "tibble (>= 3.0.0)", + "tidyr (>= 1.0.0)" + ], + "Suggests": [ + "AER", + "AUC", + "bbmle", + "betareg (>= 3.2-1)", + "biglm", + "binGroup", + "boot", + "btergm (>= 1.10.6)", + "car (>= 3.1-2)", + "carData", + "caret", + "cluster", + "cmprsk", + "coda", + "covr", + "drc", + "e1071", + "emmeans", + "epiR (>= 2.0.85)", + "ergm (>= 3.10.4)", + "fixest (>= 0.9.0)", + "gam (>= 1.15)", + "gee", + "geepack", + "ggplot2", + "glmnet", + "glmnetUtils", + "gmm", + "Hmisc", + "interp", + "irlba", + "joineRML", + "Kendall", + "knitr", + "ks", + "Lahman", + "lavaan (>= 0.6.18)", + "leaps", + "lfe", + "lm.beta", + "lme4", + "lmodel2", + "lmtest (>= 0.9.38)", + "lsmeans", + "maps", + "margins", + "MASS", + "mclust", + "mediation", + "metafor", + "mfx", + "mgcv", + "mlogit", + "modeldata", + "modeltests (>= 0.1.6)", + "muhaz", + "multcomp", + "network", + "nnet", + "ordinal", + "plm", + "poLCA", + "psych", + "quantreg", + "rmarkdown", + "robust", + "robustbase", + "rsample", + "sandwich", + "spatialreg", + "spdep (>= 1.1)", + "speedglm", + "spelling", + "stats4", + "survey", + "survival (>= 3.6-4)", + "systemfit", + "testthat (>= 3.0.0)", + "tseries", + "vars", + "zoo" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-25", + "Encoding": "UTF-8", + "Language": "en-US", + "RoxygenNote": "7.3.3", + "Collate": "'aaa-documentation-helper.R' 'null-and-default.R' 'aer.R' 'auc.R' 'base.R' 'bbmle.R' 'betareg.R' 'biglm.R' 'bingroup.R' 'boot.R' 'broom-package.R' 'broom.R' 'btergm.R' 'car.R' 'caret.R' 'cluster.R' 'cmprsk.R' 'data-frame.R' 'deprecated-0-7-0.R' 'drc.R' 'emmeans.R' 'epiR.R' 'ergm.R' 'fixest.R' 'gam.R' 'geepack.R' 'glmnet-cv-glmnet.R' 'glmnet-glmnet.R' 'gmm.R' 'hmisc.R' 'import-standalone-obj-type.R' 'import-standalone-types-check.R' 'joinerml.R' 'kendall.R' 'ks.R' 'lavaan.R' 'leaps.R' 'lfe.R' 'list-irlba.R' 'list-optim.R' 'list-svd.R' 'list-xyz.R' 'list.R' 'lm-beta.R' 'lmodel2.R' 'lmtest.R' 'maps.R' 'margins.R' 'mass-fitdistr.R' 'mass-negbin.R' 'mass-polr.R' 'mass-ridgelm.R' 'stats-lm.R' 'mass-rlm.R' 'mclust.R' 'mediation.R' 'metafor.R' 'mfx.R' 'mgcv.R' 'mlogit.R' 'muhaz.R' 'multcomp.R' 'nnet.R' 'nobs.R' 'ordinal-clm.R' 'ordinal-clmm.R' 'plm.R' 'polca.R' 'psych.R' 'stats-nls.R' 'quantreg-nlrq.R' 'quantreg-rq.R' 'quantreg-rqs.R' 'robust-glmrob.R' 'robust-lmrob.R' 'robustbase-glmrob.R' 'robustbase-lmrob.R' 'sp.R' 'spdep.R' 'speedglm-speedglm.R' 'speedglm-speedlm.R' 'stats-anova.R' 'stats-arima.R' 'stats-decompose.R' 'stats-factanal.R' 'stats-glm.R' 'stats-htest.R' 'stats-kmeans.R' 'stats-loess.R' 'stats-mlm.R' 'stats-prcomp.R' 'stats-smooth.spline.R' 'stats-summary-lm.R' 'stats-time-series.R' 'survey.R' 'survival-aareg.R' 'survival-cch.R' 'survival-coxph.R' 'survival-pyears.R' 'survival-survdiff.R' 'survival-survexp.R' 'survival-survfit.R' 'survival-survreg.R' 'systemfit.R' 'tseries.R' 'utilities.R' 'vars.R' 'zoo.R' 'zzz.R'", + "NeedsCompilation": "no", + "Author": "David Robinson [aut], Alex Hayes [aut] (ORCID: ), Simon Couch [aut] (ORCID: ), Emil Hvitfeldt [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: ), Indrajeet Patil [ctb] (ORCID: ), Derek Chiu [ctb], Matthieu Gomez [ctb], Boris Demeshev [ctb], Dieter Menne [ctb], Benjamin Nutter [ctb], Luke Johnston [ctb], Ben Bolker [ctb], Francois Briatte [ctb], Jeffrey Arnold [ctb], Jonah Gabry [ctb], Luciano Selzer [ctb], Gavin Simpson [ctb], Jens Preussner [ctb], Jay Hesselberth [ctb], Hadley Wickham [ctb], Matthew Lincoln [ctb], Alessandro Gasparini [ctb], Lukasz Komsta [ctb], Frederick Novometsky [ctb], Wilson Freitas [ctb], Michelle Evans [ctb], Jason Cory Brunson [ctb], Simon Jackson [ctb], Ben Whalley [ctb], Karissa Whiting [ctb], Yves Rosseel [ctb], Michael Kuehn [ctb], Jorge Cimentada [ctb], Erle Holgersen [ctb], Karl Dunkle Werner [ctb] (ORCID: ), Ethan Christensen [ctb], Steven Pav [ctb], Paul PJ [ctb], Ben Schneider [ctb], Patrick Kennedy [ctb], Lily Medina [ctb], Brian Fannin [ctb], Jason Muhlenkamp [ctb], Matt Lehman [ctb], Bill Denney [ctb] (ORCID: ), Nic Crane [ctb], Andrew Bates [ctb], Vincent Arel-Bundock [ctb] (ORCID: ), Hideaki Hayashi [ctb], Luis Tobalina [ctb], Annie Wang [ctb], Wei Yang Tham [ctb], Clara Wang [ctb], Abby Smith [ctb] (ORCID: ), Jasper Cooper [ctb] (ORCID: ), E Auden Krauska [ctb] (ORCID: ), Alex Wang [ctb], Malcolm Barrett [ctb] (ORCID: ), Charles Gray [ctb] (ORCID: ), Jared Wilber [ctb], Vilmantas Gegzna [ctb] (ORCID: ), Eduard Szoecs [ctb], Frederik Aust [ctb] (ORCID: ), Angus Moore [ctb], Nick Williams [ctb], Marius Barth [ctb] (ORCID: ), Bruna Wundervald [ctb] (ORCID: ), Joyce Cahoon [ctb] (ORCID: ), Grant McDermott [ctb] (ORCID: ), Kevin Zarca [ctb], Shiro Kuriwaki [ctb] (ORCID: ), Lukas Wallrich [ctb] (ORCID: ), James Martherus [ctb] (ORCID: ), Chuliang Xiao [ctb] (ORCID: ), Joseph Larmarange [ctb], Max Kuhn [ctb], Michal Bojanowski [ctb], Hakon Malmedal [ctb], Clara Wang [ctb], Sergio Oller [ctb], Luke Sonnet [ctb], Jim Hester [ctb], Ben Schneider [ctb], Bernie Gray [ctb] (ORCID: ), Mara Averick [ctb], Aaron Jacobs [ctb], Andreas Bender [ctb], Sven Templer [ctb], Paul-Christian Buerkner [ctb], Matthew Kay [ctb], Erwan Le Pennec [ctb], Johan Junkka [ctb], Hao Zhu [ctb], Benjamin Soltoff [ctb], Zoe Wilkinson Saldana [ctb], Tyler Littlefield [ctb], Charles T. Gray [ctb], Shabbh E. Banks [ctb], Serina Robinson [ctb], Roger Bivand [ctb], Riinu Ots [ctb], Nicholas Williams [ctb], Nina Jakobsen [ctb], Michael Weylandt [ctb], Lisa Lendway [ctb], Karl Hailperin [ctb], Josue Rodriguez [ctb], Jenny Bryan [ctb], Chris Jarvis [ctb], Greg Macfarlane [ctb], Brian Mannakee [ctb], Drew Tyre [ctb], Shreyas Singh [ctb], Laurens Geffert [ctb], Hong Ooi [ctb], Henrik Bengtsson [ctb], Eduard Szocs [ctb], David Hugh-Jones [ctb], Matthieu Stigler [ctb], Hugo Tavares [ctb] (ORCID: ), R. Willem Vervoort [ctb], Brenton M. Wiernik [ctb], Josh Yamamoto [ctb], Jasme Lee [ctb], Taren Sanders [ctb] (ORCID: ), Ilaria Prosdocimi [ctb] (ORCID: ), Daniel D. Sjoberg [ctb] (ORCID: ), Alex Reinhart [ctb] (ORCID: )", + "Maintainer": "Emil Hvitfeldt ", + "Repository": "CRAN" }, "bslib": { "Package": "bslib", "Version": "0.9.0", "Source": "Repository", - "Requirements": [ + "Title": "Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'", + "Authors@R": "c( person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Garrick\", \"Aden-Buie\", , \"garrick@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-7111-0077\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(, \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Javi\", \"Aguilar\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap colorpicker library\"), person(\"Thomas\", \"Park\", role = c(\"ctb\", \"cph\"), comment = \"Bootswatch library\"), person(, \"PayPal\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap accessibility plugin\") )", + "Description": "Simplifies custom 'CSS' styling of both 'shiny' and 'rmarkdown' via 'Bootstrap' 'Sass'. Supports 'Bootstrap' 3, 4 and 5 as well as their various 'Bootswatch' themes. 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Fox and S. 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Qualitative, sequential, and diverging color palettes based on HCL colors are provided along with corresponding ggplot2 color scales. Color palette choice is aided by an interactive app (with either a Tcl/Tk or a shiny graphical user interface) and shiny apps with an HCL color picker and a color vision deficiency emulator. Plotting functions for displaying and assessing palettes include color swatches, visualizations of the HCL space, and trajectories in HCL and/or RGB spectrum. Color manipulation functions include: desaturation, lightening/darkening, mixing, and simulation of color vision deficiencies (deutanomaly, protanomaly, tritanomaly). Details can be found on the project web page at and in the accompanying scientific paper: Zeileis et al. (2020, Journal of Statistical Software, ).", + "Depends": [ + "R (>= 3.0.0)", + "methods" + ], + "Imports": [ "graphics", "grDevices", - "methods", - "R", "stats" - ] + ], + "Suggests": [ + "datasets", + "utils", + "KernSmooth", + "MASS", + "kernlab", + "mvtnorm", + "vcd", + "tcltk", + "shiny", + "shinyjs", + "ggplot2", + "dplyr", + "scales", + "grid", + "png", + "jpeg", + "knitr", + "rmarkdown", + "RColorBrewer", + "rcartocolor", + "scico", + "viridis", + "wesanderson" + ], + "VignetteBuilder": "knitr", + "License": "BSD_3_clause + file LICENSE", + "URL": "https://colorspace.R-Forge.R-project.org/, https://hclwizard.org/", + "BugReports": "https://colorspace.R-Forge.R-project.org/contact.html", + "LazyData": "yes", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "yes", + "Author": "Ross Ihaka [aut], Paul Murrell [aut] (ORCID: ), Kurt Hornik [aut] (ORCID: ), Jason C. Fisher [aut] (ORCID: ), Reto Stauffer [aut] (ORCID: ), Claus O. Wilke [aut] (ORCID: ), Claire D. McWhite [aut] (ORCID: ), Achim Zeileis [aut, cre] (ORCID: )", + "Maintainer": "Achim Zeileis ", + "Repository": "CRAN" }, "combinat": { "Package": "combinat", "Version": "0.0-8", "Source": "Repository", - "Requirements": [] + "Title": "combinatorics utilities", + "Author": "Scott Chasalow", + "Maintainer": "Vince Carey ", + "Description": "routines for combinatorics", + "License": "GPL-2", + "Repository": "CRAN" }, "commonmark": { "Package": "commonmark", "Version": "2.0.0", "Source": "Repository", - "Requirements": [] + "Type": "Package", + "Title": "High Performance CommonMark and Github Markdown Rendering in R", + "Authors@R": "c( person(\"Jeroen\", \"Ooms\", ,\"jeroenooms@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"John MacFarlane\", role = \"cph\", comment = \"Author of cmark\"))", + "Description": "The CommonMark specification defines a rationalized version of markdown syntax. 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Also includes opt-in support for GFM extensions including tables, autolinks, and strikethrough text.", + "License": "BSD_2_clause + file LICENSE", + "URL": "https://docs.ropensci.org/commonmark/ https://ropensci.r-universe.dev/commonmark", + "BugReports": "https://github.com/r-lib/commonmark/issues", + "Suggests": [ + "curl", + "testthat", + "xml2" + ], + "RoxygenNote": "7.3.2", + "Language": "en-US", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] (ORCID: ), John MacFarlane [cph] (Author of cmark)", + "Maintainer": "Jeroen Ooms ", + "Repository": "CRAN" }, "conf.design": { "Package": "conf.design", "Version": "2.0.0", "Source": "Repository", - "Requirements": [] + "Type": "Package", + "Title": "Construction of factorial designs", + "Date": "2013-02-22", + "Suggests": [ + "stats", + "utils" + ], + "Author": "Bill Venables", + "Maintainer": "Bill Venables ", + "Description": "This small library contains a series of simple tools for constructing and manipulating confounded and fractional factorial designs.", + "License": "GPL-2", + "NeedsCompilation": "no", + "Repository": "CRAN" }, "contfrac": { "Package": "contfrac", "Version": "1.1-12", "Source": "Repository", - "Requirements": [] + "Title": "Continued Fractions", + "Author": "Robin K. S. Hankin", + "Description": "Various utilities for evaluating continued fractions.", + "Maintainer": "Robin K. S. 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The package was originally written for internal use in the Wilke lab, hence the name (Claus O. Wilke's plot package). It has also been used extensively in the book Fundamentals of Data Visualization.", + "URL": "https://wilkelab.org/cowplot/", + "BugReports": "https://github.com/wilkelab/cowplot/issues", + "Depends": [ + "R (>= 3.5.0)" + ], + "Imports": [ + "ggplot2 (>= 3.5.2)", "grid", "gtable", + "grDevices", "methods", - "R", "rlang", "scales" - ] + ], + "License": "GPL-2", + "Suggests": [ + "Cairo", + "covr", + "dplyr", + "forcats", + "gridGraphics (>= 0.4-0)", + "knitr", + "lattice", + "magick", + "maps", + "PASWR", + "patchwork", + "rmarkdown", + "ragg", + "testthat (>= 1.0.0)", + "tidyr", + "vdiffr (>= 0.3.0)", + "VennDiagram" + ], + "VignetteBuilder": "knitr", + "Collate": "'add_sub.R' 'align_plots.R' 'as_grob.R' 'as_gtable.R' 'axis_canvas.R' 'cowplot.R' 'draw.R' 'get_plot_component.R' 'get_axes.R' 'get_titles.R' 'get_legend.R' 'get_panel.R' 'gtable.R' 'key_glyph.R' 'plot_grid.R' 'save.R' 'set_null_device.R' 'setup.R' 'stamp.R' 'themes.R' 'utils_ggplot2.R'", + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "NeedsCompilation": "no", + "Author": "Claus O. Wilke [aut, cre] (ORCID: )", + "Maintainer": "Claus O. Wilke ", + "Repository": "CRAN" }, "cpp11": { "Package": "cpp11", @@ -892,37 +2081,130 @@ "Maintainer": "Davis Vaughan ", "Repository": "CRAN" }, + "crayon": { + "Package": "crayon", + "Version": "1.5.3", + "Source": "Repository", + "Title": "Colored Terminal Output", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Brodie\", \"Gaslam\", , \"brodie.gaslam@yahoo.com\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "The crayon package is now superseded. Please use the 'cli' package for new projects. Colored terminal output on terminals that support 'ANSI' color and highlight codes. It also works in 'Emacs' 'ESS'. 'ANSI' color support is automatically detected. Colors and highlighting can be combined and nested. New styles can also be created easily. This package was inspired by the 'chalk' 'JavaScript' project.", + "License": "MIT + file LICENSE", + "URL": "https://r-lib.github.io/crayon/, https://github.com/r-lib/crayon", + "BugReports": "https://github.com/r-lib/crayon/issues", + "Imports": [ + "grDevices", + "methods", + "utils" + ], + "Suggests": [ + "mockery", + "rstudioapi", + "testthat", + "withr" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.1", + "Collate": "'aaa-rstudio-detect.R' 'aaaa-rematch2.R' 'aab-num-ansi-colors.R' 'aac-num-ansi-colors.R' 'ansi-256.R' 'ansi-palette.R' 'combine.R' 'string.R' 'utils.R' 'crayon-package.R' 'disposable.R' 'enc-utils.R' 'has_ansi.R' 'has_color.R' 'link.R' 'styles.R' 'machinery.R' 'parts.R' 'print.R' 'style-var.R' 'show.R' 'string_operations.R'", + "NeedsCompilation": "no", + "Author": "Gábor Csárdi [aut, cre], Brodie Gaslam [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" + }, "crosstalk": { "Package": "crosstalk", "Version": "1.2.2", "Source": "Repository", - "Requirements": [ - "htmltools", + "Type": "Package", + "Title": "Inter-Widget Interactivity for HTML Widgets", + "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(, \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(, \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt\"), person(\"Mark\", \"Otto\", role = \"ctb\", comment = \"Bootstrap library\"), person(\"Jacob\", \"Thornton\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js library\"), person(\"Kristopher Michael\", \"Kowal\", role = c(\"ctb\", \"cph\"), comment = \"es5-shim library\"), person(, \"es5-shim contributors\", role = c(\"ctb\", \"cph\"), comment = \"es5-shim library\"), person(\"Denis\", \"Ineshin\", role = c(\"ctb\", \"cph\"), comment = \"ion.rangeSlider library\"), person(\"Sami\", \"Samhuri\", role = c(\"ctb\", \"cph\"), comment = \"Javascript strftime library\") )", + "Description": "Provides building blocks for allowing HTML widgets to communicate with each other, with Shiny or without (i.e. static .html files). Currently supports linked brushing and filtering.", + "License": "MIT + file LICENSE", + "URL": "https://rstudio.github.io/crosstalk/, https://github.com/rstudio/crosstalk", + "BugReports": "https://github.com/rstudio/crosstalk/issues", + "Imports": [ + "htmltools (>= 0.3.6)", "jsonlite", "lazyeval", "R6" - ] + ], + "Suggests": [ + "bslib", + "ggplot2", + "sass", + "shiny", + "testthat (>= 2.1.0)" + ], + "Config/Needs/website": "jcheng5/d3scatter, DT, leaflet, rmarkdown", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Joe Cheng [aut], Carson Sievert [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Brian Reavis [ctb, cph] (selectize.js library), Kristopher Michael Kowal [ctb, cph] (es5-shim library), es5-shim contributors [ctb, cph] (es5-shim library), Denis Ineshin [ctb, cph] (ion.rangeSlider library), Sami Samhuri [ctb, cph] (Javascript strftime library)", + "Maintainer": "Carson Sievert ", + "Repository": "CRAN" }, "curl": { "Package": "curl", "Version": "7.0.0", "Source": "Repository", - "Requirements": [ - "R" - ] + "Type": "Package", + "Title": "A Modern and Flexible Web Client for R", + "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Posit Software, PBC\", role = \"cph\"))", + "Description": "Bindings to 'libcurl' for performing fully configurable HTTP/FTP requests where responses can be processed in memory, on disk, or streaming via the callback or connection interfaces. Some knowledge of 'libcurl' is recommended; for a more-user-friendly web client see the 'httr2' package which builds on this package with http specific tools and logic.", + "License": "MIT + file LICENSE", + "SystemRequirements": "libcurl (>= 7.73): libcurl-devel (rpm) or libcurl4-openssl-dev (deb)", + "URL": "https://jeroen.r-universe.dev/curl", + "BugReports": "https://github.com/jeroen/curl/issues", + "Suggests": [ + "spelling", + "testthat (>= 1.0.0)", + "knitr", + "jsonlite", + "later", + "rmarkdown", + "httpuv (>= 1.4.4)", + "webutils" + ], + "VignetteBuilder": "knitr", + "Depends": [ + "R (>= 3.0.0)" + ], + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "Language": "en-US", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] (ORCID: ), Hadley Wickham [ctb], Posit Software, PBC [cph]", + "Maintainer": "Jeroen Ooms ", + "Repository": "CRAN" }, "daewr": { "Package": "daewr", "Version": "1.2-11", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Design and Analysis of Experiments with R", + "Date": "2023-09-04", + "Authors@R": "c( person(\"John\", \"Lawson\", email = \"lawsonjsl7net@gmail.com\", role=c(\"aut\",\"cre\")), person(\"Gerhard\", \"Krennrich\", email=\"krennri@uni-heidelberg.de\", role=\"aut\"), person(\"Ruben\",\"Amoros\", email=\"ruben.amoros@uv.es\", role=\"ctr\"))", + "Maintainer": "John Lawson ", + "Description": "Contains Data frames and functions used in the book \"Design and Analysis of Experiments with R\", Lawson(2015) ISBN-13:978-1-4398-6813-3.", + "License": "GPL-2", + "Depends": [ + "R (>= 3.5.0)" + ], + "Encoding": "UTF-8", + "LazyLoad": "true", + "LazyData": "true", + "Imports": [ + "stringi", + "stats", "graphics", "grDevices", - "lattice", - "R", - "stats", - "stringi" - ] + "lattice" + ], + "RoxygenNote": "7.2.3", + "NeedsCompilation": "no", + "Author": "John Lawson [aut, cre], Gerhard Krennrich [aut], Ruben Amoros [ctr]", + "Repository": "CRAN" }, "data.table": { "Package": "data.table", @@ -990,37 +2272,143 @@ "Package": "desc", "Version": "1.4.3", "Source": "Repository", - "Requirements": [ + "Title": "Manipulate DESCRIPTION Files", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Kirill\", \"Müller\", role = \"aut\"), person(\"Jim\", \"Hester\", , \"james.f.hester@gmail.com\", role = \"aut\"), person(\"Maëlle\", \"Salmon\", role = \"ctb\", comment = c(ORCID = \"0000-0002-2815-0399\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Maintainer": "Gábor Csárdi ", + "Description": "Tools to read, write, create, and manipulate DESCRIPTION files. 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Allen [ctb, cph] (Original C implementation of Myers Diff Algorithm)", + "Maintainer": "Brodie Gaslam ", + "Repository": "CRAN" }, "digest": { "Package": "digest", "Version": "0.6.39", "Source": "Repository", - "Requirements": [ - "R", + "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Antoine\", \"Lucas\", role=\"ctb\", comment = c(ORCID = \"0000-0002-8059-9767\")), person(\"Jarek\", \"Tuszynski\", role=\"ctb\"), person(\"Henrik\", \"Bengtsson\", role=\"ctb\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Simon\", \"Urbanek\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2297-1732\")), person(\"Mario\", \"Frasca\", role=\"ctb\"), person(\"Bryan\", \"Lewis\", role=\"ctb\"), person(\"Murray\", \"Stokely\", role=\"ctb\"), person(\"Hannes\", \"Muehleisen\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8552-0029\")), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Jim\", \"Hester\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Wush\", \"Wu\", role=\"ctb\", comment = c(ORCID = \"0000-0001-5180-0567\")), person(\"Qiang\", \"Kou\", role=\"ctb\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Thierry\", \"Onkelinx\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8804-4216\")), person(\"Michel\", \"Lang\", role=\"ctb\", comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Viliam\", \"Simko\", role=\"ctb\"), person(\"Kurt\", \"Hornik\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Radford\", \"Neal\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2473-3407\")), person(\"Kendon\", \"Bell\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9093-8312\")), person(\"Matthew\", \"de Queljoe\", role=\"ctb\"), person(\"Dmitry\", \"Selivanov\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0492-6647\")), person(\"Ion\", \"Suruceanu\", role=\"ctb\", comment = c(ORCID = \"0009-0005-6446-4909\")), person(\"Bill\", \"Denney\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5759-428X\")), person(\"Dirk\", \"Schumacher\", role=\"ctb\"), person(\"András\", \"Svraka\", role=\"ctb\", comment = c(ORCID = \"0009-0008-8480-1329\")), person(\"Sergey\", \"Fedorov\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5970-7233\")), person(\"Will\", \"Landau\", role=\"ctb\", comment = c(ORCID = \"0000-0003-1878-3253\")), person(\"Floris\", \"Vanderhaeghe\", role=\"ctb\", comment = c(ORCID = \"0000-0002-6378-6229\")), person(\"Kevin\", \"Tappe\", role=\"ctb\"), person(\"Harris\", \"McGehee\", role=\"ctb\"), person(\"Tim\", \"Mastny\", role=\"ctb\"), person(\"Aaron\", \"Peikert\", role=\"ctb\", comment = c(ORCID = \"0000-0001-7813-818X\")), person(\"Mark\", \"van der Loo\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9807-4686\")), person(\"Chris\", \"Muir\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2555-3878\")), person(\"Moritz\", \"Beller\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4852-0526\")), person(\"Sebastian\", \"Campbell\", role=\"ctb\", comment = c(ORCID = \"0009-0000-5948-4503\")), person(\"Winston\", \"Chang\", role=\"ctb\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Dean\", \"Attali\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5645-3493\")), person(\"Michael\", \"Chirico\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Kevin\", \"Ushey\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Carl\", \"Pearson\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0701-7860\")))", + "Date": "2025-11-19", + "Title": "Create Compact Hash Digests of R Objects", + "Description": "Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32', 'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128' algorithms) permitting easy comparison of R language objects, as well as functions such as 'hmac()' to create hash-based message authentication code. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.", + "URL": "https://github.com/eddelbuettel/digest, https://eddelbuettel.github.io/digest/, https://dirk.eddelbuettel.com/code/digest.html", + "BugReports": "https://github.com/eddelbuettel/digest/issues", + "Depends": [ + "R (>= 3.3.0)" + ], + "Imports": [ "utils" - ] + ], + "License": "GPL (>= 2)", + "Suggests": [ + "tinytest", + "simplermarkdown", + "rbenchmark" + ], + "VignetteBuilder": "simplermarkdown", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: ), Antoine Lucas [ctb] (ORCID: ), Jarek Tuszynski [ctb], Henrik Bengtsson [ctb] (ORCID: ), Simon Urbanek [ctb] (ORCID: ), Mario Frasca [ctb], Bryan Lewis [ctb], Murray Stokely [ctb], Hannes Muehleisen [ctb] (ORCID: ), Duncan Murdoch [ctb], Jim Hester [ctb] (ORCID: ), Wush Wu [ctb] (ORCID: ), Qiang Kou [ctb] (ORCID: ), Thierry Onkelinx [ctb] (ORCID: ), Michel Lang [ctb] (ORCID: ), Viliam Simko [ctb], Kurt Hornik [ctb] (ORCID: ), Radford Neal [ctb] (ORCID: ), Kendon Bell [ctb] (ORCID: ), Matthew de Queljoe [ctb], Dmitry Selivanov [ctb] (ORCID: ), Ion Suruceanu [ctb] (ORCID: ), Bill Denney [ctb] (ORCID: ), Dirk Schumacher [ctb], András Svraka [ctb] (ORCID: ), Sergey Fedorov [ctb] (ORCID: ), Will Landau [ctb] (ORCID: ), Floris Vanderhaeghe [ctb] (ORCID: ), Kevin Tappe [ctb], Harris McGehee [ctb], Tim Mastny [ctb], Aaron Peikert [ctb] (ORCID: ), Mark van der Loo [ctb] (ORCID: ), Chris Muir [ctb] (ORCID: ), Moritz Beller [ctb] (ORCID: ), Sebastian Campbell [ctb] (ORCID: ), Winston Chang [ctb] (ORCID: ), Dean Attali [ctb] (ORCID: ), Michael Chirico [ctb] (ORCID: ), Kevin Ushey [ctb] (ORCID: ), Carl Pearson [ctb] (ORCID: )", + "Maintainer": "Dirk Eddelbuettel ", + "Repository": "CRAN" }, "doBy": { "Package": "doBy", "Version": "4.7.1", "Source": "Repository", - "Requirements": [ + "Title": "Groupwise Statistics, LSmeans, Linear Estimates, Utilities", + "Authors@R": "c( person(given = \"Ulrich\", family = \"Halekoh\", email = \"uhalekoh@health.sdu.dk\", role = c(\"aut\", \"cph\")), person(given = \"Søren\", family = \"Højsgaard\", email = \"sorenh@math.aau.dk\", role = c(\"aut\", \"cre\", \"cph\")) )", + "Description": "Utility package containing: Main categories: Working with grouped data: 'do' something to data when stratified 'by' some variables. General linear estimates. Data handling utilities. Functional programming, in particular restrict functions to a smaller domain. Miscellaneous functions for data handling. Model stability in connection with model selection. Miscellaneous other tools.", + "Encoding": "UTF-8", + "VignetteBuilder": "knitr", + "LazyData": "true", + "LazyDataCompression": "xz", + "URL": "https://github.com/hojsgaard/doBy", + "License": "GPL (>= 2)", + "Depends": [ + "R (>= 4.2.0)", + "methods" + ], + "Imports": [ "boot", "broom", "cowplot", @@ -1030,15 +2418,29 @@ "ggplot2", "MASS", "Matrix", - "methods", - "microbenchmark", "modelr", - "purrr", - "R", + "microbenchmark", "rlang", + "purrr", "tibble", "tidyr" - ] + ], + "Suggests": [ + "geepack", + "knitr", + "lme4", + "markdown", + "rmarkdown", + "multcomp", + "pbkrtest (>= 0.5.2)", + "survival", + "testthat (>= 2.1.0)" + ], + "RoxygenNote": "7.3.3", + "NeedsCompilation": "no", + "Author": "Ulrich Halekoh [aut, cph], Søren Højsgaard [aut, cre, cph]", + "Maintainer": "Søren Højsgaard ", + "Repository": "CRAN" }, "dplyr": { "Package": "dplyr", @@ -1107,27 +2509,92 @@ "Package": "elliptic", "Version": "1.5-1", "Source": "Repository", - "Requirements": [ - "MASS", - "R" - ] + "Title": "Weierstrass and Jacobi Elliptic Functions", + "Authors@R": "person(given=c(\"Robin\", \"K. S.\"), family=\"Hankin\", role = c(\"aut\",\"cre\"), email=\"hankin.robin@gmail.com\", comment = c(ORCID = \"0000-0001-5982-0415\"))", + "Depends": [ + "R (>= 2.5.0)" + ], + "Imports": [ + "MASS" + ], + "Suggests": [ + "emulator", + "calibrator (>= 1.2-8)", + "testthat", + "hypergeo" + ], + "SystemRequirements": "pari/gp", + "Description": "A suite of elliptic and related functions including Weierstrass and Jacobi forms. Also includes various tools for manipulating and visualizing complex functions.", + "Maintainer": "Robin K. S. Hankin ", + "License": "GPL-2", + "URL": "https://github.com/RobinHankin/elliptic, https://robinhankin.github.io/elliptic/", + "BugReports": "https://github.com/RobinHankin/elliptic/issues", + "NeedsCompilation": "no", + "Author": "Robin K. S. Hankin [aut, cre] (ORCID: )", + "Repository": "CRAN" }, "estimability": { "Package": "estimability", "Version": "1.5.1", "Source": "Repository", - "Requirements": [ - "R", - "stats" - ] + "Type": "Package", + "Title": "Tools for Assessing Estimability of Linear Predictions", + "Date": "2024-05-12", + "Authors@R": "c(person(\"Russell\", \"Lenth\", role = c(\"aut\", \"cre\", \"cph\"), email = \"russell-lenth@uiowa.edu\"))", + "Depends": [ + "stats", + "R(>= 4.1.0)" + ], + "Suggests": [ + "knitr", + "rmarkdown" + ], + "Description": "Provides tools for determining estimability of linear functions of regression coefficients, and 'epredict' methods that handle non-estimable cases correctly. Estimability theory is discussed in many linear-models textbooks including Chapter 3 of Monahan, JF (2008), \"A Primer on Linear Models\", Chapman and Hall (ISBN 978-1-4200-6201-4).", + "URL": "https://github.com/rvlenth/estimability, https://rvlenth.github.io/estimability/", + "BugReports": "https://github.com/rvlenth/estimability/issues", + "ByteCompile": "yes", + "License": "GPL (>= 3)", + "VignetteBuilder": "knitr", + "NeedsCompilation": "no", + "Author": "Russell Lenth [aut, cre, cph]", + "Maintainer": "Russell Lenth ", + "Repository": "CRAN" }, "evaluate": { "Package": "evaluate", "Version": "1.0.5", "Source": "Repository", - "Requirements": [ - "R" - ] + "Type": "Package", + "Title": "Parsing and Evaluation Tools that Provide More Details than the Default", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Yihui\", \"Xie\", role = \"aut\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Michael\", \"Lawrence\", role = \"ctb\"), person(\"Thomas\", \"Kluyver\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\"), person(\"Barret\", \"Schloerke\", role = \"ctb\"), person(\"Adam\", \"Ryczkowski\", role = \"ctb\"), person(\"Hiroaki\", \"Yutani\", role = \"ctb\"), person(\"Michel\", \"Lang\", role = \"ctb\"), person(\"Karolis\", \"Koncevičius\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Parsing and evaluation tools that make it easy to recreate the command line behaviour of R.", + "License": "MIT + file LICENSE", + "URL": "https://evaluate.r-lib.org/, https://github.com/r-lib/evaluate", + "BugReports": "https://github.com/r-lib/evaluate/issues", + "Depends": [ + "R (>= 3.6.0)" + ], + "Suggests": [ + "callr", + "covr", + "ggplot2 (>= 3.3.6)", + "lattice", + "methods", + "pkgload", + "ragg (>= 1.4.0)", + "rlang (>= 1.1.5)", + "knitr", + "testthat (>= 3.0.0)", + "withr" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut, cre], Yihui Xie [aut] (ORCID: ), Michael Lawrence [ctb], Thomas Kluyver [ctb], Jeroen Ooms [ctb], Barret Schloerke [ctb], Adam Ryczkowski [ctb], Hiroaki Yutani [ctb], Michel Lang [ctb], Karolis Koncevičius [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" }, "farver": { "Package": "farver", @@ -1178,28 +2645,81 @@ "Package": "fastmap", "Version": "1.2.0", "Source": "Repository", - "Requirements": [] + "Title": "Fast Data Structures", + "Authors@R": "c( person(\"Winston\", \"Chang\", email = \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(given = \"Tessil\", role = \"cph\", comment = \"hopscotch_map library\") )", + "Description": "Fast implementation of data structures, including a key-value store, stack, and queue. Environments are commonly used as key-value stores in R, but every time a new key is used, it is added to R's global symbol table, causing a small amount of memory leakage. This can be problematic in cases where many different keys are used. Fastmap avoids this memory leak issue by implementing the map using data structures in C++.", + "License": "MIT + file LICENSE", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.3", + "Suggests": [ + "testthat (>= 2.1.1)" + ], + "URL": "https://r-lib.github.io/fastmap/, https://github.com/r-lib/fastmap", + "BugReports": "https://github.com/r-lib/fastmap/issues", + "NeedsCompilation": "yes", + "Author": "Winston Chang [aut, cre], Posit Software, PBC [cph, fnd], Tessil [cph] (hopscotch_map library)", + "Maintainer": "Winston Chang ", + "Repository": "CRAN" }, "fitdistrplus": { "Package": "fitdistrplus", - "Version": "1.2-6", + "Version": "1.2-4", "Source": "Repository", - "Requirements": [ - "grDevices", + "Title": "Help to Fit of a Parametric Distribution to Non-Censored or Censored Data", + "Authors@R": "c(person(\"Marie-Laure\", \"Delignette-Muller\", role = \"aut\", email = \"marielaure.delignettemuller@vetagro-sup.fr\", comment = c(ORCID = \"0000-0001-5453-3994\")), person(\"Christophe\", \"Dutang\", role = \"aut\", email = \"christophe.dutang@ensimag.fr\", comment = c(ORCID = \"0000-0001-6732-1501\")), person(\"Regis\", \"Pouillot\", role = \"ctb\"), person(\"Jean-Baptiste\", \"Denis\", role = \"ctb\"), person(\"Aurélie\", \"Siberchicot\", role = c(\"aut\", \"cre\"), email = \"aurelie.siberchicot@univ-lyon1.fr\", comment = c(ORCID = \"0000-0002-7638-8318\")))", + "Description": "Extends the fitdistr() function (of the MASS package) with several functions to help the fit of a parametric distribution to non-censored or censored data. Censored data may contain left censored, right censored and interval censored values, with several lower and upper bounds. In addition to maximum likelihood estimation (MLE), the package provides moment matching (MME), quantile matching (QME), maximum goodness-of-fit estimation (MGE) and maximum spacing estimation (MSE) methods (available only for non-censored data). Weighted versions of MLE, MME, QME and MSE are available. 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'flexplot' allows users to specify a formula and the software automatically chooses what sort of graphic to present. 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Their use is simple within 'R Markdown' documents and 'shiny' applications but also with graphic productions generated with the 'ggiraph', 'ragg' and 'svglite' packages or with tabular productions from the 'flextable' package.", + "License": "GPL-3 | file LICENSE", + "URL": "https://davidgohel.github.io/gdtools/", + "BugReports": "https://github.com/davidgohel/gdtools/issues", + "Depends": [ + "R (>= 4.0.0)" + ], + "Imports": [ + "fontquiver (>= 0.2.0)", "htmltools", - "R", - "Rcpp", - "systemfonts", + "Rcpp (>= 0.12.12)", + "systemfonts (>= 1.3.1)", "tools" - ] + ], + "Suggests": [ + "curl", + "gfonts", + "methods", + "testthat" + ], + "LinkingTo": [ + "Rcpp" + ], + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "SystemRequirements": "cairo, freetype2, fontconfig", + "NeedsCompilation": "yes", + "Author": "David Gohel [aut, cre], Hadley Wickham [aut], Lionel Henry [aut], Jeroen Ooms [aut] (ORCID: ), Yixuan Qiu [ctb], R Core Team [cph] (Cairo code from X11 device), ArData [cph], RStudio [cph]", + "Maintainer": "David Gohel ", + "Repository": "CRAN" }, "generics": { "Package": "generics", @@ -1449,14 +3195,78 @@ "Package": "ggbeeswarm", "Version": "0.7.3", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Categorical Scatter (Violin Point) Plots", + "Date": "2025-11-28", + "Authors@R": "c( person(given=\"Erik\", family=\"Clarke\", role=c(\"aut\", \"cre\"), email=\"erikclarke@gmail.com\"), person(given=\"Scott\", family=\"Sherrill-Mix\", role=c(\"aut\"), email=\"sherrillmix@gmail.com\"), person(given=\"Charlotte\", family=\"Dawson\", role=c(\"aut\"), email=\"csdaw@outlook.com\"))", + "Description": "Provides two methods of plotting categorical scatter plots such that the arrangement of points within a category reflects the density of data at that region, and avoids over-plotting.", + "URL": "https://github.com/eclarke/ggbeeswarm", + "BugReports": "https://github.com/eclarke/ggbeeswarm/issues", + "Encoding": "UTF-8", + "License": "GPL (>= 3)", + "Depends": [ + "R (>= 3.5.0)", + "ggplot2 (>= 3.3.0)" + ], + "Imports": [ "beeswarm", - "cli", - "ggplot2", "lifecycle", - "R", - "vipor" - ] + "vipor", + "cli" + ], + "Suggests": [ + "gridExtra" + ], + "RoxygenNote": "7.3.3", + "NeedsCompilation": "no", + "Author": "Erik Clarke [aut, cre], Scott Sherrill-Mix [aut], Charlotte Dawson [aut]", + "Maintainer": "Erik Clarke ", + "Repository": "CRAN" + }, + "ggh4x": { + "Package": "ggh4x", + "Version": "0.3.1", + "Source": "Repository", + "Title": "Hacks for 'ggplot2'", + "Authors@R": "person(given = \"Teun\", family = \"van den Brand\", role = c(\"aut\", \"cre\"), email = \"tahvdbrand@gmail.com\", comment = c(ORCID = \"0000-0002-9335-7468\"))", + "Description": "A 'ggplot2' extension that does a variety of little helpful things. The package extends 'ggplot2' facets through customisation, by setting individual scales per panel, resizing panels and providing nested facets. Also allows multiple colour and fill scales per plot. Also hosts a smaller collection of stats, geoms and axis guides.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/teunbrand/ggh4x, https://teunbrand.github.io/ggh4x/", + "BugReports": "https://github.com/teunbrand/ggh4x/issues", + "Depends": [ + "ggplot2 (>= 3.5.2)" + ], + "Imports": [ + "grid", + "gtable", + "scales", + "vctrs (>= 0.5.0)", + "rlang (>= 1.1.0)", + "lifecycle", + "stats", + "cli", + "S7" + ], + "Suggests": [ + "covr", + "fitdistrplus", + "ggdendro", + "vdiffr", + "knitr", + "MASS", + "rmarkdown", + "testthat (>= 3.0.0)", + "utils" + ], + "VignetteBuilder": "knitr", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "Config/testthat/edition": "3", + "Collate": "'at_panel.R' 'borrowed_ggplot2.R' 'conveniences.R' 'ggh4x_extensions.R' 'coord_axes_inside.R' 'deprecated.R' 'element_part_rect.R' 'facet_grid2.R' 'facet_wrap2.R' 'facet_manual.R' 'facet_nested.R' 'facet_nested_wrap.R' 'facetted_pos_scales.R' 'force_panelsize.R' 'geom_box.R' 'geom_outline_point.R' 'geom_pointpath.R' 'geom_polygonraster.R' 'geom_rectrug.R' 'geom_text_aimed.R' 'ggh4x-package.R' 'guide_stringlegend.R' 'help_secondary.R' 'position_disjoint_ranges.R' 'position_lineartrans.R' 'scale_facet.R' 'scale_listed.R' 'scale_manual.R' 'scale_multi.R' 'stat_difference.R' 'stat_funxy.R' 'stat_rle.R' 'stat_roll.R' 'stat_theodensity.R' 'strip_vanilla.R' 'strip_themed.R' 'strip_nested.R' 'strip_split.R' 'strip_tag.R' 'themes.R' 'utils.R' 'utils_grid.R' 'utils_gtable.R'", + "NeedsCompilation": "no", + "Author": "Teun van den Brand [aut, cre] (ORCID: )", + "Maintainer": "Teun van den Brand ", + "Repository": "RSPM" }, "ggplot2": { "Package": "ggplot2", @@ -1535,128 +3345,329 @@ "Package": "ggpp", "Version": "0.6.0", "Source": "Repository", - "Requirements": [ - "dplyr", - "ggplot2", - "glue", - "grDevices", - "grid", - "gridExtra", - "lubridate", - "MASS", - "polynom", - "R", - "rlang", - "scales", + "Type": "Package", + "Title": "Grammar Extensions to 'ggplot2'", + "Date": "2026-01-18", + "Authors@R": "c( person(\"Pedro J.\", \"Aphalo\", email = \"pedro.aphalo@helsinki.fi\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-3385-972X\")), person(\"Kamil\", \"Slowikowski\", role = \"ctb\", comment = c(ORCID = \"0000-0002-2843-6370\")), person(\"Michał\", \"Krassowski\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9638-7785\")), person(\"Daniel\", \"Sabanés Bové\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0176-9239\")), person(\"Stella\", \"Banjo\", role = \"ctb\") )", + "Maintainer": "Pedro J. Aphalo ", + "Description": "Extensions to 'ggplot2' respecting the grammar of graphics paradigm. Geometries: geom_table(), geom_plot() and geom_grob() add insets to plots using native data coordinates, while geom_table_npc(), geom_plot_npc() and geom_grob_npc() do the same using \"npc\" coordinates through new aesthetics \"npcx\" and \"npcy\". Statistics: select observations based on 2D density. Positions: radial nudging away from a center point and nudging away from a line or curve; combined stacking and nudging; combined dodging and nudging.", + "License": "GPL (>= 2)", + "LazyData": "TRUE", + "LazyLoad": "TRUE", + "ByteCompile": "TRUE", + "Depends": [ + "R (>= 4.1.0)", + "ggplot2 (>= 3.5.0)" + ], + "Imports": [ "stats", - "stringr", - "tibble", - "vctrs", - "xts", - "zoo" - ] + "grid", + "grDevices", + "rlang (>= 1.0.6)", + "vctrs (>= 0.6.0)", + "glue (>= 1.6.0)", + "gridExtra (>= 2.3)", + "scales (>= 1.3.0)", + "tibble (>= 3.1.8)", + "dplyr (>= 1.1.0)", + "xts (>= 0.13.0)", + "zoo (>= 1.8-11)", + "MASS (>= 7.3-58)", + "polynom (>= 1.4-0)", + "lubridate (>= 1.9.0)", + "stringr (>= 1.4.0)" + ], + "Suggests": [ + "knitr (>= 1.40)", + "rmarkdown (>= 2.20)", + "ggrepel (>= 0.9.2)", + "gginnards(>= 0.2.0)", + "magick (>= 2.7.3)", + "testthat (>= 3.1.5)", + "vdiffr (>= 1.0.5)" + ], + "URL": "https://docs.r4photobiology.info/ggpp/, https://github.com/aphalo/ggpp", + "BugReports": "https://github.com/aphalo/ggpp/issues", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "VignetteBuilder": "knitr", + "Collate": "'annotate.r' 'compute-npc.r' 'dark-or-light.R' 'example-data.R' 'geom-grob.R' 'ggpp-legend-draw.R' 'utilities.R' 'ggp2-margins.R' 'geom-label-linked.r' 'geom-label-npc.r' 'geom-label-pairwise.r' 'geom-margin-arrow.r' 'geom-margin-grob.r' 'geom-margin-point.r' 'geom-plot.R' 'geom-point-linked.r' 'geom-quadrant-lines.R' 'geom-table.R' 'geom-text-linked.r' 'geom-text-npc.r' 'geom-text-pairwise.R' 'ggpp.R' 'onload.R' 'position-dodge-nudge-to.R' 'position-dodge-nudge.R' 'position-dodge2-nudge.R' 'position-dodge2nudge-to.R' 'position-jitter-nudge.R' 'position-nudge-center.R' 'position-nudge-line.R' 'position-stack-nudge.R' 'position-stacknudge-to.R' 'scale-continuous-npc.r' 'stat-apply.R' 'stat-dens1d-filter.r' 'stat-dens1d-labels.r' 'stat-dens2d-filter.r' 'stat-dens2d-labels.r' 'stat-format-table.R' 'stat-functions.R' 'stat-panel-counts.R' 'stat-quadrant-counts.R' 'try-data-frame.R' 'weather-data.R' 'wrap-labels.R'", + "Config/Needs/website": "rmarkdown", + "NeedsCompilation": "no", + "Author": "Pedro J. Aphalo [aut, cre] (ORCID: ), Kamil Slowikowski [ctb] (ORCID: ), Michał Krassowski [ctb] (ORCID: ), Daniel Sabanés Bové [ctb] (ORCID: ), Stella Banjo [ctb]", + "Repository": "CRAN" }, "ggpubr": { "Package": "ggpubr", "Version": "0.6.2", "Source": "Repository", - "Requirements": [ - "cowplot", - "dplyr", - "ggplot2", - "ggrepel", + "Type": "Package", + "Title": "'ggplot2' Based Publication Ready Plots", + "Date": "2025-10-17", + "Authors@R": "c( person(\"Alboukadel\", \"Kassambara\", role = c(\"aut\", \"cre\"), email = \"alboukadel.kassambara@gmail.com\"))", + "Description": "The 'ggplot2' package is excellent and flexible for elegant data visualization in R. However the default generated plots requires some formatting before we can send them for publication. Furthermore, to customize a 'ggplot', the syntax is opaque and this raises the level of difficulty for researchers with no advanced R programming skills. 'ggpubr' provides some easy-to-use functions for creating and customizing 'ggplot2'- based publication ready plots.", + "License": "GPL (>= 2)", + "LazyData": "TRUE", + "Encoding": "UTF-8", + "Depends": [ + "R (>= 3.1.0)", + "ggplot2 (>= 3.5.2)" + ], + "Imports": [ + "ggrepel (>= 0.9.2)", + "grid", "ggsci", + "stats", + "utils", + "tidyr (>= 1.3.0)", + "purrr", + "dplyr (>= 0.7.1)", + "cowplot (>= 1.1.1)", "ggsignif", - "glue", - "grid", + "scales", "gridExtra", - "magrittr", + "glue", "polynom", - "purrr", - "R", - "rlang", - "rstatix", - "scales", - "stats", + "rlang (>= 0.4.6)", + "rstatix (>= 0.7.2)", "tibble", - "tidyr", - "utils" - ] + "magrittr" + ], + "Suggests": [ + "grDevices", + "knitr", + "RColorBrewer", + "gtable", + "testthat" + ], + "URL": "https://rpkgs.datanovia.com/ggpubr/", + "BugReports": "https://github.com/kassambara/ggpubr/issues", + "RoxygenNote": "7.3.2", + "Collate": "'utilities_color.R' 'utilities_base.R' 'desc_statby.R' 'utilities.R' 'add_summary.R' 'annotate_figure.R' 'as_ggplot.R' 'as_npc.R' 'axis_scale.R' 'background_image.R' 'bgcolor.R' 'border.R' 'compare_means.R' 'create_aes.R' 'diff_express.R' 'facet.R' 'font.R' 'gene_citation.R' 'gene_expression.R' 'geom_bracket.R' 'geom_exec.R' 'utils-aes.R' 'utils_stat_test_label.R' 'geom_pwc.R' 'get_breaks.R' 'get_coord.R' 'get_legend.R' 'get_palette.R' 'ggadd.R' 'ggadjust_pvalue.R' 'ggarrange.R' 'ggballoonplot.R' 'ggpar.R' 'ggbarplot.R' 'ggboxplot.R' 'ggdensity.R' 'ggpie.R' 'ggdonutchart.R' 'stat_conf_ellipse.R' 'stat_chull.R' 'ggdotchart.R' 'ggdotplot.R' 'ggecdf.R' 'ggerrorplot.R' 'ggexport.R' 'gghistogram.R' 'ggline.R' 'ggmaplot.R' 'ggpaired.R' 'ggparagraph.R' 'ggpubr-package.R' 'ggpubr_args.R' 'ggpubr_options.R' 'ggqqplot.R' 'utilities_label.R' 'stat_cor.R' 'stat_stars.R' 'ggscatter.R' 'ggscatterhist.R' 'ggstripchart.R' 'ggsummarystats.R' 'ggtext.R' 'ggtexttable.R' 'ggviolin.R' 'gradient_color.R' 'grids.R' 'npc_to_data_coord.R' 'reexports.R' 'rotate.R' 'rotate_axis_text.R' 'rremove.R' 'set_palette.R' 'shared_docs.R' 'show_line_types.R' 'show_point_shapes.R' 'stat_anova_test.R' 'stat_central_tendency.R' 'stat_compare_means.R' 'stat_friedman_test.R' 'stat_kruskal_test.R' 'stat_mean.R' 'stat_overlay_normal_density.R' 'stat_pvalue_manual.R' 'stat_regline_equation.R' 'stat_welch_anova_test.R' 'text_grob.R' 'theme_pubr.R' 'theme_transparent.R' 'utils-geom-signif.R' 'utils-pipe.R' 'utils-tidyr.R'", + "NeedsCompilation": "no", + "Author": "Alboukadel Kassambara [aut, cre]", + "Maintainer": "Alboukadel Kassambara ", + "Repository": "RSPM" }, "ggrain": { "Package": "ggrain", "Version": "0.1.0", "Source": "Repository", - "Requirements": [ - "cli", - "ggplot2", - "ggpp", + "Title": "A Rainclouds Geom for 'ggplot2'", + "Authors@R": "c( person(\"Nicholas\", \"Judd\", , \"nickkjudd@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0196-9871\")), person(\"Jordy\", \"van Langen\", , \"jordyvanlangen@gmail.com\", role = c(\"aut\"), comment = c(ORCID = \"0000-0003-2504-2381\")), person(\"Micah\", \"Allen\", , \"\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0001-9399-4179\")), person(\"Rogier\", \"Kievit\", , \"\", role = c(\"aut\"), comment = c(ORCID = \"0000-0003-0700-4568\")))", + "Description": "The 'geom_rain()' function adds different geoms together using 'ggplot2' to create raincloud plots.", + "License": "MIT + file LICENSE", + "Encoding": "UTF-8", + "Depends": [ + "ggplot2 (>= 4.0.0)", + "R (>= 3.4.0)" + ], + "Imports": [ "grid", - "R", + "ggpp (>= 0.5.6)", "rlang", - "vctrs" - ] + "vctrs (>= 0.5.0)", + "cli" + ], + "RoxygenNote": "7.3.3", + "URL": "https://github.com/njudd/ggrain", + "BugReports": "https://github.com/njudd/ggrain/issues", + "Suggests": [ + "knitr", + "rmarkdown" + ], + "VignetteBuilder": "knitr", + "NeedsCompilation": "no", + "Author": "Nicholas Judd [aut, cre] (ORCID: ), Jordy van Langen [aut] (ORCID: ), Micah Allen [ctb] (ORCID: ), Rogier Kievit [aut] (ORCID: )", + "Maintainer": "Nicholas Judd ", + "Repository": "CRAN" }, "ggrastr": { "Package": "ggrastr", "Version": "1.0.2", "Source": "Repository", - "Requirements": [ - "Cairo", + "Type": "Package", + "Title": "Rasterize Layers for 'ggplot2'", + "Authors@R": "c(person(\"Viktor\", \"Petukhov\", email = \"viktor.s.petukhov@ya.ru\", role = c(\"aut\", \"cph\")), person(\"Teun\", \"van den Brand\", email = \"t.vd.brand@nki.nl\", role=c(\"aut\")), person(\"Evan\", \"Biederstedt\", email = \"evan.biederstedt@gmail.com\", role=c(\"cre\", \"aut\")))", + "Description": "Rasterize only specific layers of a 'ggplot2' plot while simultaneously keeping all labels and text in vector format. This allows users to keep plots within the reasonable size limit without loosing vector properties of the scale-sensitive information.", + "License": "MIT + file LICENSE", + "Encoding": "UTF-8", + "Imports": [ + "ggplot2 (>= 2.1.0)", + "Cairo (>= 1.5.9)", "ggbeeswarm", - "ggplot2", "grid", "png", - "R", "ragg" - ] + ], + "Depends": [ + "R (>= 3.2.2)" + ], + "RoxygenNote": "7.2.3", + "Suggests": [ + "knitr", + "maps", + "rmarkdown", + "sf" + ], + "VignetteBuilder": "knitr", + "URL": "https://github.com/VPetukhov/ggrastr", + "BugReports": "https://github.com/VPetukhov/ggrastr/issues", + "NeedsCompilation": "no", + "Author": "Viktor Petukhov [aut, cph], Teun van den Brand [aut], Evan Biederstedt [cre, aut]", + "Maintainer": "Evan Biederstedt ", + "Repository": "CRAN" }, "ggrepel": { "Package": "ggrepel", "Version": "0.9.6", "Source": "Repository", - "Requirements": [ - "ggplot2", + "Authors@R": "c( person(\"Kamil\", \"Slowikowski\", email = \"kslowikowski@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-2843-6370\")), person(\"Alicia\", \"Schep\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3915-0618\")), person(\"Sean\", \"Hughes\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9409-9405\")), person(\"Trung Kien\", \"Dang\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7562-6495\")), person(\"Saulius\", \"Lukauskas\", role = \"ctb\"), person(\"Jean-Olivier\", \"Irisson\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4920-3880\")), person(\"Zhian N\", \"Kamvar\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1458-7108\")), person(\"Thompson\", \"Ryan\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0450-8181\")), person(\"Dervieux\", \"Christophe\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Yutani\", \"Hiroaki\", role = \"ctb\"), person(\"Pierre\", \"Gramme\", role = \"ctb\"), person(\"Amir Masoud\", \"Abdol\", role = \"ctb\"), person(\"Malcolm\", \"Barrett\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0299-5825\")), person(\"Robrecht\", \"Cannoodt\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3641-729X\")), person(\"Michał\", \"Krassowski\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9638-7785\")), person(\"Michael\", \"Chirico\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Pedro\", \"Aphalo\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3385-972X\")), person(\"Francis\", \"Barton\", role = \"ctb\") )", + "Title": "Automatically Position Non-Overlapping Text Labels with 'ggplot2'", + "Description": "Provides text and label geoms for 'ggplot2' that help to avoid overlapping text labels. 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This package provides an easy way to indicate if two groups are significantly different. Commonly this is shown by a bracket on top connecting the groups of interest which itself is annotated with the level of significance (NS, *, **, ***). 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The function rst2pdf() requires rst2pdf (https://github.com/rst2pdf/rst2pdf).", + "Collate": "'block.R' 'cache.R' 'citation.R' 'hooks-html.R' 'plot.R' 'utils.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R' 'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R' 'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R' 'hooks-textile.R' 'hooks.R' 'otel.R' 'output.R' 'package.R' 'pandoc.R' 'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R' 'template.R' 'utils-conversion.R' 'utils-rd2html.R' 'utils-string.R' 'utils-sweave.R' 'utils-upload.R' 'utils-vignettes.R' 'zzz.R'", + "RoxygenNote": "7.3.3", + "NeedsCompilation": "no", + "Author": "Yihui Xie [aut, cre] (ORCID: , URL: https://yihui.org), Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] (ORCID: ), Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jacob Bien [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin Modrák [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Pavel N. Krivitsky [ctb] (ORCID: ), Pedro Faria [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Rodrigo Copetti [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Sagiru Mati [ctb] (ORCID: ), Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb], Zhian N. Kamvar [ctb] (ORCID: ), Posit Software, PBC [cph, fnd]", + "Maintainer": "Yihui Xie ", + "Repository": "CRAN" }, "labeling": { "Package": "labeling", @@ -2110,11 +4605,41 @@ "Package": "later", "Version": "1.4.5", "Source": "Repository", - "Requirements": [ - "R", - "Rcpp", + "Type": "Package", + "Title": "Utilities for Scheduling Functions to Execute Later with Event Loops", + "Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Charlie\", \"Gao\", , \"charlie.gao@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0750-061X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Marcus\", \"Geelnard\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\"), person(\"Evan\", \"Nemerson\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\") )", + "Description": "Executes arbitrary R or C functions some time after the current time, after the R execution stack has emptied. The functions are scheduled in an event loop.", + "License": "MIT + file LICENSE", + "URL": "https://later.r-lib.org, https://github.com/r-lib/later", + "BugReports": "https://github.com/r-lib/later/issues", + "Depends": [ + "R (>= 3.5)" + ], + "Imports": [ + "Rcpp (>= 1.0.10)", "rlang" - ] + ], + "Suggests": [ + "knitr", + "nanonext", + "promises", + "rmarkdown", + "testthat (>= 3.0.0)" + ], + "LinkingTo": [ + "Rcpp" + ], + "VignetteBuilder": "knitr", + "Config/build/compilation-database": "true", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-07-18", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "NeedsCompilation": "yes", + "Author": "Winston Chang [aut] (ORCID: ), Joe Cheng [aut], Charlie Gao [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: ), Marcus Geelnard [ctb, cph] (TinyCThread library, https://tinycthread.github.io/), Evan Nemerson [ctb, cph] (TinyCThread library, https://tinycthread.github.io/)", + "Maintainer": "Charlie Gao ", + "Repository": "CRAN" }, "lattice": { "Package": "lattice", @@ -2159,19 +4684,53 @@ "Package": "lazyeval", "Version": "0.2.2", "Source": "Repository", - "Requirements": [ - "R" - ] + "Title": "Lazy (Non-Standard) Evaluation", + "Description": "An alternative approach to non-standard evaluation using formulas. Provides a full implementation of LISP style 'quasiquotation', making it easier to generate code with other code.", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", ,\"hadley@rstudio.com\", c(\"aut\", \"cre\")), person(\"RStudio\", role = \"cph\") )", + "License": "GPL-3", + "LazyData": "true", + "Depends": [ + "R (>= 3.1.0)" + ], + "Suggests": [ + "knitr", + "rmarkdown (>= 0.2.65)", + "testthat", + "covr" + ], + "VignetteBuilder": "knitr", + "RoxygenNote": "6.1.1", + "NeedsCompilation": "yes", + "Author": "Hadley Wickham [aut, cre], RStudio [cph]", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" }, "libcoin": { "Package": "libcoin", "Version": "1.0-10", "Source": "Repository", - "Requirements": [ - "mvtnorm", - "R", - "stats" - ] + "Title": "Linear Test Statistics for Permutation Inference", + "Date": "2023-09-26", + "Authors@R": "c(person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")), person(\"Henric\", \"Winell\", role = \"aut\", comment = c(ORCID = \"0000-0001-7995-3047\")))", + "Description": "Basic infrastructure for linear test statistics and permutation inference in the framework of Strasser and Weber (1999) . This package must not be used by end-users. CRAN package 'coin' implements all user interfaces and is ready to be used by anyone.", + "Depends": [ + "R (>= 3.4.0)" + ], + "Suggests": [ + "coin" + ], + "Imports": [ + "stats", + "mvtnorm" + ], + "LinkingTo": [ + "mvtnorm" + ], + "NeedsCompilation": "yes", + "License": "GPL-2", + "Author": "Torsten Hothorn [aut, cre] (), Henric Winell [aut] ()", + "Maintainer": "Torsten Hothorn ", + "Repository": "CRAN" }, "lifecycle": { "Package": "lifecycle", @@ -2217,65 +4776,170 @@ "Package": "litedown", "Version": "0.9", "Source": "Repository", - "Requirements": [ - "commonmark", - "R", + "Type": "Package", + "Title": "A Lightweight Version of R Markdown", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Tim\", \"Taylor\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8587-7113\")), person() )", + "Description": "Render R Markdown to Markdown (without using 'knitr'), and Markdown to lightweight HTML or 'LaTeX' documents with the 'commonmark' package (instead of 'Pandoc'). Some missing Markdown features in 'commonmark' are also supported, such as raw HTML or 'LaTeX' blocks, 'LaTeX' math, superscripts, subscripts, footnotes, element attributes, and appendices, but not all 'Pandoc' Markdown features are (or will be) supported. With additional JavaScript and CSS, you can also create HTML slides and articles. This package can be viewed as a trimmed-down version of R Markdown and 'knitr'. It does not aim at rich Markdown features or a large variety of output formats (the primary formats are HTML and 'LaTeX'). Book and website projects of multiple input documents are also supported.", + "Depends": [ + "R (>= 3.2.0)" + ], + "Imports": [ "utils", - "xfun" - ] + "commonmark (>= 2.0.0)", + "xfun (>= 0.55)" + ], + "Suggests": [ + "rbibutils", + "rstudioapi", + "tinytex" + ], + "License": "MIT + file LICENSE", + "URL": "https://github.com/yihui/litedown", + "BugReports": "https://github.com/yihui/litedown/issues", + "VignetteBuilder": "litedown", + "RoxygenNote": "7.3.3", + "Encoding": "UTF-8", + "NeedsCompilation": "no", + "Author": "Yihui Xie [aut, cre] (ORCID: , URL: https://yihui.org), Tim Taylor [ctb] (ORCID: )", + "Maintainer": "Yihui Xie ", + "Repository": "CRAN" }, "lme4": { "Package": "lme4", "Version": "1.1-38", "Source": "Repository", - "Requirements": [ - "boot", - "graphics", - "grid", - "lattice", - "MASS", + "Title": "Linear Mixed-Effects Models using 'Eigen' and S4", + "Authors@R": "c( person(\"Douglas\",\"Bates\", role=\"aut\", comment=c(ORCID=\"0000-0001-8316-9503\")), person(\"Martin\",\"Maechler\", role=\"aut\", comment=c(ORCID=\"0000-0002-8685-9910\")), person(\"Ben\",\"Bolker\",email=\"bbolker+lme4@gmail.com\", role=c(\"aut\",\"cre\"), comment=c(ORCID=\"0000-0002-2127-0443\")), person(\"Steven\",\"Walker\",role=\"aut\", comment=c(ORCID=\"0000-0002-4394-9078\")), person(\"Rune Haubo Bojesen\",\"Christensen\", role=\"ctb\", comment=c(ORCID=\"0000-0002-4494-3399\")), person(\"Henrik\",\"Singmann\", role=\"ctb\", comment=c(ORCID=\"0000-0002-4842-3657\")), person(\"Bin\", \"Dai\", role=\"ctb\"), person(\"Fabian\", \"Scheipl\", role=\"ctb\", comment=c(ORCID=\"0000-0001-8172-3603\")), person(\"Gabor\", \"Grothendieck\", role=\"ctb\"), person(\"Peter\", \"Green\", role=\"ctb\", comment=c(ORCID=\"0000-0002-0238-9852\")), person(\"John\", \"Fox\", role=\"ctb\"), person(\"Alexander\", \"Bauer\", role=\"ctb\"), person(\"Pavel N.\", \"Krivitsky\", role=c(\"ctb\",\"cph\"), comment=c(ORCID=\"0000-0002-9101-3362\", \"shared copyright on simulate.formula\")), person(\"Emi\", \"Tanaka\", role = \"ctb\", comment = c(ORCID=\"0000-0002-1455-259X\")), person(\"Mikael\", \"Jagan\", role = \"ctb\", comment = c(ORCID=\"0000-0002-3542-2938\")), person(\"Ross D.\", \"Boylan\", email=\"ross.boylan@ucsf.edu\", role=(\"ctb\"), comment = c(ORCID=\"0009-0003-4123-8090\")), person(\"Anna\", \"Ly\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0210-0342\")) )", + "Description": "Fit linear and generalized linear mixed-effects models. The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' \"glue\".", + "Depends": [ + "R (>= 3.6.0)", "Matrix", "methods", - "minqa", - "nlme", - "nloptr", + "stats" + ], + "LinkingTo": [ + "Rcpp (>= 0.10.5)", + "RcppEigen (>= 0.3.3.9.4)", + "Matrix (>= 1.5-0)" + ], + "Imports": [ + "graphics", + "grid", + "splines", + "utils", "parallel", - "R", - "Rcpp", - "RcppEigen", - "Rdpack", - "reformulas", + "MASS", + "lattice", + "boot", + "nlme (>= 3.1-123)", + "minqa (>= 1.1.15)", + "nloptr (>= 1.0.4)", + "reformulas (>= 0.3.0)", "rlang", - "splines", - "stats", - "utils" - ] + "Rdpack" + ], + "RdMacros": "Rdpack", + "Suggests": [ + "knitr", + "rmarkdown", + "MEMSS", + "testthat (>= 0.8.1)", + "ggplot2", + "mlmRev", + "optimx (>= 2013.8.6)", + "gamm4", + "pbkrtest", + "HSAUR3", + "numDeriv", + "car", + "dfoptim", + "mgcv", + "statmod", + "rr2", + "semEff", + "tibble", + "merDeriv" + ], + "Enhances": [ + "DHARMa", + "performance" + ], + "VignetteBuilder": "knitr", + "LazyData": "yes", + "License": "GPL (>= 2)", + "URL": "https://github.com/lme4/lme4/", + "BugReports": "https://github.com/lme4/lme4/issues", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Douglas Bates [aut] (ORCID: ), Martin Maechler [aut] (ORCID: ), Ben Bolker [aut, cre] (ORCID: ), Steven Walker [aut] (ORCID: ), Rune Haubo Bojesen Christensen [ctb] (ORCID: ), Henrik Singmann [ctb] (ORCID: ), Bin Dai [ctb], Fabian Scheipl [ctb] (ORCID: ), Gabor Grothendieck [ctb], Peter Green [ctb] (ORCID: ), John Fox [ctb], Alexander Bauer [ctb], Pavel N. Krivitsky [ctb, cph] (ORCID: , shared copyright on simulate.formula), Emi Tanaka [ctb] (ORCID: ), Mikael Jagan [ctb] (ORCID: ), Ross D. Boylan [ctb] (ORCID: ), Anna Ly [ctb] (ORCID: )", + "Maintainer": "Ben Bolker ", + "Repository": "CRAN" }, "lmtest": { "Package": "lmtest", "Version": "0.9-40", "Source": "Repository", - "Requirements": [ - "graphics", - "R", + "Title": "Testing Linear Regression Models", + "Date": "2022-03-21", + "Authors@R": "c(person(given = \"Torsten\", family = \"Hothorn\", role = \"aut\", email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")), person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")), person(given = c(\"Richard\", \"W.\"), family = \"Farebrother\", role = \"aut\", comment = \"pan.f\"), person(given = \"Clint\", family = \"Cummins\", role = \"aut\", comment = \"pan.f\"), person(given = \"Giovanni\", family = \"Millo\", role = \"ctb\"), person(given = \"David\", family = \"Mitchell\", role = \"ctb\"))", + "Description": "A collection of tests, data sets, and examples for diagnostic checking in linear regression models. Furthermore, some generic tools for inference in parametric models are provided.", + "LazyData": "yes", + "Depends": [ + "R (>= 3.0.0)", "stats", "zoo" - ] + ], + "Suggests": [ + "car", + "strucchange", + "sandwich", + "dynlm", + "stats4", + "survival", + "AER" + ], + "Imports": [ + "graphics" + ], + "License": "GPL-2 | GPL-3", + "NeedsCompilation": "yes", + "Author": "Torsten Hothorn [aut] (), Achim Zeileis [aut, cre] (), Richard W. Farebrother [aut] (pan.f), Clint Cummins [aut] (pan.f), Giovanni Millo [ctb], David Mitchell [ctb]", + "Maintainer": "Achim Zeileis ", + "Repository": "CRAN" }, "logspline": { "Package": "logspline", "Version": "2.1.22", "Source": "Repository", - "Requirements": [ - "graphics", - "stats" - ] + "Date": "2024-05-10", + "Maintainer": "Charles Kooperberg ", + "Title": "Routines for Logspline Density Estimation", + "Authors@R": "c(person(\"Charles\", \"Kooperberg\", role = c(\"aut\", \"cre\"), email = \"clk@fredhutch.org\"), person(\"Cleve\", \"Moler\", role = \"ctb\", comment = \"LINPACK routines in src\"), person(\"Jack\", \"Dongarra\", role = \"ctb\", comment = \"LINPACK routines in src\"))", + "Description": "Contains routines for logspline density estimation. The function oldlogspline() uses the same algorithm as the logspline package version 1.0.x; i.e. the Kooperberg and Stone (1992) algorithm (with an improved interface). The recommended routine logspline() uses an algorithm from Stone et al (1997) .", + "Imports": [ + "stats", + "graphics" + ], + "License": "Apache License 2.0", + "NeedsCompilation": "yes", + "Author": "Charles Kooperberg [aut, cre], Cleve Moler [ctb] (LINPACK routines in src), Jack Dongarra [ctb] (LINPACK routines in src)", + "Repository": "CRAN" }, "lpSolve": { "Package": "lpSolve", "Version": "5.6.23", "Source": "Repository", - "Requirements": [] + "Title": "Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"cre\"), person(\"Michel\", \"Berkelaar\", role = \"aut\") )", + "Description": "Lp_solve is freely available (under LGPL 2) software for solving linear, integer and mixed integer programs. In this implementation we supply a \"wrapper\" function in C and some R functions that solve general linear/integer problems, assignment problems, and transportation problems. This version calls lp_solve version 5.5.", + "License": "LGPL-2", + "URL": "https://github.com/gaborcsardi/lpSolve", + "BugReports": "https://github.com/gaborcsardi/lpSolve/issues", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Gábor Csárdi [cre], Michel Berkelaar [aut]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" }, "lsoda": { "Package": "lsoda", @@ -2311,12 +4975,47 @@ "Package": "lubridate", "Version": "1.9.4", "Source": "Repository", - "Requirements": [ - "generics", + "Type": "Package", + "Title": "Make Dealing with Dates a Little Easier", + "Authors@R": "c( person(\"Vitalie\", \"Spinu\", , \"spinuvit@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Garrett\", \"Grolemund\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Davis\", \"Vaughan\", role = \"ctb\"), person(\"Ian\", \"Lyttle\", role = \"ctb\"), person(\"Imanuel\", \"Costigan\", role = \"ctb\"), person(\"Jason\", \"Law\", role = \"ctb\"), person(\"Doug\", \"Mitarotonda\", role = \"ctb\"), person(\"Joseph\", \"Larmarange\", role = \"ctb\"), person(\"Jonathan\", \"Boiser\", role = \"ctb\"), person(\"Chel Hee\", \"Lee\", role = \"ctb\") )", + "Maintainer": "Vitalie Spinu ", + "Description": "Functions to work with date-times and time-spans: fast and user friendly parsing of date-time data, extraction and updating of components of a date-time (years, months, days, hours, minutes, and seconds), algebraic manipulation on date-time and time-span objects. The 'lubridate' package has a consistent and memorable syntax that makes working with dates easy and fun.", + "License": "GPL (>= 2)", + "URL": "https://lubridate.tidyverse.org, https://github.com/tidyverse/lubridate", + "BugReports": "https://github.com/tidyverse/lubridate/issues", + "Depends": [ "methods", - "R", - "timechange" - ] + "R (>= 3.2)" + ], + "Imports": [ + "generics", + "timechange (>= 0.3.0)" + ], + "Suggests": [ + "covr", + "knitr", + "rmarkdown", + "testthat (>= 2.1.0)", + "vctrs (>= 0.6.5)" + ], + "Enhances": [ + "chron", + "data.table", + "timeDate", + "tis", + "zoo" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "LazyData": "true", + "RoxygenNote": "7.2.3", + "SystemRequirements": "C++11, A system with zoneinfo data (e.g. /usr/share/zoneinfo). On Windows the zoneinfo included with R is used.", + "Collate": "'Dates.r' 'POSIXt.r' 'util.r' 'parse.r' 'timespans.r' 'intervals.r' 'difftimes.r' 'durations.r' 'periods.r' 'accessors-date.R' 'accessors-day.r' 'accessors-dst.r' 'accessors-hour.r' 'accessors-minute.r' 'accessors-month.r' 'accessors-quarter.r' 'accessors-second.r' 'accessors-tz.r' 'accessors-week.r' 'accessors-year.r' 'am-pm.r' 'time-zones.r' 'numeric.r' 'coercion.r' 'constants.r' 'cyclic_encoding.r' 'data.r' 'decimal-dates.r' 'deprecated.r' 'format_ISO8601.r' 'guess.r' 'hidden.r' 'instants.r' 'leap-years.r' 'ops-addition.r' 'ops-compare.r' 'ops-division.r' 'ops-integer-division.r' 'ops-m+.r' 'ops-modulo.r' 'ops-multiplication.r' 'ops-subtraction.r' 'package.r' 'pretty.r' 'round.r' 'stamp.r' 'tzdir.R' 'update.r' 'vctrs.R' 'zzz.R'", + "NeedsCompilation": "yes", + "Author": "Vitalie Spinu [aut, cre], Garrett Grolemund [aut], Hadley Wickham [aut], Davis Vaughan [ctb], Ian Lyttle [ctb], Imanuel Costigan [ctb], Jason Law [ctb], Doug Mitarotonda [ctb], Joseph Larmarange [ctb], Jonathan Boiser [ctb], Chel Hee Lee [ctb]", + "Repository": "CRAN" }, "magrittr": { "Package": "magrittr", @@ -2353,29 +5052,95 @@ "Package": "markdown", "Version": "2.0", "Source": "Repository", - "Requirements": [ - "litedown", - "R", + "Type": "Package", + "Title": "Render Markdown with 'commonmark'", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"JJ\", \"Allaire\", role = \"aut\"), person(\"Jeffrey\", \"Horner\", role = \"aut\"), person(\"Henrik\", \"Bengtsson\", role = \"ctb\"), person(\"Jim\", \"Hester\", role = \"ctb\"), person(\"Yixuan\", \"Qiu\", role = \"ctb\"), person(\"Kohske\", \"Takahashi\", role = \"ctb\"), person(\"Adam\", \"November\", role = \"ctb\"), person(\"Nacho\", \"Caballero\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\"), person(\"Thomas\", \"Leeper\", role = \"ctb\"), person(\"Joe\", \"Cheng\", role = \"ctb\"), person(\"Andrzej\", \"Oles\", role = \"ctb\"), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Render Markdown to full and lightweight HTML/LaTeX documents with the 'commonmark' package. This package has been superseded by 'litedown'.", + "Depends": [ + "R (>= 2.11.1)" + ], + "Imports": [ "utils", - "xfun" - ] + "xfun", + "litedown (>= 0.6)" + ], + "Suggests": [ + "knitr", + "rmarkdown (>= 2.18)", + "yaml", + "RCurl" + ], + "License": "MIT + file LICENSE", + "URL": "https://github.com/rstudio/markdown", + "BugReports": "https://github.com/rstudio/markdown/issues", + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "NeedsCompilation": "no", + "Author": "Yihui Xie [aut, cre] (), JJ Allaire [aut], Jeffrey Horner [aut], Henrik Bengtsson [ctb], Jim Hester [ctb], Yixuan Qiu [ctb], Kohske Takahashi [ctb], Adam November [ctb], Nacho Caballero [ctb], Jeroen Ooms [ctb], Thomas Leeper [ctb], Joe Cheng [ctb], Andrzej Oles [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Yihui Xie ", + "Repository": "CRAN" }, "matrixStats": { "Package": "matrixStats", "Version": "1.5.0", "Source": "Repository", - "Requirements": [ - "R" - ] + "Depends": [ + "R (>= 3.4.0)" + ], + "Suggests": [ + "utils", + "base64enc", + "ggplot2", + "knitr", + "markdown", + "microbenchmark", + "R.devices", + "R.rsp" + ], + "VignetteBuilder": "R.rsp", + "Title": "Functions that Apply to Rows and Columns of Matrices (and to Vectors)", + "Authors@R": "c( person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email=\"henrikb@braju.com\"), person(\"Constantin\", \"Ahlmann-Eltze\", role = \"ctb\"), person(\"Hector\", \"Corrada Bravo\", role=\"ctb\"), person(\"Robert\", \"Gentleman\", role=\"ctb\"), person(\"Jan\", \"Gleixner\", role=\"ctb\"), person(\"Peter\", \"Hickey\", role=\"ctb\"), person(\"Ola\", \"Hossjer\", role=\"ctb\"), person(\"Harris\", \"Jaffee\", role=\"ctb\"), person(\"Dongcan\", \"Jiang\", role=\"ctb\"), person(\"Peter\", \"Langfelder\", role=\"ctb\"), person(\"Brian\", \"Montgomery\", role=\"ctb\"), person(\"Angelina\", \"Panagopoulou\", role=\"ctb\"), person(\"Hugh\", \"Parsonage\", role=\"ctb\"), person(\"Jakob Peder\", \"Pettersen\", role=\"ctb\"))", + "Author": "Henrik Bengtsson [aut, cre, cph], Constantin Ahlmann-Eltze [ctb], Hector Corrada Bravo [ctb], Robert Gentleman [ctb], Jan Gleixner [ctb], Peter Hickey [ctb], Ola Hossjer [ctb], Harris Jaffee [ctb], Dongcan Jiang [ctb], Peter Langfelder [ctb], Brian Montgomery [ctb], Angelina Panagopoulou [ctb], Hugh Parsonage [ctb], Jakob Peder Pettersen [ctb]", + "Maintainer": "Henrik Bengtsson ", + "Description": "High-performing functions operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized. There are also optimized vector-based methods, e.g. binMeans(), madDiff() and weightedMedian().", + "License": "Artistic-2.0", + "LazyLoad": "TRUE", + "NeedsCompilation": "yes", + "ByteCompile": "TRUE", + "URL": "https://github.com/HenrikBengtsson/matrixStats", + "BugReports": "https://github.com/HenrikBengtsson/matrixStats/issues", + "RoxygenNote": "7.3.2", + "Repository": "CRAN" }, "memoise": { "Package": "memoise", "Version": "2.0.1", "Source": "Repository", - "Requirements": [ - "cachem", - "rlang" - ] + "Title": "'Memoisation' of Functions", + "Authors@R": "c(person(given = \"Hadley\", family = \"Wickham\", role = \"aut\", email = \"hadley@rstudio.com\"), person(given = \"Jim\", family = \"Hester\", role = \"aut\"), person(given = \"Winston\", family = \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@rstudio.com\"), person(given = \"Kirill\", family = \"Müller\", role = \"aut\", email = \"krlmlr+r@mailbox.org\"), person(given = \"Daniel\", family = \"Cook\", role = \"aut\", email = \"danielecook@gmail.com\"), person(given = \"Mark\", family = \"Edmondson\", role = \"ctb\", email = \"r@sunholo.com\"))", + "Description": "Cache the results of a function so that when you call it again with the same arguments it returns the previously computed value.", + "License": "MIT + file LICENSE", + "URL": "https://memoise.r-lib.org, https://github.com/r-lib/memoise", + "BugReports": "https://github.com/r-lib/memoise/issues", + "Imports": [ + "rlang (>= 0.4.10)", + "cachem" + ], + "Suggests": [ + "digest", + "aws.s3", + "covr", + "googleAuthR", + "googleCloudStorageR", + "httr", + "testthat" + ], + "Encoding": "UTF-8", + "RoxygenNote": "7.1.2", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut], Jim Hester [aut], Winston Chang [aut, cre], Kirill Müller [aut], Daniel Cook [aut], Mark Edmondson [ctb]", + "Maintainer": "Winston Chang ", + "Repository": "CRAN" }, "mgcv": { "Package": "mgcv", @@ -2414,70 +5179,177 @@ "Package": "microbenchmark", "Version": "1.5.0", "Source": "Repository", - "Requirements": [ + "Title": "Accurate Timing Functions", + "Description": "Provides infrastructure to accurately measure and compare the execution time of R expressions.", + "Authors@R": "c(person(\"Olaf\", \"Mersmann\", role=c(\"aut\")), person(\"Claudia\", \"Beleites\", role=c(\"ctb\")), person(\"Rainer\", \"Hurling\", role=c(\"ctb\")), person(\"Ari\", \"Friedman\", role=c(\"ctb\")), person(given=c(\"Joshua\",\"M.\"), family=\"Ulrich\", role=\"cre\", email=\"josh.m.ulrich@gmail.com\"))", + "URL": "https://github.com/joshuaulrich/microbenchmark/", + "BugReports": "https://github.com/joshuaulrich/microbenchmark/issues/", + "License": "BSD_2_clause + file LICENSE", + "Depends": [ + "R (>= 3.2.0)" + ], + "Imports": [ "graphics", - "R", "stats" - ] + ], + "Suggests": [ + "ggplot2", + "multcomp", + "RUnit" + ], + "SystemRequirements": "On a Unix-alike, one of the C functions mach_absolute_time (macOS), clock_gettime or gethrtime. If none of these is found, the obsolescent POSIX function gettimeofday will be tried.", + "ByteCompile": "yes", + "NeedsCompilation": "yes", + "Author": "Olaf Mersmann [aut], Claudia Beleites [ctb], Rainer Hurling [ctb], Ari Friedman [ctb], Joshua M. Ulrich [cre]", + "Maintainer": "Joshua M. Ulrich ", + "Repository": "CRAN" }, "mime": { "Package": "mime", "Version": "0.13", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Map Filenames to MIME Types", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Jeffrey\", \"Horner\", role = \"ctb\"), person(\"Beilei\", \"Bian\", role = \"ctb\") )", + "Description": "Guesses the MIME type from a filename extension using the data derived from /etc/mime.types in UNIX-type systems.", + "Imports": [ "tools" - ] + ], + "License": "GPL", + "URL": "https://github.com/yihui/mime", + "BugReports": "https://github.com/yihui/mime/issues", + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Yihui Xie [aut, cre] (, https://yihui.org), Jeffrey Horner [ctb], Beilei Bian [ctb]", + "Maintainer": "Yihui Xie ", + "Repository": "CRAN" }, "minqa": { "Package": "minqa", "Version": "1.2.8", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Derivative-Free Optimization Algorithms by Quadratic Approximation", + "Authors@R": "c(person(given = \"Douglas\", family = \"Bates\", role = \"aut\"), person(given = c(\"Katharine\", \"M.\"), family = \"Mullen\", role = c(\"aut\", \"cre\"), email = \"katharine.mullen@stat.ucla.edu\"), person(given = c(\"John\", \"C.\"), family = \"Nash\", role = \"aut\"), person(given = \"Ravi\", family = \"Varadhan\", role = \"aut\"))", + "Maintainer": "Katharine M. Mullen ", + "Description": "Derivative-free optimization by quadratic approximation based on an interface to Fortran implementations by M. J. D. Powell.", + "License": "GPL-2", + "URL": "http://optimizer.r-forge.r-project.org", + "Imports": [ + "Rcpp (>= 0.9.10)" + ], + "LinkingTo": [ "Rcpp" - ] + ], + "SystemRequirements": "GNU make", + "NeedsCompilation": "yes", + "Repository": "CRAN", + "Author": "Douglas Bates [aut], Katharine M. Mullen [aut, cre], John C. Nash [aut], Ravi Varadhan [aut]" }, "mle.tools": { "Package": "mle.tools", "Version": "1.0.0", "Source": "Repository", - "Requirements": [ - "R", + "Type": "Package", + "Title": "Expected/Observed Fisher Information and Bias-Corrected Maximum Likelihood Estimate(s)", + "License": "GPL (>= 2)", + "Date": "2017-02-21", + "Author": "Josmar Mazucheli", + "Maintainer": "Josmar Mazucheli ", + "Description": "Calculates the expected/observed Fisher information and the bias-corrected maximum likelihood estimate(s) via Cox-Snell Methodology.", + "Depends": [ + "R (>= 3.0.2)" + ], + "Imports": [ "stats" - ] + ], + "Suggests": [ + "fitdistrplus (>= 1.0-6)" + ], + "RoxygenNote": "5.0.1", + "Encoding": "UTF-8", + "NeedsCompilation": "no", + "Repository": "CRAN" }, "mnormt": { "Package": "mnormt", "Version": "2.1.1", "Source": "Repository", - "Requirements": [ - "R" - ] + "Date": "2022-09-26", + "Title": "The Multivariate Normal and t Distributions, and Their Truncated Versions", + "Author": "Adelchi Azzalini [aut, cre], Alan Genz [aut] (most Fortran code), Alan Miller [ctb] (Fortran routine PHI), Michael J. Wichura [ctb] (Fortran routine PHINV), G. W. Hill [ctb] (Fortran routine STDINV), Yihong Ge [ctb] (Fortran routines BNVU and MVBVU).", + "Maintainer": "Adelchi Azzalini ", + "Depends": [ + "R (>= 2.2.0)" + ], + "Description": "Functions are provided for computing the density and the distribution function of d-dimensional normal and \"t\" random variables, possibly truncated (on one side or two sides), and for generating random vectors sampled from these distributions, except sampling from the truncated \"t\". Moments of arbitrary order of a multivariate truncated normal are computed, and converted to cumulants up to order 4. Probabilities are computed via non-Monte Carlo methods; different routines are used in the case d=1, d=2, d=3, d>3, if d denotes the dimensionality.", + "License": "GPL-2 | GPL-3", + "URL": "http://azzalini.stat.unipd.it/SW/Pkg-mnormt/", + "NeedsCompilation": "yes", + "Encoding": "UTF-8", + "Repository": "CRAN" }, "modelr": { "Package": "modelr", "Version": "0.1.11", "Source": "Repository", - "Requirements": [ + "Title": "Modelling Functions that Work with the Pipe", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Functions for modelling that help you seamlessly integrate modelling into a pipeline of data manipulation and visualisation.", + "License": "GPL-3", + "URL": "https://modelr.tidyverse.org, https://github.com/tidyverse/modelr", + "BugReports": "https://github.com/tidyverse/modelr/issues", + "Depends": [ + "R (>= 3.2)" + ], + "Imports": [ "broom", "magrittr", - "purrr", - "R", - "rlang", + "purrr (>= 0.2.2)", + "rlang (>= 1.0.6)", "tibble", - "tidyr", + "tidyr (>= 0.8.0)", "tidyselect", "vctrs" - ] + ], + "Suggests": [ + "compiler", + "covr", + "ggplot2", + "testthat (>= 3.0.0)" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "LazyData": "true", + "RoxygenNote": "7.2.3", + "Config/testthat/edition": "3", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd]", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" }, "modeltools": { "Package": "modeltools", "Version": "0.2-24", "Source": "Repository", - "Requirements": [ - "methods", + "Title": "Tools and Classes for Statistical Models", + "Date": "2025-05-02", + "Authors@R": "c(person(given = \"Torsten\", family = \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")), person(given = \"Friedrich\", family = \"Leisch\", role = \"aut\", comment = c(ORCID = \"0000-0001-7278-1983\")), person(given = \"Achim\", family = \"Zeileis\", role = \"aut\", comment = c(ORCID = \"0000-0003-0918-3766\")))", + "Description": "A collection of tools to deal with statistical models. The functionality is experimental and the user interface is likely to change in the future. The documentation is rather terse, but packages `coin' and `party' have some working examples. However, if you find the implemented ideas interesting we would be very interested in a discussion of this proposal. Contributions are more than welcome!", + "Depends": [ "stats", "stats4" - ] + ], + "Imports": [ + "methods" + ], + "LazyLoad": "yes", + "License": "GPL-2", + "NeedsCompilation": "no", + "Author": "Torsten Hothorn [aut, cre] (ORCID: ), Friedrich Leisch [aut] (ORCID: ), Achim Zeileis [aut] (ORCID: )", + "Maintainer": "Torsten Hothorn ", + "Repository": "CRAN" }, "mstate": { "Package": "mstate", @@ -2537,15 +5409,50 @@ "Package": "multcomp", "Version": "1.4-29", "Source": "Repository", - "Requirements": [ - "codetools", - "graphics", - "mvtnorm", - "sandwich", + "Title": "Simultaneous Inference in General Parametric Models", + "Date": "2025-10-19", + "Authors@R": "c(person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")), person(\"Frank\", \"Bretz\", role = \"aut\"), person(\"Peter\", \"Westfall\", role = \"aut\"), person(\"Richard M.\", \"Heiberger\", role = \"ctb\"), person(\"Andre\", \"Schuetzenmeister\", role = \"ctb\"), person(\"Susan\", \"Scheibe\", role = \"ctb\"))", + "Description": "Simultaneous tests and confidence intervals for general linear hypotheses in parametric models, including linear, generalized linear, linear mixed effects, and survival models. The package includes demos reproducing analyzes presented in the book \"Multiple Comparisons Using R\" (Bretz, Hothorn, Westfall, 2010, CRC Press).", + "Depends": [ "stats", - "survival", - "TH.data" - ] + "graphics", + "mvtnorm (>= 1.0-10)", + "survival (>= 2.39-4)", + "TH.data (>= 1.0-2)" + ], + "Imports": [ + "sandwich (>= 2.3-0)", + "codetools" + ], + "Suggests": [ + "lme4 (>= 0.999375-16)", + "nlme", + "robustbase", + "coin", + "MASS", + "foreign", + "xtable", + "lmtest", + "coxme (>= 2.2-1)", + "SimComp", + "ISwR", + "tram (>= 0.2-5)", + "fixest (>= 0.10)", + "glmmTMB", + "DoseFinding", + "HH", + "asd", + "gsDesign", + "lattice" + ], + "URL": "http://multcomp.R-forge.R-project.org, https://www.routledge.com/Multiple-Comparisons-Using-R/Bretz-Hothorn-Westfall/p/book/9781584885740", + "LazyData": "yes", + "License": "GPL-2", + "NeedsCompilation": "no", + "Author": "Torsten Hothorn [aut, cre] (ORCID: ), Frank Bretz [aut], Peter Westfall [aut], Richard M. Heiberger [ctb], Andre Schuetzenmeister [ctb], Susan Scheibe [ctb]", + "Maintainer": "Torsten Hothorn ", + "Repository": "RSPM", + "Encoding": "UTF-8" }, "mvtnorm": { "Package": "mvtnorm", @@ -2610,25 +5517,70 @@ "Package": "nloptr", "Version": "2.2.1", "Source": "Repository", - "Requirements": [] + "Type": "Package", + "Title": "R Interface to NLopt", + "Authors@R": "c(person(\"Jelmer\", \"Ypma\", role = \"aut\", email = \"uctpjyy@ucl.ac.uk\"), person(c(\"Steven\", \"G.\"), \"Johnson\", role = \"aut\", comment = \"author of the NLopt C library\"), person(\"Aymeric\", \"Stamm\", role = c(\"ctb\", \"cre\"), email = \"aymeric.stamm@cnrs.fr\", comment = c(ORCID = \"0000-0002-8725-3654\")), person(c(\"Hans\", \"W.\"), \"Borchers\", role = \"ctb\", email = \"hwborchers@googlemail.com\"), person(\"Dirk\", \"Eddelbuettel\", role = \"ctb\", email = \"edd@debian.org\"), person(\"Brian\", \"Ripley\", role = \"ctb\", comment = \"build process on multiple OS\"), person(\"Kurt\", \"Hornik\", role = \"ctb\", comment = \"build process on multiple OS\"), person(\"Julien\", \"Chiquet\", role = \"ctb\"), person(\"Avraham\", \"Adler\", role = \"ctb\", email = \"Avraham.Adler@gmail.com\", comment = c(ORCID = \"0000-0002-3039-0703\")), person(\"Xiongtao\", \"Dai\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\", email = \"jeroen@berkeley.edu\"), person(\"Tomas\", \"Kalibera\", role = \"ctb\"), person(\"Mikael\", \"Jagan\", role = \"ctb\"))", + "Description": "Solve optimization problems using an R interface to NLopt. NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms. See for more information on the available algorithms. Building from included sources requires 'CMake'. On Linux and 'macOS', if a suitable system build of NLopt (2.7.0 or later) is found, it is used; otherwise, it is built from included sources via 'CMake'. On Windows, NLopt is obtained through 'rwinlib' for 'R <= 4.1.x' or grabbed from the appropriate toolchain for 'R >= 4.2.0'.", + "License": "LGPL (>= 3)", + "SystemRequirements": "cmake (>= 3.2.0) which is used only on Linux or macOS systems when no system build of nlopt (>= 2.7.0) can be found.", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "Suggests": [ + "knitr", + "rmarkdown", + "covr", + "tinytest" + ], + "VignetteBuilder": "knitr", + "URL": "https://github.com/astamm/nloptr, https://astamm.github.io/nloptr/", + "BugReports": "https://github.com/astamm/nloptr/issues", + "NeedsCompilation": "yes", + "UseLTO": "yes", + "Author": "Jelmer Ypma [aut], Steven G. Johnson [aut] (author of the NLopt C library), Aymeric Stamm [ctb, cre] (), Hans W. Borchers [ctb], Dirk Eddelbuettel [ctb], Brian Ripley [ctb] (build process on multiple OS), Kurt Hornik [ctb] (build process on multiple OS), Julien Chiquet [ctb], Avraham Adler [ctb] (), Xiongtao Dai [ctb], Jeroen Ooms [ctb], Tomas Kalibera [ctb], Mikael Jagan [ctb]", + "Maintainer": "Aymeric Stamm ", + "Repository": "CRAN" }, "nnet": { "Package": "nnet", "Version": "7.3-20", "Source": "Repository", - "Requirements": [ - "R", + "Priority": "recommended", + "Date": "2025-01-01", + "Depends": [ + "R (>= 3.0.0)", "stats", "utils" - ] + ], + "Suggests": [ + "MASS" + ], + "Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Brian.Ripley@R-project.org\"), person(\"William\", \"Venables\", role = \"cph\"))", + "Description": "Software for feed-forward neural networks with a single hidden layer, and for multinomial log-linear models.", + "Title": "Feed-Forward Neural Networks and Multinomial Log-Linear Models", + "ByteCompile": "yes", + "License": "GPL-2 | GPL-3", + "URL": "http://www.stats.ox.ac.uk/pub/MASS4/", + "NeedsCompilation": "yes", + "Author": "Brian Ripley [aut, cre, cph], William Venables [cph]", + "Maintainer": "Brian Ripley ", + "Repository": "CRAN" }, "nortest": { "Package": "nortest", "Version": "1.0-4", "Source": "Repository", - "Requirements": [ + "Title": "Tests for Normality", + "Date": "2015-07-29", + "Description": "Five omnibus tests for testing the composite hypothesis of normality.", + "License": "GPL (>= 2)", + "Authors@R": "c(person(\"Juergen\", \"Gross\", role = \"aut\", email = \"gross@statistik.tu-dortmund.de\"), person(\"Uwe\", \"Ligges\", role = c(\"aut\", \"cre\"), email = \"ligges@statistik.tu-dortmund.de\"))", + "Imports": [ "stats" - ] + ], + "Author": "Juergen Gross [aut], Uwe Ligges [aut, cre]", + "Maintainer": "Uwe Ligges ", + "NeedsCompilation": "no", + "Repository": "CRAN" }, "numDeriv": { "Package": "numDeriv", @@ -2653,15 +5605,35 @@ "Package": "numbers", "Version": "0.9-2", "Source": "Repository", - "Requirements": [ - "R" - ] + "Type": "Package", + "Title": "Number-Theoretic Functions", + "Date": "2025-11-19", + "Authors@R": "c(person(given = c(\"Hans\", \"Werner\"), family = \"Borchers\", role = \"aut\"), person(given = c(\"Hans\", \"W.\"), family = \"Borchers\", role = \"cre\", email = \"hwborchers@googlemail.com\"))", + "Depends": [ + "R (>= 4.1.0)" + ], + "Suggests": [ + "gmp (>= 0.5-1)" + ], + "Description": "Provides number-theoretic functions for factorization, prime numbers, twin primes, primitive roots, modular logarithm and inverses, extended GCD, Farey series and continued fractions. Includes Legendre and Jacobi symbols, some divisor functions, Euler's Phi function, etc.", + "License": "GPL (>= 3)", + "NeedsCompilation": "no", + "Author": "Hans Werner Borchers [aut], Hans W. Borchers [cre]", + "Maintainer": "Hans W. Borchers ", + "Repository": "CRAN" }, "officer": { "Package": "officer", "Version": "0.7.3", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Manipulation of Microsoft Word and PowerPoint Documents", + "Authors@R": "c( person(\"David\", \"Gohel\", , \"david.gohel@ardata.fr\", role = c(\"aut\", \"cre\")), person(\"Stefan\", \"Moog\", , \"moogs@gmx.de\", role = \"aut\"), person(\"Mark\", \"Heckmann\", , \"heckmann.mark@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-0736-7417\")), person(\"ArData\", role = \"cph\"), person(\"Frank\", \"Hangler\", , \"frank@plotandscatter.com\", role = \"ctb\", comment = \"function body_replace_all_text\"), person(\"Liz\", \"Sander\", , \"lsander@civisanalytics.com\", role = \"ctb\", comment = \"several documentation fixes\"), person(\"Anton\", \"Victorson\", , \"anton@victorson.se\", role = \"ctb\", comment = \"fixes xml structures\"), person(\"Jon\", \"Calder\", , \"jonmcalder@gmail.com\", role = \"ctb\", comment = \"update vignettes\"), person(\"John\", \"Harrold\", , \"john.m.harrold@gmail.com\", role = \"ctb\", comment = \"function annotate_base\"), person(\"John\", \"Muschelli\", , \"muschellij2@gmail.com\", role = \"ctb\", comment = \"google doc compatibility\"), person(\"Bill\", \"Denney\", , \"wdenney@humanpredictions.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5759-428X\", \"function as.matrix.rpptx\")), person(\"Nikolai\", \"Beck\", , \"beck.nikolai@gmail.com\", role = \"ctb\", comment = \"set speaker notes for .pptx documents\"), person(\"Greg\", \"Leleu\", , \"gregoire.leleu@gmail.com\", role = \"ctb\", comment = \"fields functionality in ppt\"), person(\"Majid\", \"Eismann\", role = \"ctb\"), person(\"Wahiduzzaman\", \"Khan\", role = \"ctb\", comment = \"vectorization of remove_slide\"), person(\"Hongyuan\", \"Jia\", , \"hongyuanjia@cqust.edu.cn\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0075-8183\")), person(\"Michael\", \"Stackhouse\", , \"mike.stackhouse@atorusresearch.com\", role = \"ctb\") )", + "Description": "Access and manipulate 'Microsoft Word', 'RTF' and 'Microsoft PowerPoint' documents from R. The package focuses on tabular and graphical reporting from R; it also provides two functions that let users get document content into data objects. A set of functions lets add and remove images, tables and paragraphs of text in new or existing documents. The package does not require any installation of Microsoft products to be able to write Microsoft files.", + "License": "MIT + file LICENSE", + "URL": "https://ardata-fr.github.io/officeverse/, https://davidgohel.github.io/officer/", + "BugReports": "https://github.com/davidgohel/officer/issues", + "Imports": [ "cli", "dplyr", "graphics", @@ -2673,97 +5645,282 @@ "tidyr", "utils", "uuid", - "xml2", - "zip" - ] + "xml2 (>= 1.1.0)", + "zip (>= 2.1.0)" + ], + "Suggests": [ + "devEMF", + "doconv (>= 0.3.0)", + "gdtools", + "ggplot2", + "knitr", + "magick", + "rmarkdown", + "rsvg", + "testthat", + "withr" + ], + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "Collate": "'core_properties.R' 'custom_properties.R' 'defunct.R' 'dev-utils.R' 'docx_add.R' 'docx_comments.R' 'docx_cursor.R' 'docx_part.R' 'docx_replace.R' 'docx_section.R' 'docx_settings.R' 'docx_styles.R' 'docx_utils_funs.R' 'empty_content.R' 'formatting_properties.R' 'fortify_docx.R' 'fortify_pptx.R' 'knitr_utils.R' 'officer.R' 'ooxml.R' 'ooxml_block_objects.R' 'ooxml_run_objects.R' 'openxml_content_type.R' 'openxml_document.R' 'pack_folder.R' 'ph_location.R' 'post-proc.R' 'ppt_class_dir_collection.R' 'ppt_classes.R' 'ppt_notes.R' 'ppt_ph_dedupe_layout.R' 'ppt_ph_manipulate.R' 'ppt_ph_rename_layout.R' 'ppt_ph_with_methods.R' 'pptx_informations.R' 'pptx_layout_helper.R' 'pptx_matrix.R' 'utils.R' 'pptx_slide_manip.R' 'read_docx.R' 'docx_write.R' 'read_docx_styles.R' 'read_pptx.R' 'read_xlsx.R' 'relationship.R' 'rtf.R' 'shape_properties.R' 'shorcuts.R' 'docx_append_context.R' 'utils-xml.R' 'deprecated.R' 'zzz.R'", + "NeedsCompilation": "no", + "Author": "David Gohel [aut, cre], Stefan Moog [aut], Mark Heckmann [aut] (ORCID: ), ArData [cph], Frank Hangler [ctb] (function body_replace_all_text), Liz Sander [ctb] (several documentation fixes), Anton Victorson [ctb] (fixes xml structures), Jon Calder [ctb] (update vignettes), John Harrold [ctb] (function annotate_base), John Muschelli [ctb] (google doc compatibility), Bill Denney [ctb] (ORCID: , function as.matrix.rpptx), Nikolai Beck [ctb] (set speaker notes for .pptx documents), Greg Leleu [ctb] (fields functionality in ppt), Majid Eismann [ctb], Wahiduzzaman Khan [ctb] (vectorization of remove_slide), Hongyuan Jia [ctb] (ORCID: ), Michael Stackhouse [ctb]", + "Maintainer": "David Gohel ", + "Repository": "CRAN" }, "openssl": { "Package": "openssl", "Version": "2.3.4", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Toolkit for Encryption, Signatures and Certificates Based on OpenSSL", + "Authors@R": "c(person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Oliver\", \"Keyes\", role = \"ctb\"))", + "Description": "Bindings to OpenSSL libssl and libcrypto, plus custom SSH key parsers. Supports RSA, DSA and EC curves P-256, P-384, P-521, and curve25519. Cryptographic signatures can either be created and verified manually or via x509 certificates. AES can be used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric (public key) encryption or EC for Diffie Hellman. High-level envelope functions combine RSA and AES for encrypting arbitrary sized data. Other utilities include key generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random number generator, and 'bignum' math methods for manually performing crypto calculations on large multibyte integers.", + "License": "MIT + file LICENSE", + "URL": "https://jeroen.r-universe.dev/openssl", + "BugReports": "https://github.com/jeroen/openssl/issues", + "SystemRequirements": "OpenSSL >= 1.0.2", + "VignetteBuilder": "knitr", + "Imports": [ "askpass" - ] + ], + "Suggests": [ + "curl", + "testthat (>= 2.1.0)", + "digest", + "knitr", + "rmarkdown", + "jsonlite", + "jose", + "sodium" + ], + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] (ORCID: ), Oliver Keyes [ctb]", + "Maintainer": "Jeroen Ooms ", + "Repository": "CRAN" }, "otel": { "Package": "otel", "Version": "0.2.0", "Source": "Repository", - "Requirements": [ - "R" - ] + "Title": "OpenTelemetry R API", + "Authors@R": "person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\"))", + "Description": "High-quality, ubiquitous, and portable telemetry to enable effective observability. OpenTelemetry is a collection of tools, APIs, and SDKs used to instrument, generate, collect, and export telemetry data (metrics, logs, and traces) for analysis in order to understand your software's performance and behavior. This package implements the OpenTelemetry API: . Use this package as a dependency if you want to instrument your R package for OpenTelemetry.", + "License": "MIT + file LICENSE", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2.9000", + "Depends": [ + "R (>= 3.6.0)" + ], + "Suggests": [ + "callr", + "cli", + "glue", + "jsonlite", + "otelsdk", + "processx", + "shiny", + "spelling", + "testthat (>= 3.0.0)", + "utils", + "withr" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "URL": "https://otel.r-lib.org, https://github.com/r-lib/otel", + "Additional_repositories": "https://github.com/r-lib/otelsdk/releases/download/devel", + "BugReports": "https://github.com/r-lib/otel/issues", + "NeedsCompilation": "no", + "Author": "Gábor Csárdi [aut, cre]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" }, "partitions": { "Package": "partitions", "Version": "1.10-9", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Additive Partitions of Integers", + "Depends": [ + "R (>= 3.6.0)" + ], + "Authors@R": "c( person(given=c(\"Robin\", \"K. S.\"), family=\"Hankin\", role = c(\"aut\",\"cre\"), email=\"hankin.robin@gmail.com\", comment = c(ORCID = \"0000-0001-5982-0415\")), person(\"Paul\", \"Egeler\", email = \"paulegeler@gmail.com\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0001-6948-9498\")) )", + "Maintainer": "Robin K. S. Hankin ", + "Imports": [ "gmp", "polynom", - "R", - "Rdpack", - "sets" - ] + "sets", + "Rdpack" + ], + "Description": "Additive partitions of integers. Enumerates the partitions, unequal partitions, and restricted partitions of an integer; the three corresponding partition functions are also given. Set partitions and now compositions and riffle shuffles are included.", + "Suggests": [ + "testthat", + "covr" + ], + "License": "GPL", + "URL": "https://github.com/RobinHankin/partitions", + "BugReports": "https://github.com/RobinHankin/partitions/issues", + "RdMacros": "Rdpack", + "NeedsCompilation": "yes", + "Author": "Robin K. S. Hankin [aut, cre] (), Paul Egeler [ctb] ()", + "Repository": "CRAN" }, "party": { "Package": "party", "Version": "1.3-18", "Source": "Repository", - "Requirements": [ - "coin", - "grid", + "Title": "A Laboratory for Recursive Partytioning", + "Date": "2025-01-29", + "Authors@R": "c(person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")), person(\"Kurt\", \"Hornik\", role = \"aut\", email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Carolin\", \"Strobl\", role = \"aut\", email = \"carolin.strobl@psychologie.uzh.ch\", comment = c(ORCID = \"0000-0003-0952-3230\")), person(\"Achim\", \"Zeileis\", role = \"aut\", email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")))", + "Description": "A computational toolbox for recursive partitioning. The core of the package is ctree(), an implementation of conditional inference trees which embed tree-structured regression models into a well defined theory of conditional inference procedures. This non-parametric class of regression trees is applicable to all kinds of regression problems, including nominal, ordinal, numeric, censored as well as multivariate response variables and arbitrary measurement scales of the covariates. Based on conditional inference trees, cforest() provides an implementation of Breiman's random forests. The function mob() implements an algorithm for recursive partitioning based on parametric models (e.g. linear models, GLMs or survival regression) employing parameter instability tests for split selection. Extensible functionality for visualizing tree-structured regression models is available. The methods are described in Hothorn et al. (2006) , Zeileis et al. (2008) and Strobl et al. (2007) .", + "Depends": [ + "R (>= 3.0.0)", "methods", - "modeltools", - "mvtnorm", - "R", - "sandwich", + "grid", "stats", - "strucchange", - "survival", - "zoo" - ] + "mvtnorm (>= 1.0-2)", + "modeltools (>= 0.2-21)", + "strucchange" + ], + "LinkingTo": [ + "mvtnorm" + ], + "Imports": [ + "survival (>= 2.37-7)", + "coin (>= 1.1-0)", + "zoo", + "sandwich (>= 1.1-1)" + ], + "Suggests": [ + "TH.data (>= 1.0-3)", + "mlbench", + "colorspace", + "MASS", + "vcd", + "ipred", + "varImp", + "randomForest", + "lattice", + "AER" + ], + "LazyData": "yes", + "License": "GPL-2", + "URL": "http://party.R-forge.R-project.org", + "NeedsCompilation": "yes", + "Author": "Torsten Hothorn [aut, cre] (), Kurt Hornik [aut] (), Carolin Strobl [aut] (), Achim Zeileis [aut] ()", + "Maintainer": "Torsten Hothorn ", + "Repository": "CRAN" }, "patchwork": { "Package": "patchwork", "Version": "1.3.2", "Source": "Repository", - "Requirements": [ - "cli", - "farver", - "ggplot2", - "graphics", - "grDevices", + "Type": "Package", + "Title": "The Composer of Plots", + "Authors@R": "person(given = \"Thomas Lin\", family = \"Pedersen\", role = c(\"cre\", \"aut\"), email = \"thomasp85@gmail.com\", comment = c(ORCID = \"0000-0002-5147-4711\"))", + "Maintainer": "Thomas Lin Pedersen ", + "Description": "The 'ggplot2' package provides a strong API for sequentially building up a plot, but does not concern itself with composition of multiple plots. 'patchwork' is a package that expands the API to allow for arbitrarily complex composition of plots by, among others, providing mathematical operators for combining multiple plots. Other packages that try to address this need (but with a different approach) are 'gridExtra' and 'cowplot'.", + "License": "MIT + file LICENSE", + "Encoding": "UTF-8", + "Imports": [ + "ggplot2 (>= 3.0.0)", + "gtable (>= 0.3.6)", "grid", - "gtable", - "rlang", "stats", - "utils" - ] + "grDevices", + "utils", + "graphics", + "rlang (>= 1.0.0)", + "cli", + "farver" + ], + "RoxygenNote": "7.3.2", + "URL": "https://patchwork.data-imaginist.com, https://github.com/thomasp85/patchwork", + "BugReports": "https://github.com/thomasp85/patchwork/issues", + "Suggests": [ + "knitr", + "rmarkdown", + "gridGraphics", + "gridExtra", + "ragg", + "testthat (>= 2.1.0)", + "vdiffr", + "covr", + "png", + "gt (>= 0.11.0)" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "gifski", + "NeedsCompilation": "no", + "Author": "Thomas Lin Pedersen [cre, aut] (ORCID: )", + "Repository": "CRAN" }, "pbapply": { "Package": "pbapply", "Version": "1.7-4", "Source": "Repository", - "Requirements": [ - "parallel", - "R" - ] + "Type": "Package", + "Title": "Adding Progress Bar to '*apply' Functions", + "Date": "2025-07-19", + "Authors@R": "c(person(given = \"Peter\", family = \"Solymos\", comment = c(ORCID = \"0000-0001-7337-1740\"), role = c(\"aut\", \"cre\"), email = \"psolymos@gmail.com\"), person(given = \"Zygmunt\", family = \"Zawadzki\", role = \"aut\", email = \"zygmunt@zstat.pl\"), person(given = \"Henrik\", family = \"Bengtsson\", role = \"ctb\", email = \"henrikb@braju.com\"), person(\"R Core Team\", role = c(\"cph\", \"ctb\")))", + "Maintainer": "Peter Solymos ", + "Description": "A lightweight package that adds progress bar to vectorized R functions ('*apply'). The implementation can easily be added to functions where showing the progress is useful (e.g. bootstrap). The type and style of the progress bar (with percentages or remaining time) can be set through options. Supports several parallel processing backends including mirai and future.", + "Depends": [ + "R (>= 3.2.0)" + ], + "Imports": [ + "parallel" + ], + "Suggests": [ + "shiny", + "future", + "future.apply" + ], + "License": "GPL (>= 2)", + "URL": "https://github.com/psolymos/pbapply, https://peter.solymos.org/pbapply/", + "BugReports": "https://github.com/psolymos/pbapply/issues", + "NeedsCompilation": "no", + "Author": "Peter Solymos [aut, cre] (ORCID: ), Zygmunt Zawadzki [aut], Henrik Bengtsson [ctb], R Core Team [cph, ctb]", + "Repository": "CRAN" }, "pbkrtest": { "Package": "pbkrtest", "Version": "0.5.5", "Source": "Repository", - "Requirements": [ + "Title": "Parametric Bootstrap, Kenward-Roger and Satterthwaite Based Methods for Test in Mixed Models", + "Authors@R": "c( person(given = \"Ulrich\", family = \"Halekoh\", email = \"uhalekoh@health.sdu.dk\", role = c(\"aut\", \"cph\")), person(given = \"Søren\", family = \"Højsgaard\", email = \"sorenh@math.aau.dk\", role = c(\"aut\", \"cre\", \"cph\")) )", + "Maintainer": "Søren Højsgaard ", + "Description": "Computes p-values based on (a) Satterthwaite or Kenward-Rogers degree of freedom methods and (b) parametric bootstrap for mixed effects models as implemented in the 'lme4' package. Implements parametric bootstrap test for generalized linear mixed models as implemented in 'lme4' and generalized linear models. The package is documented in the paper by Halekoh and Højsgaard, (2012, ). Please see 'citation(\"pbkrtest\")' for citation details.", + "URL": "https://people.math.aau.dk/~sorenh/software/pbkrtest/", + "Depends": [ + "R (>= 4.2.0)", + "lme4 (>= 1.1.31)" + ], + "Imports": [ "broom", - "doBy", "dplyr", - "lme4", "MASS", - "Matrix", "methods", "numDeriv", - "R" - ] + "Matrix (>= 1.2.3)", + "doBy (>= 4.6.22)" + ], + "Suggests": [ + "nlme", + "markdown", + "knitr" + ], + "Encoding": "UTF-8", + "VignetteBuilder": "knitr", + "License": "GPL (>= 2)", + "ByteCompile": "Yes", + "RoxygenNote": "7.3.2", + "LazyData": "true", + "NeedsCompilation": "no", + "Author": "Ulrich Halekoh [aut, cph], Søren Højsgaard [aut, cre, cph]", + "Repository": "CRAN" }, "pillar": { "Package": "pillar", @@ -2826,14 +5983,40 @@ "Package": "pkgbuild", "Version": "1.4.8", "Source": "Repository", - "Requirements": [ - "callr", - "cli", + "Title": "Find Tools Needed to Build R Packages", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Description": "Provides functions used to build R packages. Locates compilers needed to build R packages on various platforms and ensures the PATH is configured appropriately so R can use them.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/r-lib/pkgbuild, https://pkgbuild.r-lib.org", + "BugReports": "https://github.com/r-lib/pkgbuild/issues", + "Depends": [ + "R (>= 3.5)" + ], + "Imports": [ + "callr (>= 3.2.0)", + "cli (>= 3.4.0)", "desc", "processx", - "R", "R6" - ] + ], + "Suggests": [ + "covr", + "cpp11", + "knitr", + "Rcpp", + "rmarkdown", + "testthat (>= 3.2.0)", + "withr (>= 2.3.0)" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-30", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut], Jim Hester [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" }, "pkgconfig": { "Package": "pkgconfig", @@ -2859,124 +6042,414 @@ "NeedsCompilation": "no", "Repository": "CRAN" }, + "pkgload": { + "Package": "pkgload", + "Version": "1.5.0", + "Source": "Repository", + "Title": "Simulate Package Installation and Attach", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Core team\", role = \"ctb\", comment = \"Some namespace and vignette code extracted from base R\") )", + "Description": "Simulates the process of installing a package and then attaching it. This is a key part of the 'devtools' package as it allows you to rapidly iterate while developing a package.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/r-lib/pkgload, https://pkgload.r-lib.org", + "BugReports": "https://github.com/r-lib/pkgload/issues", + "Depends": [ + "R (>= 3.4.0)" + ], + "Imports": [ + "cli (>= 3.3.0)", + "desc", + "fs", + "glue", + "lifecycle", + "methods", + "pkgbuild", + "processx", + "rlang (>= 1.1.1)", + "rprojroot", + "utils" + ], + "Suggests": [ + "bitops", + "jsonlite", + "mathjaxr", + "pak", + "Rcpp", + "remotes", + "rstudioapi", + "testthat (>= 3.2.1.1)", + "usethis", + "withr" + ], + "Config/Needs/website": "tidyverse/tidytemplate, ggplot2", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "TRUE", + "Config/testthat/start-first": "dll", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut], Winston Chang [aut], Jim Hester [aut], Lionel Henry [aut, cre], Posit Software, PBC [cph, fnd], R Core team [ctb] (Some namespace and vignette code extracted from base R)", + "Maintainer": "Lionel Henry ", + "Repository": "CRAN" + }, "plotly": { "Package": "plotly", "Version": "4.11.0", "Source": "Repository", - "Requirements": [ - "base64enc", - "crosstalk", - "data.table", - "digest", - "dplyr", - "ggplot2", - "htmltools", - "htmlwidgets", - "httr", - "jsonlite", - "lazyeval", + "Title": "Create Interactive Web Graphics via 'plotly.js'", + "Authors@R": "c(person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"cpsievert1@gmail.com\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Chris\", \"Parmer\", role = \"aut\", email = \"chris@plot.ly\"), person(\"Toby\", \"Hocking\", role = \"aut\", email = \"tdhock5@gmail.com\"), person(\"Scott\", \"Chamberlain\", role = \"aut\", email = \"myrmecocystus@gmail.com\"), person(\"Karthik\", \"Ram\", role = \"aut\", email = \"karthik.ram@gmail.com\"), person(\"Marianne\", \"Corvellec\", role = \"aut\", email = \"marianne.corvellec@igdore.org\", comment = c(ORCID = \"0000-0002-1994-3581\")), person(\"Pedro\", \"Despouy\", role = \"aut\", email = \"pedro@plot.ly\"), person(\"Salim\", \"Brüggemann\", role = \"ctb\", email = \"salim-b@pm.me\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Plotly Technologies Inc.\", role = \"cph\"))", + "License": "MIT + file LICENSE", + "Description": "Create interactive web graphics from 'ggplot2' graphs and/or a custom interface to the (MIT-licensed) JavaScript library 'plotly.js' inspired by the grammar of graphics.", + "URL": "https://plotly-r.com, https://github.com/plotly/plotly.R, https://plotly.com/r/", + "BugReports": "https://github.com/plotly/plotly.R/issues", + "Depends": [ + "R (>= 3.2.0)", + "ggplot2 (>= 3.0.0)" + ], + "Imports": [ + "tools", + "scales", + "httr (>= 1.3.0)", + "jsonlite (>= 1.6)", "magrittr", - "promises", - "purrr", - "R", + "digest", + "viridisLite", + "base64enc", + "htmltools (>= 0.3.6)", + "htmlwidgets (>= 1.5.2.9001)", + "tidyr (>= 1.0.0)", "RColorBrewer", - "rlang", - "scales", - "tibble", - "tidyr", - "tools", + "dplyr", "vctrs", - "viridisLite" - ] + "tibble", + "lazyeval (>= 0.2.0)", + "rlang (>= 1.0.0)", + "crosstalk", + "purrr", + "data.table", + "promises" + ], + "Suggests": [ + "MASS", + "maps", + "hexbin", + "ggthemes", + "GGally", + "ggalluvial", + "testthat", + "knitr", + "shiny (>= 1.1.0)", + "shinytest2", + "curl", + "rmarkdown", + "Cairo", + "broom", + "webshot", + "listviewer", + "dendextend", + "sf", + "png", + "IRdisplay", + "processx", + "plotlyGeoAssets", + "forcats", + "withr", + "palmerpenguins", + "rversions", + "reticulate", + "rsvg", + "ggridges" + ], + "LazyData": "true", + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "Config/Needs/check": "tidyverse/ggplot2, ggobi/GGally, rcmdcheck, devtools, reshape2, s2", + "NeedsCompilation": "no", + "Author": "Carson Sievert [aut, cre] (ORCID: ), Chris Parmer [aut], Toby Hocking [aut], Scott Chamberlain [aut], Karthik Ram [aut], Marianne Corvellec [aut] (ORCID: ), Pedro Despouy [aut], Salim Brüggemann [ctb] (ORCID: ), Plotly Technologies Inc. [cph]", + "Maintainer": "Carson Sievert ", + "Repository": "CRAN" }, "plotrix": { "Package": "plotrix", "Version": "3.8-13", "Source": "Repository", - "Requirements": [ - "graphics", + "Title": "Various Plotting Functions", + "Authors@R": "c( person(\"Jim\", \"Lemon\", role = \"aut\"), person(\"Ben\", \"Bolker\", role = \"ctb\"), person(\"Sander\", \"Oom\", role = \"ctb\"), person(\"Eduardo\", \"Klein\", role = \"ctb\"), person(\"Barry\", \"Rowlingson\", role = \"ctb\"), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Anupam\", \"Tyagi\", role = \"ctb\"), person(\"Olivier\", \"Eterradossi\", role = \"ctb\"), person(\"Gabor\", \"Grothendieck\", role = \"ctb\"), person(\"Michael\", \"Toews\", role = \"ctb\"), person(\"John\", \"Kane\", role = \"ctb\"), person(\"Rolf\", \"Turner\", role = \"ctb\"), person(\"Carl\", \"Witthoft\", role = \"ctb\"), person(\"Julian\", \"Stander\", role = \"ctb\"), person(\"Thomas\", \"Petzoldt\", role = \"ctb\"), person(\"Remko\", \"Duursma\", role = \"ctb\"), person(\"Elisa\", \"Biancotto\", role = \"ctb\"), person(\"Ofir\", \"Levy\", role = \"ctb\"), person(\"Christophe\", \"Dutang\", role = \"ctb\"), person(\"Peter\", \"Solymos\", role = \"ctb\"), person(\"Robby\", \"Engelmann\", role = \"ctb\"), person(\"Michael\", \"Hecker\", role = \"ctb\"), person(\"Felix\", \"Steinbeck\", role = \"ctb\"), person(\"Hans\", \"Borchers\", role = \"ctb\"), person(\"Henrik\", \"Singmann\", role = \"ctb\"), person(\"Ted\", \"Toal\", role = \"ctb\"), person(\"Derek\", \"Ogle\", role = \"ctb\"), person(\"Darshan\", \"Baral\", role = \"ctb\"), person(\"Ulrike\", \"Groemping\", role = \"ctb\"), person(\"Bill\", \"Venables\", role = \"ctb\"), person(family = \"The CRAN Team\", role = \"ctb\"), person(\"Duncan\", \"Murdoch\", email = \"murdoch.duncan@gmail.com\", role = c(\"ctb\", \"cre\")))", + "Imports": [ "grDevices", - "R", + "graphics", "stats", "utils" - ] + ], + "Description": "Lots of plots, various labeling, axis and color scaling functions. The author/maintainer died in September 2023.", + "License": "GPL (>= 2)", + "NeedsCompilation": "no", + "Depends": [ + "R (>= 3.5.0)" + ], + "Repository": "CRAN", + "URL": "https://plotrix.github.io/plotrix/, https://github.com/plotrix/plotrix", + "BugReports": "https://github.com/plotrix/plotrix/issues", + "Author": "Jim Lemon [aut], Ben Bolker [ctb], Sander Oom [ctb], Eduardo Klein [ctb], Barry Rowlingson [ctb], Hadley Wickham [ctb], Anupam Tyagi [ctb], Olivier Eterradossi [ctb], Gabor Grothendieck [ctb], Michael Toews [ctb], John Kane [ctb], Rolf Turner [ctb], Carl Witthoft [ctb], Julian Stander [ctb], Thomas Petzoldt [ctb], Remko Duursma [ctb], Elisa Biancotto [ctb], Ofir Levy [ctb], Christophe Dutang [ctb], Peter Solymos [ctb], Robby Engelmann [ctb], Michael Hecker [ctb], Felix Steinbeck [ctb], Hans Borchers [ctb], Henrik Singmann [ctb], Ted Toal [ctb], Derek Ogle [ctb], Darshan Baral [ctb], Ulrike Groemping [ctb], Bill Venables [ctb], The CRAN Team [ctb], Duncan Murdoch [ctb, cre]", + "Maintainer": "Duncan Murdoch " }, "plyr": { "Package": "plyr", "Version": "1.8.9", "Source": "Repository", - "Requirements": [ - "R", + "Title": "Tools for Splitting, Applying and Combining Data", + "Authors@R": "person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\"))", + "Description": "A set of tools that solves a common set of problems: you need to break a big problem down into manageable pieces, operate on each piece and then put all the pieces back together. For example, you might want to fit a model to each spatial location or time point in your study, summarise data by panels or collapse high-dimensional arrays to simpler summary statistics. The development of 'plyr' has been generously supported by 'Becton Dickinson'.", + "License": "MIT + file LICENSE", + "URL": "http://had.co.nz/plyr, https://github.com/hadley/plyr", + "BugReports": "https://github.com/hadley/plyr/issues", + "Depends": [ + "R (>= 3.1.0)" + ], + "Imports": [ + "Rcpp (>= 0.11.0)" + ], + "Suggests": [ + "abind", + "covr", + "doParallel", + "foreach", + "iterators", + "itertools", + "tcltk", + "testthat" + ], + "LinkingTo": [ "Rcpp" - ] + ], + "Encoding": "UTF-8", + "LazyData": "true", + "RoxygenNote": "7.2.3", + "NeedsCompilation": "yes", + "Author": "Hadley Wickham [aut, cre]", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" }, "png": { "Package": "png", "Version": "0.1-8", "Source": "Repository", - "Requirements": [ - "R" - ] + "Title": "Read and write PNG images", + "Author": "Simon Urbanek ", + "Maintainer": "Simon Urbanek ", + "Depends": [ + "R (>= 2.9.0)" + ], + "Description": "This package provides an easy and simple way to read, write and display bitmap images stored in the PNG format. It can read and write both files and in-memory raw vectors.", + "License": "GPL-2 | GPL-3", + "SystemRequirements": "libpng", + "URL": "http://www.rforge.net/png/", + "NeedsCompilation": "yes", + "Repository": "CRAN" }, "polynom": { "Package": "polynom", "Version": "1.4-1", "Source": "Repository", - "Requirements": [ - "graphics", - "stats" - ] + "Title": "A Collection of Functions to Implement a Class for Univariate Polynomial Manipulations", + "Authors@R": "c(person(\"Bill\", \"Venables\", role = c(\"aut\", \"cre\"), email = \"Bill.Venables@gmail.com\", comment = \"S original\"), person(\"Kurt\", \"Hornik\", role = \"aut\", email = \"Kurt.Hornik@R-project.org\", comment = \"R port\"), person(\"Martin\", \"Maechler\", role = \"aut\", email = \"maechler@stat.math.ethz.ch\", comment = \"R port\"))", + "Description": "A collection of functions to implement a class for univariate polynomial manipulations.", + "Imports": [ + "stats", + "graphics" + ], + "License": "GPL-2", + "NeedsCompilation": "no", + "Author": "Bill Venables [aut, cre] (S original), Kurt Hornik [aut] (R port), Martin Maechler [aut] (R port)", + "Maintainer": "Bill Venables ", + "Suggests": [ + "knitr", + "rmarkdown" + ], + "VignetteBuilder": "knitr", + "Repository": "CRAN" + }, + "praise": { + "Package": "praise", + "Version": "1.0.0", + "Source": "Repository", + "Title": "Praise Users", + "Author": "Gabor Csardi, Sindre Sorhus", + "Maintainer": "Gabor Csardi ", + "Description": "Build friendly R packages that praise their users if they have done something good, or they just need it to feel better.", + "License": "MIT + file LICENSE", + "LazyData": "true", + "URL": "https://github.com/gaborcsardi/praise", + "BugReports": "https://github.com/gaborcsardi/praise/issues", + "Suggests": [ + "testthat" + ], + "Collate": "'adjective.R' 'adverb.R' 'exclamation.R' 'verb.R' 'rpackage.R' 'package.R'", + "NeedsCompilation": "no", + "Repository": "CRAN" }, "processx": { "Package": "processx", "Version": "3.8.6", "Source": "Repository", - "Requirements": [ - "ps", - "R", + "Title": "Execute and Control System Processes", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\")) )", + "Description": "Tools to run system processes in the background. It can check if a background process is running; wait on a background process to finish; get the exit status of finished processes; kill background processes. It can read the standard output and error of the processes, using non-blocking connections. 'processx' can poll a process for standard output or error, with a timeout. It can also poll several processes at once.", + "License": "MIT + file LICENSE", + "URL": "https://processx.r-lib.org, https://github.com/r-lib/processx", + "BugReports": "https://github.com/r-lib/processx/issues", + "Depends": [ + "R (>= 3.4.0)" + ], + "Imports": [ + "ps (>= 1.2.0)", "R6", "utils" - ] + ], + "Suggests": [ + "callr (>= 3.7.3)", + "cli (>= 3.3.0)", + "codetools", + "covr", + "curl", + "debugme", + "parallel", + "rlang (>= 1.0.2)", + "testthat (>= 3.0.0)", + "webfakes", + "withr" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.1.9000", + "NeedsCompilation": "yes", + "Author": "Gábor Csárdi [aut, cre, cph] (), Winston Chang [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph, fnd]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" }, "promises": { "Package": "promises", "Version": "1.5.0", "Source": "Repository", - "Requirements": [ - "fastmap", + "Type": "Package", + "Title": "Abstractions for Promise-Based Asynchronous Programming", + "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Barret\", \"Schloerke\", , \"barret@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Charlie\", \"Gao\", , \"charlie.gao@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-0750-061X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Description": "Provides fundamental abstractions for doing asynchronous programming in R using promises. Asynchronous programming is useful for allowing a single R process to orchestrate multiple tasks in the background while also attending to something else. Semantics are similar to 'JavaScript' promises, but with a syntax that is idiomatic R.", + "License": "MIT + file LICENSE", + "URL": "https://rstudio.github.io/promises/, https://github.com/rstudio/promises", + "BugReports": "https://github.com/rstudio/promises/issues", + "Depends": [ + "R (>= 4.1.0)" + ], + "Imports": [ + "fastmap (>= 1.1.0)", "later", "lifecycle", - "magrittr", - "otel", - "R", + "magrittr (>= 1.5)", + "otel (>= 0.2.0)", "R6", "rlang" - ] + ], + "Suggests": [ + "future (>= 1.21.0)", + "knitr", + "mirai", + "otelsdk (>= 0.2.0)", + "purrr", + "Rcpp", + "rmarkdown", + "spelling", + "testthat (>= 3.0.0)", + "vembedr" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "rsconnect, tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-05-27", + "Encoding": "UTF-8", + "Language": "en-US", + "RoxygenNote": "7.3.3", + "NeedsCompilation": "no", + "Author": "Joe Cheng [aut], Barret Schloerke [aut, cre] (ORCID: ), Winston Chang [aut] (ORCID: ), Charlie Gao [aut] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Barret Schloerke ", + "Repository": "CRAN" }, "ps": { "Package": "ps", "Version": "1.9.1", "Source": "Repository", - "Requirements": [ - "R", + "Title": "List, Query, Manipulate System Processes", + "Authors@R": "c( person(\"Jay\", \"Loden\", role = \"aut\"), person(\"Dave\", \"Daeschler\", role = \"aut\"), person(\"Giampaolo\", \"Rodola'\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "List, query and manipulate all system processes, on 'Windows', 'Linux' and 'macOS'.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/r-lib/ps, https://ps.r-lib.org/", + "BugReports": "https://github.com/r-lib/ps/issues", + "Depends": [ + "R (>= 3.4)" + ], + "Imports": [ "utils" - ] + ], + "Suggests": [ + "callr", + "covr", + "curl", + "pillar", + "pingr", + "processx (>= 3.1.0)", + "R6", + "rlang", + "testthat (>= 3.0.0)", + "webfakes", + "withr" + ], + "Biarch": "true", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "yes", + "Author": "Jay Loden [aut], Dave Daeschler [aut], Giampaolo Rodola' [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" }, "psych": { "Package": "psych", "Version": "2.5.6", "Source": "Repository", - "Requirements": [ - "GPArotation", + "Date": "2025-06-20", + "Title": "Procedures for Psychological, Psychometric, and Personality Research", + "Authors@R": "person(\"William\", \"Revelle\", role =c(\"aut\",\"cre\"), email=\"revelle@northwestern.edu\", comment=c(ORCID = \"0000-0003-4880-9610\") )", + "Description": "A general purpose toolbox developed originally for personality, psychometric theory and experimental psychology. Functions are primarily for multivariate analysis and scale construction using factor analysis, principal component analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for analyzing data at multiple levels include within and between group statistics, including correlations and factor analysis. Validation and cross validation of scales developed using basic machine learning algorithms are provided, as are functions for simulating and testing particular item and test structures. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, including mediation models, factor analysis and structural equation models are created using basic graphics. Some of the functions are written to support a book on psychometric theory as well as publications in personality research. For more information, see the web page.", + "License": "GPL (>= 2)", + "Imports": [ + "mnormt", + "parallel", + "stats", "graphics", "grDevices", - "lattice", "methods", - "mnormt", + "lattice", "nlme", - "parallel", - "stats" - ] + "GPArotation" + ], + "Suggests": [ + "psychTools", + "lavaan", + "lme4", + "Rcsdp", + "graph", + "knitr", + "Rgraphviz" + ], + "LazyData": "yes", + "ByteCompile": "true", + "VignetteBuilder": "knitr", + "URL": "https://personality-project.org/r/psych/ https://personality-project.org/r/psych-manual.pdf", + "NeedsCompilation": "no", + "Author": "William Revelle [aut, cre] (ORCID: )", + "Maintainer": "William Revelle ", + "Repository": "CRAN" }, "purrr": { "Package": "purrr", @@ -3031,13 +6504,32 @@ "Package": "qcc", "Version": "2.7", "Source": "Repository", - "Requirements": [ - "graphics", - "grDevices", + "Date": "2017-07-09", + "Title": "Quality Control Charts", + "Description": "Shewhart quality control charts for continuous, attribute and count data. Cusum and EWMA charts. Operating characteristic curves. Process capability analysis. Pareto chart and cause-and-effect chart. Multivariate control charts.", + "Authors@R": "c(person(\"Luca\", \"Scrucca\", role = c(\"aut\", \"cre\"), email = \"luca.scrucca@unipg.it\"), person(\"Greg\", \"Snow\", role = \"ctb\", email = \"greg.snow@ihc.com\"), person(\"Peter\", \"Bloomfield\", role = \"ctb\", email = \"Peter_Bloomfield@ncsu.edu\"))", + "Depends": [ + "R (>= 3.0)" + ], + "Imports": [ "MASS", - "R", - "utils" - ] + "utils", + "graphics", + "grDevices" + ], + "Suggests": [ + "knitr (>= 1.12)", + "rmarkdown (>= 0.9)" + ], + "License": "GPL (>= 2)", + "VignetteBuilder": "knitr", + "URL": "https://github.com/luca-scr/qcc", + "Repository": "CRAN", + "ByteCompile": "true", + "LazyLoad": "yes", + "NeedsCompilation": "no", + "Author": "Luca Scrucca [aut, cre], Greg Snow [ctb], Peter Bloomfield [ctb]", + "Maintainer": "Luca Scrucca " }, "quadprog": { "Package": "quadprog", @@ -3060,69 +6552,321 @@ "Package": "quantmod", "Version": "0.4.28", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Quantitative Financial Modelling Framework", + "Authors@R": "c( person(given=c(\"Jeffrey\",\"A.\"), family=\"Ryan\", role=c(\"aut\",\"cph\")), person(given=c(\"Joshua\",\"M.\"), family=\"Ulrich\", role=c(\"cre\",\"aut\"), email=\"josh.m.ulrich@gmail.com\"), person(given=c(\"Ethan\",\"B.\"), family=\"Smith\", role=\"ctb\"), person(given=\"Wouter\", family=\"Thielen\", role=\"ctb\"), person(given=\"Paul\", family=\"Teetor\", role=\"ctb\"), person(given=\"Steve\", family=\"Bronder\", role=\"ctb\") )", + "Depends": [ + "R (>= 3.2.0)", + "xts(>= 0.9-0)", + "zoo", + "TTR(>= 0.2)", + "methods" + ], + "Imports": [ "curl", - "jsonlite", - "methods", - "R", - "TTR", - "xts", - "zoo" - ] + "jsonlite(>= 1.1)" + ], + "Suggests": [ + "DBI", + "RMySQL", + "RSQLite", + "timeSeries", + "xml2", + "downloader", + "tinytest" + ], + "Description": "Specify, build, trade, and analyse quantitative financial trading strategies.", + "LazyLoad": "yes", + "License": "GPL-3", + "URL": "https://www.quantmod.com/, https://github.com/joshuaulrich/quantmod", + "BugReports": "https://github.com/joshuaulrich/quantmod/issues", + "NeedsCompilation": "no", + "Author": "Jeffrey A. Ryan [aut, cph], Joshua M. Ulrich [cre, aut], Ethan B. Smith [ctb], Wouter Thielen [ctb], Paul Teetor [ctb], Steve Bronder [ctb]", + "Maintainer": "Joshua M. Ulrich ", + "Repository": "CRAN" }, "quantreg": { "Package": "quantreg", "Version": "6.1", "Source": "Repository", - "Requirements": [ + "Title": "Quantile Regression", + "Description": "Estimation and inference methods for models for conditional quantile functions: Linear and nonlinear parametric and non-parametric (total variation penalized) models for conditional quantiles of a univariate response and several methods for handling censored survival data. Portfolio selection methods based on expected shortfall risk are also now included. See Koenker, R. (2005) Quantile Regression, Cambridge U. Press, and Koenker, R. et al. (2017) Handbook of Quantile Regression, CRC Press, .", + "Authors@R": "c( person(\"Roger\", \"Koenker\", role = c(\"cre\",\"aut\"), email = \"rkoenker@illinois.edu\"), person(\"Stephen\", \"Portnoy\", role = c(\"ctb\"), comment = \"Contributions to Censored QR code\", email = \"sportnoy@illinois.edu\"), person(c(\"Pin\", \"Tian\"), \"Ng\", role = c(\"ctb\"), comment = \"Contributions to Sparse QR code\", email = \"pin.ng@nau.edu\"), person(\"Blaise\", \"Melly\", role = c(\"ctb\"), comment = \"Contributions to preprocessing code\", email = \"mellyblaise@gmail.com\"), person(\"Achim\", \"Zeileis\", role = c(\"ctb\"), comment = \"Contributions to dynrq code essentially identical to his dynlm code\", email = \"Achim.Zeileis@uibk.ac.at\"), person(\"Philip\", \"Grosjean\", role = c(\"ctb\"), comment = \"Contributions to nlrq code\", email = \"phgrosjean@sciviews.org\"), person(\"Cleve\", \"Moler\", role = c(\"ctb\"), comment = \"author of several linpack routines\"), person(\"Yousef\", \"Saad\", role = c(\"ctb\"), comment = \"author of sparskit2\"), person(\"Victor\", \"Chernozhukov\", role = c(\"ctb\"), comment = \"contributions to extreme value inference code\"), person(\"Ivan\", \"Fernandez-Val\", role = c(\"ctb\"), comment = \"contributions to extreme value inference code\"), person(\"Martin\", \"Maechler\", role = \"ctb\", comment = c(\"tweaks (src/chlfct.f, 'tiny','Large')\", ORCID = \"0000-0002-8685-9910\")), person(c(\"Brian\", \"D\"), \"Ripley\", role = c(\"trl\",\"ctb\"), comment = \"Initial (2001) R port from S (to my everlasting shame -- how could I have been so slow to adopt R!) and for numerous other suggestions and useful advice\", email = \"ripley@stats.ox.ac.uk\"))", + "Maintainer": "Roger Koenker ", + "Repository": "CRAN", + "Depends": [ + "R (>= 3.5)", + "stats", + "SparseM" + ], + "Imports": [ + "methods", "graphics", - "MASS", "Matrix", "MatrixModels", - "methods", - "R", - "SparseM", - "stats", - "survival" - ] + "survival", + "MASS" + ], + "Suggests": [ + "interp", + "rgl", + "logspline", + "nor1mix", + "Formula", + "zoo", + "R.rsp", + "conquer" + ], + "License": "GPL (>= 2)", + "URL": "https://www.r-project.org", + "NeedsCompilation": "yes", + "VignetteBuilder": "R.rsp", + "Author": "Roger Koenker [cre, aut], Stephen Portnoy [ctb] (Contributions to Censored QR code), Pin Tian Ng [ctb] (Contributions to Sparse QR code), Blaise Melly [ctb] (Contributions to preprocessing code), Achim Zeileis [ctb] (Contributions to dynrq code essentially identical to his dynlm code), Philip Grosjean [ctb] (Contributions to nlrq code), Cleve Moler [ctb] (author of several linpack routines), Yousef Saad [ctb] (author of sparskit2), Victor Chernozhukov [ctb] (contributions to extreme value inference code), Ivan Fernandez-Val [ctb] (contributions to extreme value inference code), Martin Maechler [ctb] (tweaks (src/chlfct.f, 'tiny','Large'), ), Brian D Ripley [trl, ctb] (Initial (2001) R port from S (to my everlasting shame -- how could I have been so slow to adopt R!) and for numerous other suggestions and useful advice)" }, "ragg": { "Package": "ragg", "Version": "1.5.0", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Graphic Devices Based on AGG", + "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Maxim\", \"Shemanarev\", role = c(\"aut\", \"cph\"), comment = \"Author of AGG\"), person(\"Tony\", \"Juricic\", , \"tonygeek@yahoo.com\", role = c(\"ctb\", \"cph\"), comment = \"Contributor to AGG\"), person(\"Milan\", \"Marusinec\", , \"milan@marusinec.sk\", role = c(\"ctb\", \"cph\"), comment = \"Contributor to AGG\"), person(\"Spencer\", \"Garrett\", role = \"ctb\", comment = \"Contributor to AGG\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Maintainer": "Thomas Lin Pedersen ", + "Description": "Anti-Grain Geometry (AGG) is a high-quality and high-performance 2D drawing library. The 'ragg' package provides a set of graphic devices based on AGG to use as alternative to the raster devices provided through the 'grDevices' package.", + "License": "MIT + file LICENSE", + "URL": "https://ragg.r-lib.org, https://github.com/r-lib/ragg", + "BugReports": "https://github.com/r-lib/ragg/issues", + "Imports": [ + "systemfonts (>= 1.0.3)", + "textshaping (>= 0.3.0)" + ], + "Suggests": [ + "covr", + "graphics", + "grid", + "testthat (>= 3.0.0)" + ], + "LinkingTo": [ "systemfonts", "textshaping" - ] + ], + "Config/build/compilation-database": "true", + "Config/Needs/website": "ggplot2, devoid, magick, bench, tidyr, ggridges, hexbin, sessioninfo, pkgdown, tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-25", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "SystemRequirements": "freetype2, libpng, libtiff, libjpeg, libwebp, libwebpmux", + "NeedsCompilation": "yes", + "Author": "Thomas Lin Pedersen [cre, aut] (ORCID: ), Maxim Shemanarev [aut, cph] (Author of AGG), Tony Juricic [ctb, cph] (Contributor to AGG), Milan Marusinec [ctb, cph] (Contributor to AGG), Spencer Garrett [ctb] (Contributor to AGG), Posit Software, PBC [cph, fnd] (ROR: )", + "Repository": "CRAN" }, "rappdirs": { "Package": "rappdirs", "Version": "0.3.4", "Source": "Repository", - "Requirements": [ - "R" - ] + "Type": "Package", + "Title": "Application Directories: Determine Where to Save Data, Caches, and Logs", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"trl\", \"cre\", \"cph\")), person(\"Sridhar\", \"Ratnakumar\", role = \"aut\"), person(\"Trent\", \"Mick\", role = \"aut\"), person(\"ActiveState\", role = \"cph\", comment = \"R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs\"), person(\"Eddy\", \"Petrisor\", role = \"ctb\"), person(\"Trevor\", \"Davis\", role = c(\"trl\", \"aut\"), comment = c(ORCID = \"0000-0001-6341-4639\")), person(\"Gabor\", \"Csardi\", role = \"ctb\"), person(\"Gregory\", \"Jefferis\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Description": "An easy way to determine which directories on the users computer you should use to save data, caches and logs. A port of Python's 'Appdirs' () to R.", + "License": "MIT + file LICENSE", + "URL": "https://rappdirs.r-lib.org, https://github.com/r-lib/rappdirs", + "BugReports": "https://github.com/r-lib/rappdirs/issues", + "Depends": [ + "R (>= 4.1)" + ], + "Suggests": [ + "covr", + "roxygen2", + "testthat (>= 3.2.0)", + "withr" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-05-05", + "Copyright": "Original python appdirs module copyright (c) 2010 ActiveState Software Inc. R port copyright Hadley Wickham, Posit, PBC. See file LICENSE for details.", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "NeedsCompilation": "yes", + "Author": "Hadley Wickham [trl, cre, cph], Sridhar Ratnakumar [aut], Trent Mick [aut], ActiveState [cph] (R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs), Eddy Petrisor [ctb], Trevor Davis [trl, aut] (ORCID: ), Gabor Csardi [ctb], Gregory Jefferis [ctb], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" + }, + "rbibutils": { + "Package": "rbibutils", + "Version": "2.4", + "Source": "Repository", + "Type": "Package", + "Title": "Read 'Bibtex' Files and Convert Between Bibliography Formats", + "Authors@R": "c( person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\", role = c(\"aut\", \"cre\"), \t email = \"georgi.boshnakov@manchester.ac.uk\", comment = c(\"R port, R code, new C code and modifications to bibutils' C code, conversion to Bibentry (R and C code)\", comment = c(ORCID = \"0000-0003-2839-346X\")) ), person(given = \"Chris\", family = \"Putman\", role = \"aut\", comment = \"src/*, author of the bibutils libraries, https://sourceforge.net/projects/bibutils/\"), person(given = \"Richard\", family = \"Mathar\", role = \"ctb\", comment = \"src/addsout.c\"), person(given = \"Johannes\", family = \"Wilm\", role = \"ctb\", comment = \"src/biblatexin.c, src/bltypes.c\"), person(\"R Core Team\", role = \"ctb\", comment = \"base R's bibentry and bibstyle implementation\") )", + "Description": "Read and write 'Bibtex' files. Convert between bibliography formats, including 'Bibtex', 'Biblatex', 'PubMed', 'Endnote', and 'Bibentry'. Includes a port of the 'bibutils' utilities by Chris Putnam . Supports all bibliography formats and character encodings implemented in 'bibutils'.", + "License": "GPL-2", + "URL": "https://geobosh.github.io/rbibutils/ (doc), https://github.com/GeoBosh/rbibutils (devel)", + "BugReports": "https://github.com/GeoBosh/rbibutils/issues", + "Depends": [ + "R (>= 2.10)" + ], + "Imports": [ + "utils", + "tools" + ], + "Suggests": [ + "testthat" + ], + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Config/Needs/memcheck": "devtools, rcmdcheck", + "Author": "Georgi N. Boshnakov [aut, cre] (R port, R code, new C code and modifications to bibutils' C code, conversion to Bibentry (R and C code), comment.ORCID: 0000-0003-2839-346X), Chris Putman [aut] (src/*, author of the bibutils libraries, https://sourceforge.net/projects/bibutils/), Richard Mathar [ctb] (src/addsout.c), Johannes Wilm [ctb] (src/biblatexin.c, src/bltypes.c), R Core Team [ctb] (base R's bibentry and bibstyle implementation)", + "Maintainer": "Georgi N. Boshnakov ", + "Repository": "CRAN" + }, + "reformulas": { + "Package": "reformulas", + "Version": "0.4.3.1", + "Source": "Repository", + "Title": "Machinery for Processing Random Effect Formulas", + "Authors@R": "c( person(given = \"Ben\", family = \"Bolker\", role = c(\"aut\", \"cre\"), email = \"bolker@mcmaster.ca\", comment=c(ORCID=\"0000-0002-2127-0443\")), person(\"Anna\", \"Ly\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0210-0342\")) )", + "Description": "Takes formulas including random-effects components (formatted as in 'lme4', 'glmmTMB', etc.) and processes them. Includes various helper functions.", + "URL": "https://github.com/bbolker/reformulas", + "License": "GPL-3", + "Encoding": "UTF-8", + "Imports": [ + "stats", + "methods", + "Matrix", + "Rdpack" + ], + "RdMacros": "Rdpack", + "Suggests": [ + "lme4", + "tinytest", + "glmmTMB", + "testthat (>= 3.0.0)" + ], + "RoxygenNote": "7.3.3", + "Config/testthat/edition": "3", + "NeedsCompilation": "no", + "Author": "Ben Bolker [aut, cre] (ORCID: ), Anna Ly [ctb] (ORCID: )", + "Maintainer": "Ben Bolker ", + "Repository": "CRAN" }, - "rbibutils": { - "Package": "rbibutils", - "Version": "2.4", + "remotes": { + "Package": "remotes", + "Version": "2.5.0", "Source": "Repository", - "Requirements": [ - "R", + "Title": "R Package Installation from Remote Repositories, Including 'GitHub'", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Martin\", \"Morgan\", role = \"aut\"), person(\"Dan\", \"Tenenbaum\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Ascent Digital Services\", role = \"cph\") )", + "Description": "Download and install R packages stored in 'GitHub', 'GitLab', 'Bitbucket', 'Bioconductor', or plain 'subversion' or 'git' repositories. This package provides the 'install_*' functions in 'devtools'. Indeed most of the code was copied over from 'devtools'.", + "License": "MIT + file LICENSE", + "URL": "https://remotes.r-lib.org, https://github.com/r-lib/remotes#readme", + "BugReports": "https://github.com/r-lib/remotes/issues", + "Depends": [ + "R (>= 3.0.0)" + ], + "Imports": [ + "methods", + "stats", "tools", "utils" - ] + ], + "Suggests": [ + "brew", + "callr", + "codetools", + "covr", + "curl", + "git2r (>= 0.23.0)", + "knitr", + "mockery", + "pingr", + "pkgbuild (>= 1.0.1)", + "rmarkdown", + "rprojroot", + "testthat (>= 3.0.0)", + "webfakes", + "withr" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.3", + "SystemRequirements": "Subversion for install_svn, git for install_git", + "NeedsCompilation": "no", + "Author": "Gábor Csárdi [aut, cre], Jim Hester [aut], Hadley Wickham [aut], Winston Chang [aut], Martin Morgan [aut], Dan Tenenbaum [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" }, - "reformulas": { - "Package": "reformulas", - "Version": "0.4.3.1", + "renv": { + "Package": "renv", + "Version": "1.1.7", "Source": "Repository", - "Requirements": [ - "Matrix", - "methods", - "Rdpack", - "stats" - ] + "Type": "Package", + "Title": "Project Environments", + "Authors@R": "c( person(\"Kevin\", \"Ushey\", role = c(\"aut\", \"cre\"), email = \"kevin@rstudio.com\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Hadley\", \"Wickham\", role = c(\"aut\"), email = \"hadley@rstudio.com\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "A dependency management toolkit for R. Using 'renv', you can create and manage project-local R libraries, save the state of these libraries to a 'lockfile', and later restore your library as required. Together, these tools can help make your projects more isolated, portable, and reproducible.", + "License": "MIT + file LICENSE", + "URL": "https://rstudio.github.io/renv/, https://github.com/rstudio/renv", + "BugReports": "https://github.com/rstudio/renv/issues", + "Imports": [ + "utils" + ], + "Suggests": [ + "BiocManager", + "cli", + "compiler", + "covr", + "cpp11", + "curl", + "devtools", + "generics", + "gitcreds", + "jsonlite", + "jsonvalidate", + "knitr", + "miniUI", + "modules", + "packrat", + "pak", + "R6", + "remotes", + "reticulate", + "rmarkdown", + "rstudioapi", + "shiny", + "testthat", + "uuid", + "waldo", + "yaml", + "webfakes" + ], + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", + "Config/testthat/start-first": "bioconductor,python,install,restore,snapshot,retrieve,remotes", + "NeedsCompilation": "no", + "Author": "Kevin Ushey [aut, cre] (ORCID: ), Hadley Wickham [aut] (ORCID: ), Posit Software, PBC [cph, fnd]", + "Maintainer": "Kevin Ushey ", + "Repository": "CRAN" + }, + "rjson": { + "Package": "rjson", + "Version": "0.2.23", + "Source": "Repository", + "Title": "JSON for R", + "Author": "Alex Couture-Beil [aut, cre]", + "Authors@R": "person(given = \"Alex\", family = \"Couture-Beil\", role = c(\"aut\", \"cre\"), email = \"rjson_pkg@mofo.ca\")", + "Maintainer": "Alex Couture-Beil ", + "Depends": [ + "R (>= 4.0.0)" + ], + "Description": "Converts R object into JSON objects and vice-versa.", + "URL": "https://github.com/alexcb/rjson", + "License": "GPL-2", + "Repository": "CRAN", + "NeedsCompilation": "yes" }, "rlang": { "Package": "rlang", @@ -3179,62 +6923,200 @@ "Package": "rmarkdown", "Version": "2.30", "Source": "Repository", - "Requirements": [ - "bslib", - "evaluate", - "fontawesome", - "htmltools", + "Type": "Package", + "Title": "Dynamic Documents for R", + "Authors@R": "c( person(\"JJ\", \"Allaire\", , \"jj@posit.co\", role = \"aut\"), person(\"Yihui\", \"Xie\", , \"xie@yihui.name\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Christophe\", \"Dervieux\", , \"cderv@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Jonathan\", \"McPherson\", , \"jonathan@posit.co\", role = \"aut\"), person(\"Javier\", \"Luraschi\", role = \"aut\"), person(\"Kevin\", \"Ushey\", , \"kevin@posit.co\", role = \"aut\"), person(\"Aron\", \"Atkins\", , \"aron@posit.co\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\"), person(\"Richard\", \"Iannone\", , \"rich@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Andrew\", \"Dunning\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0464-5036\")), person(\"Atsushi\", \"Yasumoto\", role = c(\"ctb\", \"cph\"), comment = c(ORCID = \"0000-0002-8335-495X\", cph = \"Number sections Lua filter\")), person(\"Barret\", \"Schloerke\", role = \"ctb\"), person(\"Carson\", \"Sievert\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Devon\", \"Ryan\", , \"dpryan79@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8549-0971\")), person(\"Frederik\", \"Aust\", , \"frederik.aust@uni-koeln.de\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4900-788X\")), person(\"Jeff\", \"Allen\", , \"jeff@posit.co\", role = \"ctb\"), person(\"JooYoung\", \"Seo\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4064-6012\")), person(\"Malcolm\", \"Barrett\", role = \"ctb\"), person(\"Rob\", \"Hyndman\", , \"Rob.Hyndman@monash.edu\", role = \"ctb\"), person(\"Romain\", \"Lesur\", role = \"ctb\"), person(\"Roy\", \"Storey\", role = \"ctb\"), person(\"Ruben\", \"Arslan\", , \"ruben.arslan@uni-goettingen.de\", role = \"ctb\"), person(\"Sergio\", \"Oller\", role = \"ctb\"), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(, \"jQuery UI contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery UI library; 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authors listed in inst/rmd/h/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs), Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter), Albert Krewinkel [ctb, cph] (pagebreak Lua filter)", + "Maintainer": "Yihui Xie ", + "Repository": "CRAN" }, "rpart": { "Package": "rpart", "Version": "4.1.24", "Source": "Repository", - "Requirements": [ - "R", + "Priority": "recommended", + "Date": "2025-01-06", + "Authors@R": "c(person(\"Terry\", \"Therneau\", role = \"aut\", email = \"therneau@mayo.edu\"), person(\"Beth\", \"Atkinson\", role = c(\"aut\", \"cre\"), email = \"atkinson@mayo.edu\"), person(\"Brian\", \"Ripley\", role = \"trl\", email = \"ripley@stats.ox.ac.uk\", comment = \"producer of the initial R port, maintainer 1999-2017\"))", + "Description": "Recursive partitioning for classification, regression and survival trees. An implementation of most of the functionality of the 1984 book by Breiman, Friedman, Olshen and Stone.", + "Title": "Recursive Partitioning and Regression Trees", + "Depends": [ + "R (>= 2.15.0)", "graphics", "stats", "grDevices" - ] + ], + "Suggests": [ + "survival" + ], + "License": "GPL-2 | GPL-3", + "LazyData": "yes", + "ByteCompile": "yes", + "NeedsCompilation": "yes", + "Author": "Terry Therneau [aut], Beth Atkinson [aut, cre], Brian Ripley [trl] (producer of the initial R port, maintainer 1999-2017)", + "Maintainer": "Beth Atkinson ", + "Repository": "CRAN", + "URL": "https://github.com/bethatkinson/rpart, https://cran.r-project.org/package=rpart", + "BugReports": "https://github.com/bethatkinson/rpart/issues" + }, + "rprojroot": { + "Package": "rprojroot", + "Version": "2.1.1", + "Source": "Repository", + "Title": "Finding Files in Project Subdirectories", + "Authors@R": "person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\"))", + "Description": "Robust, reliable and flexible paths to files below a project root. The 'root' of a project is defined as a directory that matches a certain criterion, e.g., it contains a certain regular file.", + "License": "MIT + file LICENSE", + "URL": "https://rprojroot.r-lib.org/, https://github.com/r-lib/rprojroot", + "BugReports": "https://github.com/r-lib/rprojroot/issues", + "Depends": [ + "R (>= 3.0.0)" + ], + "Suggests": [ + "covr", + "knitr", + "lifecycle", + "rlang", + "rmarkdown", + "testthat (>= 3.2.0)", + "withr" + ], + "VignetteBuilder": "knitr", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2.9000", + "Config/autostyle/scope": "line_breaks", + "Config/autostyle/strict": "true", + "Config/Needs/website": "tidyverse/tidytemplate", + "NeedsCompilation": "no", + "Author": "Kirill Müller [aut, cre] (ORCID: )", + "Maintainer": "Kirill Müller ", + "Repository": "CRAN" }, "rsm": { "Package": "rsm", "Version": "2.10.6", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Date": "2025-03-24", + "Title": "Response-Surface Analysis", + "Authors@R": "c(person(\"Russell\", \"Lenth\", role = c(\"aut\", \"cre\"), email = \"russell-lenth@uiowa.edu\"))", + "Description": "Provides functions to generate response-surface designs, fit first- and second-order response-surface models, make surface plots, obtain the path of steepest ascent, and do canonical analysis. A good reference on these methods is Chapter 10 of Wu, C-F J and Hamada, M (2009) \"Experiments: Planning, Analysis, and Parameter Design Optimization\" ISBN 978-0-471-69946-0. An early version of the package is documented in Journal of Statistical Software .", + "URL": "https://github.com/rvlenth/rsm,https://rvlenth.github.io/rsm/", + "BugReports": "https://github.com/rvlenth/rsm/issues", + "Suggests": [ + "emmeans (> 1.3.5.1)", + "vdg", + "conf.design", + "DoE.base", + "FrF2", + "knitr", + "rmarkdown" + ], + "Imports": [ "estimability" - ] + ], + "License": "GPL (>= 2)", + "LazyLoad": "yes", + "ByteCompile": "yes", + "VignetteBuilder": "knitr", + "NeedsCompilation": "no", + "Author": "Russell Lenth [aut, cre]", + "Maintainer": "Russell Lenth ", + "Repository": "CRAN" }, "rstatix": { "Package": "rstatix", "Version": "0.7.3", "Source": "Repository", - "Requirements": [ - "broom", - "car", - "corrplot", - "dplyr", - "generics", - "magrittr", - "purrr", - "R", - "rlang", + "Type": "Package", + "Title": "Pipe-Friendly Framework for Basic Statistical Tests", + "Authors@R": "c( person(\"Alboukadel\", \"Kassambara\", role = c(\"aut\", \"cre\"), email = \"alboukadel.kassambara@gmail.com\"))", + "Description": "Provides a simple and intuitive pipe-friendly framework, coherent with the 'tidyverse' design philosophy, for performing basic statistical tests, including t-test, Wilcoxon test, ANOVA, Kruskal-Wallis and correlation analyses. 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The package contains helper functions for identifying univariate and multivariate outliers, assessing normality and homogeneity of variances.", + "License": "GPL-2", + "Encoding": "UTF-8", + "Depends": [ + "R (>= 3.3.0)" + ], + "Imports": [ "stats", - "tibble", - "tidyr", - "tidyselect", - "utils" - ] + "utils", + "tidyr (>= 1.0.0)", + "purrr", + "broom (>= 0.7.4)", + "rlang (>= 0.3.1)", + "tibble (>= 2.1.3)", + "dplyr (>= 0.7.1)", + "magrittr", + "corrplot", + "tidyselect (>= 1.2.0)", + "car", + "generics (>= 0.0.2)" + ], + "Suggests": [ + "knitr", + "rmarkdown", + "ggpubr", + "graphics", + "emmeans", + "coin", + "boot", + "testthat", + "spelling" + ], + "URL": "https://rpkgs.datanovia.com/rstatix/", + "BugReports": "https://github.com/kassambara/rstatix/issues", + "RoxygenNote": "7.3.3", + "Collate": "'utilities.R' 'add_significance.R' 'adjust_pvalue.R' 'factorial_design.R' 'utilities_two_sample_test.R' 'anova_summary.R' 'anova_test.R' 'as_cor_mat.R' 'binom_test.R' 'box_m.R' 'chisq_test.R' 'cochran_qtest.R' 'cohens_d.R' 'cor_as_symbols.R' 'replace_triangle.R' 'pull_triangle.R' 'cor_mark_significant.R' 'cor_mat.R' 'cor_plot.R' 'cor_reorder.R' 'cor_reshape.R' 'cor_select.R' 'cor_test.R' 'counts_to_cases.R' 'cramer_v.R' 'df.R' 'doo.R' 't_test.R' 'dunn_test.R' 'emmeans_test.R' 'eta_squared.R' 'factors.R' 'fisher_test.R' 'freq_table.R' 'friedman_test.R' 'friedman_effsize.R' 'games_howell_test.R' 'get_comparisons.R' 'get_manova_table.R' 'get_mode.R' 'get_pvalue_position.R' 'get_summary_stats.R' 'get_test_label.R' 'kruskal_effesize.R' 'kruskal_test.R' 'levene_test.R' 'mahalanobis_distance.R' 'make_clean_names.R' 'mcnemar_test.R' 'multinom_test.R' 'outliers.R' 'p_value.R' 'prop_test.R' 'prop_trend_test.R' 'reexports.R' 'remove_ns.R' 'sample_n_by.R' 'shapiro_test.R' 'sign_test.R' 'tukey_hsd.R' 'utils-manova.R' 'utils-pipe.R' 'welch_anova_test.R' 'wilcox_effsize.R' 'wilcox_test.R'", + "Language": "en-US", + "NeedsCompilation": "no", + "Author": "Alboukadel Kassambara [aut, cre]", + "Maintainer": "Alboukadel Kassambara ", + "Repository": "RSPM" }, "rstpm2": { "Package": "rstpm2", @@ -3293,45 +7175,146 @@ "Package": "rstudioapi", "Version": "0.18.0", "Source": "Repository", - "Requirements": [] + "Title": "Safely Access the RStudio API", + "Description": "Access the RStudio API (if available) and provide informative error messages when it's not.", + "Authors@R": "c( person(\"Kevin\", \"Ushey\", role = c(\"aut\", \"cre\"), email = \"kevin@rstudio.com\"), person(\"JJ\", \"Allaire\", role = c(\"aut\"), email = \"jj@posit.co\"), person(\"Hadley\", \"Wickham\", role = c(\"aut\"), email = \"hadley@posit.co\"), person(\"Gary\", \"Ritchie\", role = c(\"aut\"), email = \"gary@posit.co\"), person(family = \"RStudio\", role = \"cph\") )", + "Maintainer": "Kevin Ushey ", + "License": "MIT + file LICENSE", + "URL": "https://rstudio.github.io/rstudioapi/, https://github.com/rstudio/rstudioapi", + "BugReports": "https://github.com/rstudio/rstudioapi/issues", + "RoxygenNote": "7.3.3", + "Suggests": [ + "testthat", + "knitr", + "rmarkdown", + "clipr", + "covr", + "curl", + "jsonlite", + "withr" + ], + "VignetteBuilder": "knitr", + "Encoding": "UTF-8", + "NeedsCompilation": "no", + "Author": "Kevin Ushey [aut, cre], JJ Allaire [aut], Hadley Wickham [aut], Gary Ritchie [aut], RStudio [cph]", + "Repository": "CRAN" }, "rvg": { "Package": "rvg", "Version": "0.4.0", "Source": "Repository", - "Requirements": [ - "gdtools", + "Type": "Package", + "Title": "R Graphics Devices for 'Office' Vector Graphics Output", + "Authors@R": "c( person(\"David\", \"Gohel\", , \"david.gohel@ardata.fr\", role = c(\"aut\", \"cre\")), person(\"ArData\", role = \"cph\"), person(\"Bob\", \"Rudis\", role = \"ctb\", comment = \"the javascript code used by function set_attr\"), person(\"Francois\", \"Brunetti\", , \"francois.brunetti@lysis-consultants.fr\", role = \"ctb\", comment = \"clipping algorithms\") )", + "Description": "Vector Graphics devices for 'Microsoft PowerPoint' and 'Microsoft Excel'. Functions extending package 'officer' are provided to embed 'DrawingML' graphics into 'Microsoft PowerPoint' presentations and 'Microsoft Excel' workbooks.", + "License": "GPL-3", + "URL": "https://ardata-fr.github.io/officeverse/, https://davidgohel.github.io/rvg/", + "BugReports": "https://github.com/davidgohel/rvg/issues", + "Depends": [ + "R (>= 3.0)" + ], + "Imports": [ + "gdtools (>= 0.3.3)", "grDevices", - "officer", - "R", - "Rcpp", + "officer (>= 0.6.2)", + "Rcpp (>= 0.12.12)", "rlang", "systemfonts", - "xml2" - ] + "xml2 (>= 1.0.0)" + ], + "Suggests": [ + "grid", + "testthat" + ], + "LinkingTo": [ + "Rcpp", + "systemfonts" + ], + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "SystemRequirements": "libpng", + "NeedsCompilation": "yes", + "Author": "David Gohel [aut, cre], ArData [cph], Bob Rudis [ctb] (the javascript code used by function set_attr), Francois Brunetti [ctb] (clipping algorithms)", + "Maintainer": "David Gohel ", + "Repository": "CRAN" }, "sandwich": { "Package": "sandwich", "Version": "3.1-1", "Source": "Repository", - "Requirements": [ - "R", + "Date": "2024-09-16", + "Title": "Robust Covariance Matrix Estimators", + "Authors@R": "c(person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")), person(given = \"Thomas\", family = \"Lumley\", role = \"aut\", email = \"t.lumley@auckland.ac.nz\", comment = c(ORCID = \"0000-0003-4255-5437\")), person(given = \"Nathaniel\", family = \"Graham\", role = \"ctb\", email = \"npgraham1@gmail.com\", comment = c(ORCID = \"0009-0002-1215-5256\")), person(given = \"Susanne\", family = \"Koell\", role = \"ctb\"))", + "Description": "Object-oriented software for model-robust covariance matrix estimators. Starting out from the basic robust Eicker-Huber-White sandwich covariance methods include: heteroscedasticity-consistent (HC) covariances for cross-section data; heteroscedasticity- and autocorrelation-consistent (HAC) covariances for time series data (such as Andrews' kernel HAC, Newey-West, and WEAVE estimators); clustered covariances (one-way and multi-way); panel and panel-corrected covariances; outer-product-of-gradients covariances; and (clustered) bootstrap covariances. All methods are applicable to (generalized) linear model objects fitted by lm() and glm() but can also be adapted to other classes through S3 methods. Details can be found in Zeileis et al. (2020) , Zeileis (2004) and Zeileis (2006) .", + "Depends": [ + "R (>= 3.0.0)" + ], + "Imports": [ "stats", "utils", "zoo" - ] + ], + "Suggests": [ + "AER", + "car", + "geepack", + "lattice", + "lme4", + "lmtest", + "MASS", + "multiwayvcov", + "parallel", + "pcse", + "plm", + "pscl", + "scatterplot3d", + "stats4", + "strucchange", + "survival" + ], + "License": "GPL-2 | GPL-3", + "URL": "https://sandwich.R-Forge.R-project.org/", + "BugReports": "https://sandwich.R-Forge.R-project.org/contact.html", + "NeedsCompilation": "no", + "Author": "Achim Zeileis [aut, cre] (), Thomas Lumley [aut] (), Nathaniel Graham [ctb] (), Susanne Koell [ctb]", + "Maintainer": "Achim Zeileis ", + "Repository": "CRAN" }, "sass": { "Package": "sass", "Version": "0.4.10", "Source": "Repository", - "Requirements": [ - "fs", - "htmltools", + "Type": "Package", + "Title": "Syntactically Awesome Style Sheets ('Sass')", + "Description": "An 'SCSS' compiler, powered by the 'LibSass' library. With this, R developers can use variables, inheritance, and functions to generate dynamic style sheets. The package uses the 'Sass CSS' extension language, which is stable, powerful, and CSS compatible.", + "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@rstudio.com\", \"aut\"), person(\"Timothy\", \"Mastny\", , \"tim.mastny@gmail.com\", \"aut\"), person(\"Richard\", \"Iannone\", , \"rich@rstudio.com\", \"aut\", comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Barret\", \"Schloerke\", , \"barret@rstudio.com\", \"aut\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Carson\", \"Sievert\", , \"carson@rstudio.com\", c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Christophe\", \"Dervieux\", , \"cderv@rstudio.com\", c(\"ctb\"), comment = c(ORCID = \"0000-0003-4474-2498\")), person(family = \"RStudio\", role = c(\"cph\", \"fnd\")), person(family = \"Sass Open Source Foundation\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Greter\", \"Marcel\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Mifsud\", \"Michael\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Hampton\", \"Catlin\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Natalie\", \"Weizenbaum\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Chris\", \"Eppstein\", role = c(\"ctb\", \"cph\"), comment = \"LibSass library\"), person(\"Adams\", \"Joseph\", role = c(\"ctb\", \"cph\"), comment = \"json.cpp\"), person(\"Trifunovic\", \"Nemanja\", role = c(\"ctb\", \"cph\"), comment = \"utf8.h\") )", + "License": "MIT + file LICENSE", + "URL": "https://rstudio.github.io/sass/, https://github.com/rstudio/sass", + "BugReports": "https://github.com/rstudio/sass/issues", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "SystemRequirements": "GNU make", + "Imports": [ + "fs (>= 1.2.4)", + "rlang (>= 0.4.10)", + "htmltools (>= 0.5.1)", "R6", - "rappdirs", - "rlang" - ] + "rappdirs" + ], + "Suggests": [ + "testthat", + "knitr", + "rmarkdown", + "withr", + "shiny", + "curl" + ], + "VignetteBuilder": "knitr", + "Config/testthat/edition": "3", + "NeedsCompilation": "yes", + "Author": "Joe Cheng [aut], Timothy Mastny [aut], Richard Iannone [aut] (), Barret Schloerke [aut] (), Carson Sievert [aut, cre] (), Christophe Dervieux [ctb] (), RStudio [cph, fnd], Sass Open Source Foundation [ctb, cph] (LibSass library), Greter Marcel [ctb, cph] (LibSass library), Mifsud Michael [ctb, cph] (LibSass library), Hampton Catlin [ctb, cph] (LibSass library), Natalie Weizenbaum [ctb, cph] (LibSass library), Chris Eppstein [ctb, cph] (LibSass library), Adams Joseph [ctb, cph] (json.cpp), Trifunovic Nemanja [ctb, cph] (utf8.h)", + "Maintainer": "Carson Sievert ", + "Repository": "CRAN" }, "scales": { "Package": "scales", @@ -3381,36 +7364,104 @@ "Package": "scatterplot3d", "Version": "0.3-44", "Source": "Repository", - "Requirements": [ - "graphics", + "Date": "2023-05-05", + "Title": "3D Scatter Plot", + "Author": "Uwe Ligges , Martin Maechler, Sarah Schnackenberg", + "Maintainer": "Uwe Ligges ", + "Description": "Plots a three dimensional (3D) point cloud.", + "Depends": [ + "R (>= 2.7.0)" + ], + "License": "GPL-2", + "Encoding": "UTF-8", + "Imports": [ "grDevices", - "R", + "graphics", "stats" - ] + ], + "NeedsCompilation": "no", + "Repository": "CRAN" }, "sets": { "Package": "sets", "Version": "1.0-25", "Source": "Repository", - "Requirements": [ + "Title": "Sets, Generalized Sets, Customizable Sets and Intervals", + "Description": "Data structures and basic operations for ordinary sets, generalizations such as fuzzy sets, multisets, and fuzzy multisets, customizable sets, and intervals.", + "Authors@R": "c(person(given = \"David\", family = \"Meyer\", role = c(\"aut\", \"cre\"), email = \"David.Meyer@R-project.org\", comment = c(ORCID = \"0000-0002-5196-3048\")),\t person(given = \"Kurt\", family = \"Hornik\", role = \"aut\", email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(given = \"Christian\", family = \"Buchta\", role = \"ctb\"))", + "Depends": [ + "R (>= 2.7.0)" + ], + "Suggests": [ + "proxy" + ], + "Imports": [ "graphics", "grDevices", - "R", "stats", "utils" - ] + ], + "License": "GPL-2", + "NeedsCompilation": "yes", + "Author": "David Meyer [aut, cre] (), Kurt Hornik [aut] (), Christian Buchta [ctb]", + "Maintainer": "David Meyer ", + "Repository": "CRAN" }, "sfsmisc": { "Package": "sfsmisc", "Version": "1.1-23", "Source": "Repository", - "Requirements": [ + "Title": "Utilities from 'Seminar fuer Statistik' ETH Zurich", + "VersionNote": "Last CRAN: 1.1-22 on 2025-08-30; 1.1-21 on 2025-07-25; 1.1-20 on 2024-10-23; 1.1-19 on 2024-08-16", + "Date": "2025-11-20", + "Authors@R": "c(person(\"Martin\",\"Maechler\", role=c(\"aut\",\"cre\"), email=\"maechler@stat.math.ethz.ch\", comment = c(ORCID = \"0000-0002-8685-9910\")) , person(\"Werner\", \"Stahel\", role = \"ctb\", comment = \"Functions: compresid2way(), f.robftest(), last(), p.scales(), p.dnorm()\") , person(\"Andreas\", \"Ruckstuhl\", role = \"ctb\", comment = \"Functions: p.arrows(), p.profileTraces(), p.res.2x()\") , person(\"Christian\", \"Keller\", role = \"ctb\", comment = \"Functions: histBxp(), p.tachoPlot()\") , person(\"Kjetil\", \"Halvorsen\", role = \"ctb\", comment = \"Functions: KSd(), ecdf.ksCI()\") , person(\"Alain\", \"Hauser\", role = \"ctb\", comment = \"Functions: cairoSwd(), is.whole(), toLatex.numeric()*\") , person(\"Christoph\", \"Buser\", role = \"ctb\", comment = \"to function Duplicated()\") , person(\"Lorenz\", \"Gygax\", role = \"ctb\", comment = \"to function p.res.2fact()\") , person(\"Bill\", \"Venables\", role = \"ctb\", comment = \"Functions: empty.dimnames(), primes()\") , person(\"Tony\", \"Plate\", role = \"ctb\", comment = \"to inv.seq()\") # minor contributors: , person(\"Isabelle\", \"Flückiger\", role = \"ctb\") , person(\"Marcel\", \"Wolbers\", role = \"ctb\") , person(\"Markus\", \"Keller\", role = \"ctb\") , person(\"Sandrine\", \"Dudoit\", role = \"ctb\") , person(\"Jane\", \"Fridlyand\", role = \"ctb\") , person(\"Greg\", \"Snow\", role = \"ctb\", comment = \"to loessDemo()\") , person(\"Henrik Aa.\", \"Nielsen\", role = \"ctb\", comment = \"to loessDemo()\") , person(\"Vincent\", \"Carey\", role = \"ctb\") , person(\"Ben\", \"Bolker\", role = \"ctb\") , person(\"Philippe\", \"Grosjean\", role = \"ctb\") , person(\"Frédéric\", \"Ibanez\", role = \"ctb\") , person(\"Caterina\", \"Savi\", role = \"ctb\") , person(\"Charles\", \"Geyer\", role = \"ctb\") , person(\"Jens\", \"Oehlschlägel\", role = \"ctb\") )", + "Maintainer": "Martin Maechler ", + "Description": "Useful utilities ['goodies'] from Seminar fuer Statistik ETH Zurich, some of which were ported from S-plus in the 1990s. For graphics, have pretty (Log-scale) axes eaxis(), an enhanced Tukey-Anscombe plot, combining histogram and boxplot, 2d-residual plots, a 'tachoPlot()', pretty arrows, etc. For robustness, have a robust F test and robust range(). For system support, notably on Linux, provides 'Sys.*()' functions with more access to system and CPU information. Finally, miscellaneous utilities such as simple efficient prime numbers, integer codes, Duplicated(), toLatex.numeric() and is.whole().", + "Depends": [ + "R (>= 3.3.0)" + ], + "Imports": [ "grDevices", - "R", + "utils", "stats", - "tools", - "utils" - ] + "tools" + ], + "Suggests": [ + "datasets", + "tcltk", + "cluster", + "lattice", + "MASS", + "Matrix", + "nlme", + "lokern", + "Rmpfr", + "gmp" + ], + "Enhances": [ + "mgcv", + "rpart", + "nor1mix", + "polycor", + "sm", + "tikzDevice", + "DescTools", + "e1071", + "Hmisc", + "pastecs", + "polynom", + "relevance", + "robustbase" + ], + "EnhancesNote": "2nd line: packages mentioned in Rd xrefs", + "Encoding": "UTF-8", + "ByteCompile": "yes", + "License": "GPL (>= 2)", + "URL": "https://github.com/mmaechler/sfsmisc", + "BugReports": "https://github.com/mmaechler/sfsmisc/issues", + "NeedsCompilation": "no", + "Author": "Martin Maechler [aut, cre] (ORCID: ), Werner Stahel [ctb] (Functions: compresid2way(), f.robftest(), last(), p.scales(), p.dnorm()), Andreas Ruckstuhl [ctb] (Functions: p.arrows(), p.profileTraces(), p.res.2x()), Christian Keller [ctb] (Functions: histBxp(), p.tachoPlot()), Kjetil Halvorsen [ctb] (Functions: KSd(), ecdf.ksCI()), Alain Hauser [ctb] (Functions: cairoSwd(), is.whole(), toLatex.numeric()*), Christoph Buser [ctb] (to function Duplicated()), Lorenz Gygax [ctb] (to function p.res.2fact()), Bill Venables [ctb] (Functions: empty.dimnames(), primes()), Tony Plate [ctb] (to inv.seq()), Isabelle Flückiger [ctb], Marcel Wolbers [ctb], Markus Keller [ctb], Sandrine Dudoit [ctb], Jane Fridlyand [ctb], Greg Snow [ctb] (to loessDemo()), Henrik Aa. Nielsen [ctb] (to loessDemo()), Vincent Carey [ctb], Ben Bolker [ctb], Philippe Grosjean [ctb], Frédéric Ibanez [ctb], Caterina Savi [ctb], Charles Geyer [ctb], Jens Oehlschlägel [ctb]", + "Repository": "CRAN" }, "statmod": { "Package": "statmod", @@ -3516,14 +7567,36 @@ "Package": "strucchange", "Version": "1.5-4", "Source": "Repository", - "Requirements": [ + "Date": "2024-09-02", + "Title": "Testing, Monitoring, and Dating Structural Changes", + "Authors@R": "c(person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")), person(given = \"Friedrich\", family = \"Leisch\", role = \"aut\", email = \"Friedrich.Leisch@R-project.org\"), person(given = \"Kurt\", family = \"Hornik\", role = \"aut\", email = \"Kurt.Hornik@R-project.org\"), person(given = \"Christian\", family = \"Kleiber\", role = \"aut\", email = \"Christian.Kleiber@unibas.ch\"), person(given = \"Bruce\", family = \"Hansen\", role = \"ctb\"), person(given = c(\"Edgar\", \"C.\"), family = \"Merkle\", role = \"ctb\"), person(given = \"Nikolaus\", family = \"Umlauf\", role = \"ctb\"))", + "Description": "Testing, monitoring and dating structural changes in (linear) regression models. strucchange features tests/methods from the generalized fluctuation test framework as well as from the F test (Chow test) framework. This includes methods to fit, plot and test fluctuation processes (e.g., CUSUM, MOSUM, recursive/moving estimates) and F statistics, respectively. It is possible to monitor incoming data online using fluctuation processes. Finally, the breakpoints in regression models with structural changes can be estimated together with confidence intervals. Emphasis is always given to methods for visualizing the data.", + "LazyData": "yes", + "Depends": [ + "R (>= 2.10.0)", + "zoo", + "sandwich" + ], + "Suggests": [ + "stats4", + "car", + "dynlm", + "e1071", + "foreach", + "lmtest", + "mvtnorm", + "tseries" + ], + "Imports": [ "graphics", - "R", - "sandwich", "stats", - "utils", - "zoo" - ] + "utils" + ], + "License": "GPL-2 | GPL-3", + "NeedsCompilation": "yes", + "Author": "Achim Zeileis [aut, cre] (), Friedrich Leisch [aut], Kurt Hornik [aut], Christian Kleiber [aut], Bruce Hansen [ctb], Edgar C. Merkle [ctb], Nikolaus Umlauf [ctb]", + "Maintainer": "Achim Zeileis ", + "Repository": "CRAN" }, "survival": { "Package": "survival", @@ -3559,51 +7632,227 @@ "Package": "svglite", "Version": "2.2.2", "Source": "Repository", - "Requirements": [ + "Title": "An 'SVG' Graphics Device", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"T Jake\", \"Luciani\", , \"jake@apache.org\", role = \"aut\"), person(\"Matthieu\", \"Decorde\", , \"matthieu.decorde@ens-lyon.fr\", role = \"aut\"), person(\"Vaudor\", \"Lise\", , \"lise.vaudor@ens-lyon.fr\", role = \"aut\"), person(\"Tony\", \"Plate\", role = \"ctb\", comment = \"Early line dashing code\"), person(\"David\", \"Gohel\", role = \"ctb\", comment = \"Line dashing code and early raster code\"), person(\"Yixuan\", \"Qiu\", role = \"ctb\", comment = \"Improved styles; polypath implementation\"), person(\"Håkon\", \"Malmedal\", role = \"ctb\", comment = \"Opacity code\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Description": "A graphics device for R that produces 'Scalable Vector Graphics'. 'svglite' is a fork of the older 'RSvgDevice' package.", + "License": "GPL (>= 2)", + "URL": "https://svglite.r-lib.org, https://github.com/r-lib/svglite", + "BugReports": "https://github.com/r-lib/svglite/issues", + "Depends": [ + "R (>= 4.1)" + ], + "Imports": [ "base64enc", "cli", - "cpp11", "lifecycle", - "R", - "rlang", + "rlang (>= 1.1.0)", + "systemfonts (>= 1.3.0)", + "textshaping (>= 0.3.0)" + ], + "Suggests": [ + "covr", + "fontquiver (>= 0.2.0)", + "htmltools", + "knitr", + "rmarkdown", + "testthat (>= 3.0.0)", + "xml2 (>= 1.0.0)" + ], + "LinkingTo": [ + "cpp11", "systemfonts", "textshaping" - ] + ], + "VignetteBuilder": "knitr", + "Config/build/compilation-database": "true", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-25", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "SystemRequirements": "libpng", + "NeedsCompilation": "yes", + "Author": "Hadley Wickham [aut], Lionel Henry [aut], Thomas Lin Pedersen [cre, aut] (ORCID: ), T Jake Luciani [aut], Matthieu Decorde [aut], Vaudor Lise [aut], Tony Plate [ctb] (Early line dashing code), David Gohel [ctb] (Line dashing code and early raster code), Yixuan Qiu [ctb] (Improved styles; polypath implementation), Håkon Malmedal [ctb] (Opacity code), Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Thomas Lin Pedersen ", + "Repository": "CRAN" }, "sys": { "Package": "sys", "Version": "3.4.3", "Source": "Repository", - "Requirements": [] + "Type": "Package", + "Title": "Powerful and Reliable Tools for Running System Commands in R", + "Authors@R": "c(person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"ctb\"))", + "Description": "Drop-in replacements for the base system2() function with fine control and consistent behavior across platforms. Supports clean interruption, timeout, background tasks, and streaming STDIN / STDOUT / STDERR over binary or text connections. Arguments on Windows automatically get encoded and quoted to work on different locales.", + "License": "MIT + file LICENSE", + "URL": "https://jeroen.r-universe.dev/sys", + "BugReports": "https://github.com/jeroen/sys/issues", + "Encoding": "UTF-8", + "RoxygenNote": "7.1.1", + "Suggests": [ + "unix (>= 1.4)", + "spelling", + "testthat" + ], + "Language": "en-US", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] (), Gábor Csárdi [ctb]", + "Maintainer": "Jeroen Ooms ", + "Repository": "CRAN" }, "systemfonts": { "Package": "systemfonts", "Version": "1.3.1", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "System Native Font Finding", + "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Jeroen\", \"Ooms\", , \"jeroen@berkeley.edu\", role = \"aut\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Devon\", \"Govett\", role = \"aut\", comment = \"Author of font-manager\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Description": "Provides system native access to the font catalogue. As font handling varies between systems it is difficult to correctly locate installed fonts across different operating systems. The 'systemfonts' package provides bindings to the native libraries on Windows, macOS and Linux for finding font files that can then be used further by e.g. graphic devices. The main use is intended to be from compiled code but 'systemfonts' also provides access from R.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/r-lib/systemfonts, https://systemfonts.r-lib.org", + "BugReports": "https://github.com/r-lib/systemfonts/issues", + "Depends": [ + "R (>= 3.2.0)" + ], + "Imports": [ "base64enc", - "cpp11", "grid", "jsonlite", "lifecycle", - "R", "tools", "utils" - ] + ], + "Suggests": [ + "covr", + "farver", + "ggplot2", + "graphics", + "knitr", + "ragg", + "rmarkdown", + "svglite", + "testthat (>= 2.1.0)" + ], + "LinkingTo": [ + "cpp11 (>= 0.2.1)" + ], + "VignetteBuilder": "knitr", + "Config/build/compilation-database": "true", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/usethis/last-upkeep": "2025-04-23", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "SystemRequirements": "fontconfig, freetype2", + "NeedsCompilation": "yes", + "Author": "Thomas Lin Pedersen [aut, cre] (ORCID: ), Jeroen Ooms [aut] (ORCID: ), Devon Govett [aut] (Author of font-manager), Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Thomas Lin Pedersen ", + "Repository": "CRAN" + }, + "testthat": { + "Package": "testthat", + "Version": "3.3.2", + "Source": "Repository", + "Title": "Unit Testing for R", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Core team\", role = \"ctb\", comment = \"Implementation of utils::recover()\") )", + "Description": "Software testing is important, but, in part because it is frustrating and boring, many of us avoid it. 'testthat' is a testing framework for R that is easy to learn and use, and integrates with your existing 'workflow'.", + "License": "MIT + file LICENSE", + "URL": "https://testthat.r-lib.org, https://github.com/r-lib/testthat", + "BugReports": "https://github.com/r-lib/testthat/issues", + "Depends": [ + "R (>= 4.1.0)" + ], + "Imports": [ + "brio (>= 1.1.5)", + "callr (>= 3.7.6)", + "cli (>= 3.6.5)", + "desc (>= 1.4.3)", + "evaluate (>= 1.0.4)", + "jsonlite (>= 2.0.0)", + "lifecycle (>= 1.0.4)", + "magrittr (>= 2.0.3)", + "methods", + "pkgload (>= 1.4.0)", + "praise (>= 1.0.0)", + "processx (>= 3.8.6)", + "ps (>= 1.9.1)", + "R6 (>= 2.6.1)", + "rlang (>= 1.1.6)", + "utils", + "waldo (>= 0.6.2)", + "withr (>= 3.0.2)" + ], + "Suggests": [ + "covr", + "curl (>= 0.9.5)", + "diffviewer (>= 0.1.0)", + "digest (>= 0.6.33)", + "gh", + "knitr", + "otel", + "otelsdk", + "rmarkdown", + "rstudioapi", + "S7", + "shiny", + "usethis", + "vctrs (>= 0.1.0)", + "xml2" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", + "Config/testthat/start-first": "watcher, parallel*", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "NeedsCompilation": "yes", + "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd], R Core team [ctb] (Implementation of utils::recover())", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" }, "textshaping": { "Package": "textshaping", "Version": "1.0.4", "Source": "Repository", - "Requirements": [ - "cpp11", + "Title": "Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text Shaping", + "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Description": "Provides access to the text shaping functionality in the 'HarfBuzz' library and the bidirectional algorithm in the 'Fribidi' library. 'textshaping' is a low-level utility package mainly for graphic devices that expands upon the font tool-set provided by the 'systemfonts' package.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/r-lib/textshaping", + "BugReports": "https://github.com/r-lib/textshaping/issues", + "Depends": [ + "R (>= 3.2.0)" + ], + "Imports": [ "lifecycle", - "R", "stats", "stringi", - "systemfonts", + "systemfonts (>= 1.3.0)", "utils" - ] + ], + "Suggests": [ + "covr", + "grDevices", + "grid", + "knitr", + "rmarkdown", + "testthat (>= 3.0.0)" + ], + "LinkingTo": [ + "cpp11 (>= 0.2.1)", + "systemfonts (>= 1.0.0)" + ], + "VignetteBuilder": "knitr", + "Config/build/compilation-database": "true", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-23", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "SystemRequirements": "freetype2, harfbuzz, fribidi", + "NeedsCompilation": "yes", + "Author": "Thomas Lin Pedersen [cre, aut] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Thomas Lin Pedersen ", + "Repository": "CRAN" }, "tibble": { "Package": "tibble", @@ -3674,12 +7923,18 @@ "Package": "tidyplots", "Version": "0.4.0", "Source": "Repository", - "Requirements": [ + "Title": "Tidy Plots for Scientific Papers", + "Authors@R": "person(\"Jan Broder\", \"Engler\", , \"broder.engler@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0002-3169-2076\"))", + "Description": "The goal of 'tidyplots' is to streamline the creation of publication-ready plots for scientific papers. It allows to gradually add, remove and adjust plot components using a consistent and intuitive syntax.", + "License": "MIT + file LICENSE", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "Imports": [ "cli", "dplyr", "forcats", "ggbeeswarm", - "ggplot2", + "ggplot2 (>= 4.0.1)", "ggpubr", "ggrastr", "ggrepel", @@ -3689,13 +7944,30 @@ "htmltools", "lifecycle", "purrr", - "R", "rlang", "scales", "stringr", "tidyr", "tidyselect" - ] + ], + "Depends": [ + "R (>= 4.1.0)" + ], + "LazyData": "true", + "URL": "https://github.com/jbengler/tidyplots, https://jbengler.github.io/tidyplots/", + "BugReports": "https://github.com/jbengler/tidyplots/issues", + "Suggests": [ + "knitr", + "rmarkdown", + "testthat (>= 3.0.0)", + "vdiffr" + ], + "VignetteBuilder": "knitr", + "Config/testthat/edition": "3", + "NeedsCompilation": "no", + "Author": "Jan Broder Engler [aut, cre, cph] (ORCID: )", + "Maintainer": "Jan Broder Engler ", + "Repository": "CRAN" }, "tidyr": { "Package": "tidyr", @@ -3795,57 +8067,131 @@ "Package": "timeDate", "Version": "4051.111", "Source": "Repository", - "Requirements": [ + "Title": "Rmetrics - Chronological and Calendar Objects", + "Authors@R": "c(person(\"Diethelm\", \"Wuertz\", role=\"aut\", comment = \"original code\") , person(\"Tobias\", \"Setz\", role = c(\"aut\"), email = \"tobias.setz@live.com\") , person(\"Yohan\", \"Chalabi\", role = \"aut\") , person(\"Martin\",\"Maechler\", role = \"ctb\", email = \"maechler@stat.math.ethz.ch\", comment = c(ORCID = \"0000-0002-8685-9910\")) , person(given = c(\"Joe\", \"W.\"), family = \"Byers\", role = \"ctb\") , person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\", role = c(\"cre\", \"aut\"), email = \"georgi.boshnakov@manchester.ac.uk\", comment = c(ORCID = \"0000-0003-2839-346X\")) )", + "Description": "The 'timeDate' class fulfils the conventions of the ISO 8601 standard as well as of the ANSI C and POSIX standards. Beyond these standards it provides the \"Financial Center\" concept which allows to handle data records collected in different time zones and mix them up to have always the proper time stamps with respect to your personal financial center, or alternatively to the GMT reference time. It can thus also handle time stamps from historical data records from the same time zone, even if the financial centers changed day light saving times at different calendar dates.", + "Depends": [ + "R (>= 3.6.0)", + "methods" + ], + "Imports": [ "graphics", - "methods", - "R", - "stats", - "utils" - ] + "utils", + "stats" + ], + "Suggests": [ + "RUnit" + ], + "License": "GPL (>= 2)", + "Encoding": "UTF-8", + "URL": "https://geobosh.github.io/timeDateDoc/ (doc), https://r-forge.r-project.org/scm/viewvc.php/pkg/timeDate/?root=rmetrics (devel), https://www.rmetrics.org", + "BugReports": "https://r-forge.r-project.org/projects/rmetrics", + "NeedsCompilation": "no", + "Author": "Diethelm Wuertz [aut] (original code), Tobias Setz [aut], Yohan Chalabi [aut], Martin Maechler [ctb] (ORCID: ), Joe W. Byers [ctb], Georgi N. Boshnakov [cre, aut] (ORCID: )", + "Maintainer": "Georgi N. Boshnakov ", + "Repository": "CRAN" }, "timechange": { "Package": "timechange", "Version": "0.3.0", "Source": "Repository", - "Requirements": [ - "cpp11", - "R" - ] + "Title": "Efficient Manipulation of Date-Times", + "Authors@R": "c(person(\"Vitalie\", \"Spinu\", email = \"spinuvit@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Google Inc.\", role = c(\"ctb\", \"cph\")))", + "Description": "Efficient routines for manipulation of date-time objects while accounting for time-zones and daylight saving times. The package includes utilities for updating of date-time components (year, month, day etc.), modification of time-zones, rounding of date-times, period addition and subtraction etc. Parts of the 'CCTZ' source code, released under the Apache 2.0 License, are included in this package. See for more details.", + "Depends": [ + "R (>= 3.3)" + ], + "License": "GPL (>= 3)", + "Encoding": "UTF-8", + "LinkingTo": [ + "cpp11 (>= 0.2.7)" + ], + "Suggests": [ + "testthat (>= 0.7.1.99)", + "knitr" + ], + "SystemRequirements": "A system with zoneinfo data (e.g. /usr/share/zoneinfo) as well as a recent-enough C++11 compiler (such as g++-4.8 or later). On Windows the zoneinfo included with R is used.", + "BugReports": "https://github.com/vspinu/timechange/issues", + "URL": "https://github.com/vspinu/timechange/", + "RoxygenNote": "7.2.1", + "NeedsCompilation": "yes", + "Author": "Vitalie Spinu [aut, cre], Google Inc. [ctb, cph]", + "Maintainer": "Vitalie Spinu ", + "Repository": "CRAN" }, "tinytex": { "Package": "tinytex", "Version": "0.58", "Source": "Repository", - "Requirements": [ - "xfun" - ] + "Type": "Package", + "Title": "Helper Functions to Install and Maintain TeX Live, and Compile LaTeX Documents", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\", \"cph\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Christophe\", \"Dervieux\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Devon\", \"Ryan\", role = \"ctb\", email = \"dpryan79@gmail.com\", comment = c(ORCID = \"0000-0002-8549-0971\")), person(\"Ethan\", \"Heinzen\", role = \"ctb\"), person(\"Fernando\", \"Cagua\", role = \"ctb\"), person() )", + "Description": "Helper functions to install and maintain the 'LaTeX' distribution named 'TinyTeX' (), a lightweight, cross-platform, portable, and easy-to-maintain version of 'TeX Live'. This package also contains helper functions to compile 'LaTeX' documents, and install missing 'LaTeX' packages automatically.", + "Imports": [ + "xfun (>= 0.48)" + ], + "Suggests": [ + "testit", + "rstudioapi" + ], + "License": "MIT + file LICENSE", + "URL": "https://github.com/rstudio/tinytex", + "BugReports": "https://github.com/rstudio/tinytex/issues", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "NeedsCompilation": "no", + "Author": "Yihui Xie [aut, cre, cph] (ORCID: ), Posit Software, PBC [cph, fnd], Christophe Dervieux [ctb] (ORCID: ), Devon Ryan [ctb] (ORCID: ), Ethan Heinzen [ctb], Fernando Cagua [ctb]", + "Maintainer": "Yihui Xie ", + "Repository": "CRAN" }, "tseries": { "Package": "tseries", "Version": "0.10-59", "Source": "Repository", - "Requirements": [ - "graphics", - "jsonlite", - "quadprog", - "quantmod", - "R", + "Title": "Time Series Analysis and Computational Finance", + "Authors@R": "c(person(\"Adrian\", \"Trapletti\", role = \"aut\", email = \"adrian@trapletti.org\"), person(\"Kurt\", \"Hornik\", role = c(\"aut\", \"cre\"), email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Blake\", \"LeBaron\", role = \"ctb\", comment = \"BDS test code\"))", + "Description": "Time series analysis and computational finance.", + "Depends": [ + "R (>= 3.4.0)" + ], + "Imports": [ + "graphics", "stats", "utils", - "zoo" - ] + "quadprog", + "zoo", + "quantmod (>= 0.4-9)", + "jsonlite" + ], + "License": "GPL-2 | GPL-3", + "NeedsCompilation": "yes", + "Author": "Adrian Trapletti [aut], Kurt Hornik [aut, cre] (ORCID: ), Blake LeBaron [ctb] (BDS test code)", + "Maintainer": "Kurt Hornik ", + "Repository": "CRAN" }, "urca": { "Package": "urca", "Version": "1.3-4", "Source": "Repository", - "Requirements": [ - "graphics", - "methods", + "Date": "2024-05-25", + "Title": "Unit Root and Cointegration Tests for Time Series Data", + "Authors@R": "c(person(\"Bernhard\", \"Pfaff\", email = \"bernhard@pfaffikus.de\", role = c(\"aut\", \"cre\")), person(\"Eric\", \"Zivot\",email = \"ezivot@u.washington.edu\", role = \"ctb\"), person(\"Matthieu\", \"Stigler\", role = \"ctb\"))", + "Depends": [ + "R (>= 2.0.0)", + "methods" + ], + "Imports": [ "nlme", - "R", + "graphics", "stats" - ] + ], + "LazyLoad": "yes", + "Description": "Unit root and cointegration tests encountered in applied econometric analysis are implemented.", + "License": "GPL (>= 2)", + "NeedsCompilation": "yes", + "Author": "Bernhard Pfaff [aut, cre], Eric Zivot [ctb], Matthieu Stigler [ctb]", + "Maintainer": "Bernhard Pfaff ", + "Repository": "CRAN" }, "utf8": { "Package": "utf8", @@ -3882,24 +8228,53 @@ "Package": "uuid", "Version": "1.2-1", "Source": "Repository", - "Requirements": [ - "R" - ] + "Title": "Tools for Generating and Handling of UUIDs", + "Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.org, ), Theodore Ts'o [aut, cph] (libuuid)", + "Maintainer": "Simon Urbanek ", + "Authors@R": "c(person(\"Simon\", \"Urbanek\", role=c(\"aut\",\"cre\",\"cph\"), email=\"Simon.Urbanek@r-project.org\", comment=c(\"https://urbanek.org\", ORCID=\"0000-0003-2297-1732\")), person(\"Theodore\",\"Ts'o\", email=\"tytso@thunk.org\", role=c(\"aut\",\"cph\"), comment=\"libuuid\"))", + "Depends": [ + "R (>= 2.9.0)" + ], + "Description": "Tools for generating and handling of UUIDs (Universally Unique Identifiers).", + "License": "MIT + file LICENSE", + "URL": "https://www.rforge.net/uuid", + "BugReports": "https://github.com/s-u/uuid/issues", + "NeedsCompilation": "yes", + "Repository": "CRAN" }, "vcd": { "Package": "vcd", "Version": "1.4-13", "Source": "Repository", - "Requirements": [ - "colorspace", - "grDevices", - "grid", - "lmtest", - "MASS", - "R", + "Title": "Visualizing Categorical Data", + "Authors@R": "c(person(given = \"David\", family = \"Meyer\", role = c(\"aut\", \"cre\"), email = \"David.Meyer@R-project.org\", comment = c(ORCID = \"0000-0002-5196-3048\")),\t person(given = \"Achim\", family = \"Zeileis\", role = \"aut\", email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")), person(given = \"Kurt\", family = \"Hornik\", role = \"aut\", email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(given = \"Florian\", family = \"Gerber\", role = \"ctb\"), person(given = \"Michael\", family = \"Friendly\", role = \"aut\", email = \"friendly@yorku.ca\", comment = c(ORCID = \"0000-0002-3237-0941\")))", + "Description": "Visualization techniques, data sets, summary and inference procedures aimed particularly at categorical data. Special emphasis is given to highly extensible grid graphics. The package was package was originally inspired by the book \"Visualizing Categorical Data\" by Michael Friendly and is now the main support package for a new book, \"Discrete Data Analysis with R\" by Michael Friendly and David Meyer (2015).", + "LazyLoad": "yes", + "LazyData": "yes", + "Depends": [ + "R (>= 2.4.0)", + "grid" + ], + "Suggests": [ + "KernSmooth", + "mvtnorm", + "kernlab", + "HSAUR3", + "coin" + ], + "Imports": [ "stats", - "utils" - ] + "utils", + "MASS", + "grDevices", + "colorspace", + "lmtest" + ], + "License": "GPL-2", + "NeedsCompilation": "no", + "Author": "David Meyer [aut, cre] (), Achim Zeileis [aut] (), Kurt Hornik [aut] (), Florian Gerber [ctb], Michael Friendly [aut] ()", + "Maintainer": "David Meyer ", + "Repository": "CRAN" }, "vctrs": { "Package": "vctrs", @@ -3950,15 +8325,80 @@ "Maintainer": "Davis Vaughan ", "Repository": "CRAN" }, + "vdiffr": { + "Package": "vdiffr", + "Version": "1.0.9", + "Source": "Repository", + "Title": "Visual Regression Testing and Graphical Diffing", + "Authors@R": "c( person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"T Jake\", \"Luciani\", , \"jake@apache.org\", role = \"aut\", comment = \"svglite\"), person(\"Matthieu\", \"Decorde\", , \"matthieu.decorde@ens-lyon.fr\", role = \"aut\", comment = \"svglite\"), person(\"Vaudor\", \"Lise\", , \"lise.vaudor@ens-lyon.fr\", role = \"aut\", comment = \"svglite\"), person(\"Tony\", \"Plate\", role = \"ctb\", comment = \"svglite: Early line dashing code\"), person(\"David\", \"Gohel\", role = \"ctb\", comment = \"svglite: Line dashing code and raster code\"), person(\"Yixuan\", \"Qiu\", role = \"ctb\", comment = \"svglite: Improved styles; polypath implementation\"), person(\"Håkon\", \"Malmedal\", role = \"ctb\", comment = \"svglite: Opacity code\") )", + "Description": "An extension to the 'testthat' package that makes it easy to add graphical unit tests. It provides a Shiny application to manage the test cases.", + "License": "MIT + file LICENSE", + "URL": "https://vdiffr.r-lib.org/, https://github.com/r-lib/vdiffr", + "BugReports": "https://github.com/r-lib/vdiffr/issues", + "Depends": [ + "R (>= 4.0)" + ], + "Imports": [ + "diffobj", + "glue", + "grDevices", + "htmltools", + "lifecycle", + "rlang", + "testthat (>= 3.0.3)", + "xml2 (>= 1.0.0)" + ], + "Suggests": [ + "covr", + "decor", + "ggplot2 (>= 3.2.0)", + "roxygen2", + "withr" + ], + "LinkingTo": [ + "cpp11" + ], + "ByteCompile": "true", + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "SystemRequirements": "libpng", + "NeedsCompilation": "yes", + "Author": "Lionel Henry [aut], Thomas Lin Pedersen [cre, aut] (ORCID: ), Posit Software, PBC [cph, fnd], T Jake Luciani [aut] (svglite), Matthieu Decorde [aut] (svglite), Vaudor Lise [aut] (svglite), Tony Plate [ctb] (svglite: Early line dashing code), David Gohel [ctb] (svglite: Line dashing code and raster code), Yixuan Qiu [ctb] (svglite: Improved styles; polypath implementation), Håkon Malmedal [ctb] (svglite: Opacity code)", + "Maintainer": "Thomas Lin Pedersen ", + "Repository": "CRAN" + }, "vipor": { "Package": "vipor", "Version": "0.4.7", "Source": "Repository", - "Requirements": [ - "graphics", - "R", - "stats" - ] + "Type": "Package", + "Title": "Plot Categorical Data Using Quasirandom Noise and Density Estimates", + "Date": "2023-12-15", + "Author": "Scott Sherrill-Mix, Erik Clarke", + "Maintainer": "Scott Sherrill-Mix ", + "Description": "Generate a violin point plot, a combination of a violin/histogram plot and a scatter plot by offsetting points within a category based on their density using quasirandom noise.", + "License": "GPL (>= 2)", + "LazyData": "True", + "Depends": [ + "R (>= 3.5.0)" + ], + "Imports": [ + "stats", + "graphics" + ], + "Suggests": [ + "testthat", + "beeswarm", + "lattice", + "ggplot2", + "beanplot", + "vioplot", + "ggbeeswarm" + ], + "RoxygenNote": "7.2.3", + "NeedsCompilation": "no", + "Repository": "CRAN" }, "viridisLite": { "Package": "viridisLite", @@ -3988,16 +8428,72 @@ "Author": "Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Antônio Pedro Camargo [ctb, cph], Cédric Scherer [ctb, cph]", "Repository": "CRAN" }, + "waldo": { + "Package": "waldo", + "Version": "0.6.2", + "Source": "Repository", + "Title": "Find Differences Between R Objects", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Compare complex R objects and reveal the key differences. Designed particularly for use in testing packages where being able to quickly isolate key differences makes understanding test failures much easier.", + "License": "MIT + file LICENSE", + "URL": "https://waldo.r-lib.org, https://github.com/r-lib/waldo", + "BugReports": "https://github.com/r-lib/waldo/issues", + "Depends": [ + "R (>= 4.0)" + ], + "Imports": [ + "cli", + "diffobj (>= 0.3.4)", + "glue", + "methods", + "rlang (>= 1.1.0)" + ], + "Suggests": [ + "bit64", + "R6", + "S7", + "testthat (>= 3.0.0)", + "withr", + "xml2" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd]", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" + }, "weibullness": { "Package": "weibullness", "Version": "1.24.1", "Source": "Repository", - "Requirements": [ + "Title": "Goodness-of-Fit Test for Weibull Distribution (Weibullness)", + "Date": "2024-1-9", + "Authors@R": "person(given=\"Chanseok\", family=\"Park\", role = c(\"aut\", \"cre\"), email=\"statpnu@gmail.com\", comment = c(ORCID = \"https://orcid.org/0000-0002-2208-3498\"))", + "Author": "Chanseok Park [aut, cre] ()", + "Maintainer": "Chanseok Park ", + "Depends": [ + "R (>= 4.0)", "graphics", - "methods", - "R", "stats" - ] + ], + "Imports": [ + "methods" + ], + "Suggests": [ + "bsgof" + ], + "Description": "Conducts a goodness-of-fit test for the Weibull distribution (referred to as the weibullness test) and furnishes parameter estimations for both the two-parameter and three-parameter Weibull distributions. Notably, the threshold parameter is derived through correlation from the Weibull plot. Additionally, this package conducts goodness-of-fit assessments for the exponential, Gumbel, and inverse Weibull distributions, accompanied by parameter estimations. For more details, see Park (2017) , Park (2018) , and Park (2023) . This work was supported by the National Research Foundation of Korea (NRF) grants funded by the Korea government (MSIT) (No. 2022R1A2C1091319, RS-2023-00242528).", + "License": "GPL-2 | GPL-3", + "URL": "https://AppliedStat.GitHub.io/R/", + "BugReports": "https://github.com/AppliedStat/R/issues", + "Encoding": "UTF-8", + "LazyData": "yes", + "LazyDataCompression": "xz", + "NeedsCompilation": "no", + "Repository": "CRAN" }, "withr": { "Package": "withr", @@ -4041,58 +8537,219 @@ "Package": "xfun", "Version": "0.56", "Source": "Repository", - "Requirements": [ + "Type": "Package", + "Title": "Supporting Functions for Packages Maintained by 'Yihui Xie'", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\", \"cph\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Wush\", \"Wu\", role = \"ctb\"), person(\"Daijiang\", \"Li\", role = \"ctb\"), person(\"Xianying\", \"Tan\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", role = \"ctb\", email = \"salim-b@pm.me\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Christophe\", \"Dervieux\", role = \"ctb\"), person() )", + "Description": "Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.", + "Depends": [ + "R (>= 3.2.0)" + ], + "Imports": [ "grDevices", - "R", "stats", "tools" - ] + ], + "Suggests": [ + "testit", + "parallel", + "codetools", + "methods", + "rstudioapi", + "tinytex (>= 0.30)", + "mime", + "litedown (>= 0.6)", + "commonmark", + "knitr (>= 1.50)", + "remotes", + "pak", + "curl", + "xml2", + "jsonlite", + "magick", + "yaml", + "data.table", + "qs2" + ], + "License": "MIT + file LICENSE", + "URL": "https://github.com/yihui/xfun", + "BugReports": "https://github.com/yihui/xfun/issues", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "VignetteBuilder": "litedown", + "NeedsCompilation": "yes", + "Author": "Yihui Xie [aut, cre, cph] (ORCID: , URL: https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (ORCID: ), Christophe Dervieux [ctb]", + "Maintainer": "Yihui Xie ", + "Repository": "CRAN" }, "xml2": { "Package": "xml2", "Version": "1.5.2", "Source": "Repository", - "Requirements": [ + "Title": "Parse XML", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Jeroen\", \"Ooms\", email = \"jeroenooms@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Foundation\", role = \"ctb\", comment = \"Copy of R-project homepage cached as example\") )", + "Description": "Bindings to 'libxml2' for working with XML data using a simple, consistent interface based on 'XPath' expressions. Also supports XML schema validation; for 'XSLT' transformations see the 'xslt' package.", + "License": "MIT + file LICENSE", + "URL": "https://xml2.r-lib.org, https://r-lib.r-universe.dev/xml2", + "BugReports": "https://github.com/r-lib/xml2/issues", + "Depends": [ + "R (>= 3.6.0)" + ], + "Imports": [ "cli", "methods", - "R", - "rlang" - ] + "rlang (>= 1.1.0)" + ], + "Suggests": [ + "covr", + "curl", + "httr", + "knitr", + "mockery", + "rmarkdown", + "testthat (>= 3.2.0)", + "xslt" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "SystemRequirements": "libxml2: libxml2-dev (deb), libxml2-devel (rpm)", + "Collate": "'S4.R' 'as_list.R' 'xml_parse.R' 'as_xml_document.R' 'classes.R' 'format.R' 'import-standalone-obj-type.R' 'import-standalone-purrr.R' 'import-standalone-types-check.R' 'init.R' 'nodeset_apply.R' 'paths.R' 'utils.R' 'xml2-package.R' 'xml_attr.R' 'xml_children.R' 'xml_document.R' 'xml_find.R' 'xml_missing.R' 'xml_modify.R' 'xml_name.R' 'xml_namespaces.R' 'xml_node.R' 'xml_nodeset.R' 'xml_path.R' 'xml_schema.R' 'xml_serialize.R' 'xml_structure.R' 'xml_text.R' 'xml_type.R' 'xml_url.R' 'xml_write.R' 'zzz.R'", + "Config/testthat/edition": "3", + "NeedsCompilation": "yes", + "Author": "Hadley Wickham [aut], Jim Hester [aut], Jeroen Ooms [aut, cre], Posit Software, PBC [cph, fnd], R Foundation [ctb] (Copy of R-project homepage cached as example)", + "Maintainer": "Jeroen Ooms ", + "Repository": "CRAN" }, "xts": { "Package": "xts", "Version": "0.14.1", "Source": "Repository", - "Requirements": [ - "methods", - "R", + "Type": "Package", + "Title": "eXtensible Time Series", + "Authors@R": "c( person(given=c(\"Jeffrey\",\"A.\"), family=\"Ryan\", role=c(\"aut\",\"cph\")), person(given=c(\"Joshua\",\"M.\"), family=\"Ulrich\", role=c(\"cre\",\"aut\"), email=\"josh.m.ulrich@gmail.com\"), person(given=\"Ross\", family=\"Bennett\", role=\"ctb\"), person(given=\"Corwin\", family=\"Joy\", role=\"ctb\") )", + "Depends": [ + "R (>= 3.6.0)", + "zoo (>= 1.7-12)" + ], + "Imports": [ + "methods" + ], + "LinkingTo": [ "zoo" - ] + ], + "Suggests": [ + "timeSeries", + "timeDate", + "tseries", + "chron", + "tinytest" + ], + "LazyLoad": "yes", + "Description": "Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.", + "License": "GPL (>= 2)", + "URL": "https://joshuaulrich.github.io/xts/, https://github.com/joshuaulrich/xts", + "BugReports": "https://github.com/joshuaulrich/xts/issues", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Jeffrey A. Ryan [aut, cph], Joshua M. Ulrich [cre, aut], Ross Bennett [ctb], Corwin Joy [ctb]", + "Maintainer": "Joshua M. Ulrich ", + "Repository": "CRAN" }, "yaml": { "Package": "yaml", "Version": "2.3.12", "Source": "Repository", - "Requirements": [] + "Type": "Package", + "Title": "Methods to Convert R Data to YAML and Back", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"cre\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Shawn\", \"Garbett\", , \"shawn.garbett@vumc.org\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4079-5621\")), person(\"Jeremy\", \"Stephens\", role = c(\"aut\", \"ctb\")), person(\"Kirill\", \"Simonov\", role = \"aut\"), person(\"Yihui\", \"Xie\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Zhuoer\", \"Dong\", role = \"ctb\"), person(\"Jeffrey\", \"Horner\", role = \"ctb\"), person(\"reikoch\", role = \"ctb\"), person(\"Will\", \"Beasley\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5613-5006\")), person(\"Brendan\", \"O'Connor\", role = \"ctb\"), person(\"Michael\", \"Quinn\", role = \"ctb\"), person(\"Charlie\", \"Gao\", role = \"ctb\"), person(c(\"Gregory\", \"R.\"), \"Warnes\", role = \"ctb\"), person(c(\"Zhian\", \"N.\"), \"Kamvar\", role = \"ctb\") )", + "Description": "Implements the 'libyaml' 'YAML' 1.1 parser and emitter () for R.", + "License": "BSD_3_clause + file LICENSE", + "URL": "https://yaml.r-lib.org, https://github.com/r-lib/yaml/", + "BugReports": "https://github.com/r-lib/yaml/issues", + "Suggests": [ + "knitr", + "rmarkdown", + "testthat (>= 3.0.0)" + ], + "Config/testthat/edition": "3", + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "VignetteBuilder": "knitr", + "NeedsCompilation": "yes", + "Author": "Hadley Wickham [cre] (ORCID: ), Shawn Garbett [ctb] (ORCID: ), Jeremy Stephens [aut, ctb], Kirill Simonov [aut], Yihui Xie [ctb] (ORCID: ), Zhuoer Dong [ctb], Jeffrey Horner [ctb], reikoch [ctb], Will Beasley [ctb] (ORCID: ), Brendan O'Connor [ctb], Michael Quinn [ctb], Charlie Gao [ctb], Gregory R. Warnes [ctb], Zhian N. Kamvar [ctb]", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" }, "zip": { "Package": "zip", "Version": "2.3.3", "Source": "Repository", - "Requirements": [] + "Title": "Cross-Platform 'zip' Compression", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Kuba\", \"Podgórski\", role = \"ctb\"), person(\"Rich\", \"Geldreich\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Description": "Cross-Platform 'zip' Compression Library. A replacement for the 'zip' function, that does not require any additional external tools on any platform.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/r-lib/zip, https://r-lib.github.io/zip/", + "BugReports": "https://github.com/r-lib/zip/issues", + "Suggests": [ + "covr", + "pillar", + "processx", + "R6", + "testthat", + "withr" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-05-07", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2.9000", + "NeedsCompilation": "yes", + "Author": "Gábor Csárdi [aut, cre], Kuba Podgórski [ctb], Rich Geldreich [ctb], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" }, "zoo": { "Package": "zoo", "Version": "1.8-15", "Source": "Repository", - "Requirements": [ + "Date": "2025-12-15", + "Title": "S3 Infrastructure for Regular and Irregular Time Series (Z's Ordered Observations)", + "Authors@R": "c(person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")), person(given = \"Gabor\", family = \"Grothendieck\", role = \"aut\", email = \"ggrothendieck@gmail.com\"), person(given = c(\"Jeffrey\", \"A.\"), family = \"Ryan\", role = \"aut\", email = \"jeff.a.ryan@gmail.com\"), person(given = c(\"Joshua\", \"M.\"), family = \"Ulrich\", role = \"ctb\", email = \"josh.m.ulrich@gmail.com\"), person(given = \"Felix\", family = \"Andrews\", role = \"ctb\", email = \"felix@nfrac.org\"))", + "Description": "An S3 class with methods for totally ordered indexed observations. It is particularly aimed at irregular time series of numeric vectors/matrices and factors. zoo's key design goals are independence of a particular index/date/time class and consistency with ts and base R by providing methods to extend standard generics.", + "Depends": [ + "R (>= 3.1.0)", + "stats" + ], + "Suggests": [ + "AER", + "coda", + "chron", + "ggplot2 (>= 3.5.0)", + "mondate", + "scales", + "stinepack", + "strucchange", + "timeDate", + "timeSeries", + "tinyplot", + "tis", + "tseries", + "xts" + ], + "Imports": [ + "utils", "graphics", "grDevices", - "lattice", - "R", - "stats", - "utils" - ] + "lattice (>= 0.20-27)" + ], + "License": "GPL-2 | GPL-3", + "URL": "https://zoo.R-Forge.R-project.org/", + "NeedsCompilation": "yes", + "Author": "Achim Zeileis [aut, cre] (ORCID: ), Gabor Grothendieck [aut], Jeffrey A. Ryan [aut], Joshua M. Ulrich [ctb], Felix Andrews [ctb]", + "Maintainer": "Achim Zeileis ", + "Repository": "CRAN" } } } diff --git a/tests/testthat.R b/tests/testthat.R index b4cf753e..8006c7d4 100644 --- a/tests/testthat.R +++ b/tests/testthat.R @@ -22,6 +22,7 @@ jaspTools::runTestsTravis(module = getwd()) # jaspTools::testAnalysis("timeWeightedCharts") # jaspTools::testAnalysis("variablesChartsIndividuals") # jaspTools::testAnalysis("variablesChartsSubgroups") +# jaspTools::testAnalysis("multivariateControlCharts") diff --git a/tests/testthat/_snaps/multivariateControlCharts/hotelling-t2-chart-custom-cl.svg b/tests/testthat/_snaps/multivariateControlCharts/hotelling-t2-chart-custom-cl.svg new file mode 100644 index 00000000..ab60e195 --- /dev/null +++ b/tests/testthat/_snaps/multivariateControlCharts/hotelling-t2-chart-custom-cl.svg @@ -0,0 +1,130 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +UCL = 10.042 + +LCL = 0 + + + + + + +0 +2 +4 +6 +8 +10 +12 + + + + + + + + + + + + + +1 +5 +10 +15 +20 +Sample +Hotelling T² +hotelling-t2-chart-custom-cl + + diff --git a/tests/testthat/_snaps/multivariateControlCharts/hotelling-t2-chart-example1.svg b/tests/testthat/_snaps/multivariateControlCharts/hotelling-t2-chart-example1.svg new file mode 100644 index 00000000..8472e3b7 --- /dev/null +++ b/tests/testthat/_snaps/multivariateControlCharts/hotelling-t2-chart-example1.svg @@ -0,0 +1,128 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +UCL = 8.286 + +LCL = 0 + + + + + + +0 +2 +4 +6 +8 +10 + + + + + + + + + + + + +1 +5 +10 +15 +20 +Sample +Hotelling T² +hotelling-t2-chart-example1 + + diff --git a/tests/testthat/_snaps/multivariateControlCharts/hotelling-t2-chart-example3.svg b/tests/testthat/_snaps/multivariateControlCharts/hotelling-t2-chart-example3.svg new file mode 100644 index 00000000..fcda3cb4 --- /dev/null +++ b/tests/testthat/_snaps/multivariateControlCharts/hotelling-t2-chart-example3.svg @@ -0,0 +1,166 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +UCL = 11.121 + +LCL = 0 + + + + + + +0 +2 +4 +6 +8 +10 +12 +14 + + + + + + + + + + + + + + + + +1 +5 +10 +15 +20 +25 +30 +Sample +Hotelling T² +hotelling-t2-chart-example3 + + diff --git a/tests/testthat/_snaps/multivariateControlCharts/hotelling-t2-chart-phased.svg b/tests/testthat/_snaps/multivariateControlCharts/hotelling-t2-chart-phased.svg new file mode 100644 index 00000000..67856ba7 --- /dev/null +++ b/tests/testthat/_snaps/multivariateControlCharts/hotelling-t2-chart-phased.svg @@ -0,0 +1,105 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +UCL = 7.595 + +UCL = 18.418 + +LCL = 0 + +LCL = 0 +Training (Training) +Test + + + + + + +0 +5 +10 +15 +20 + + + + + + + + + + + + +1 +5 +10 +15 +20 +25 +Sample +Hotelling T² +hotelling-t2-chart-phased + + diff --git a/tests/testthat/datasets/multivariateControlCharts/montgomeryExample1.csv b/tests/testthat/datasets/multivariateControlCharts/montgomeryExample1.csv new file mode 100644 index 00000000..3c8c8530 --- /dev/null +++ b/tests/testthat/datasets/multivariateControlCharts/montgomeryExample1.csv @@ -0,0 +1,21 @@ +Strength,Diameter,Timestamp +115.25,1.04,2025-01-06 +115.91,1.06,2025-01-13 +115.05,1.09,2025-01-20 +116.21,1.05,2025-01-27 +115.9,1.07,2025-02-03 +115.55,1.06,2025-02-10 +114.98,1.05,2025-02-17 +115.25,1.1,2025-02-24 +116.15,1.09,2025-03-03 +115.92,1.05,2025-03-10 +115.75,0.99,2025-03-17 +114.9,1.06,2025-03-24 +116.01,1.05,2025-03-31 +115.83,1.07,2025-04-07 +115.29,1.11,2025-04-14 +115.63,1.04,2025-04-21 +115.47,1.03,2025-04-28 +115.58,1.05,2025-05-05 +115.72,1.06,2025-05-12 +115.4,1.04,2025-05-19 diff --git a/tests/testthat/datasets/multivariateControlCharts/montgomeryExample3.csv b/tests/testthat/datasets/multivariateControlCharts/montgomeryExample3.csv new file mode 100644 index 00000000..e843adc3 --- /dev/null +++ b/tests/testthat/datasets/multivariateControlCharts/montgomeryExample3.csv @@ -0,0 +1,31 @@ +x1,x2,x3,x4,Timestamp +10,20.7,13.6,15.5,2025-01-06 +10.5,19.9,18.1,14.8,2025-01-13 +9.7,20,16.1,16.5,2025-01-20 +9.8,20.2,19.1,17.1,2025-01-27 +11.7,21.5,19.8,18.3,2025-02-03 +11,20.9,10.3,13.8,2025-02-10 +8.7,18.8,16.9,16.8,2025-02-17 +9.5,19.3,15.3,12.2,2025-02-24 +10.1,19.4,16.2,15.8,2025-03-03 +9.5,19.6,13.6,14.5,2025-03-10 +10.5,20.3,17,16.5,2025-03-17 +9.2,19,11.5,16.3,2025-03-24 +11.3,21.6,14,18.7,2025-03-31 +10,19.8,14,15.9,2025-04-07 +8.5,19.2,17.4,15.8,2025-04-14 +9.7,20.1,10,16.6,2025-04-21 +8.3,18.4,12.5,14.2,2025-04-28 +11.9,21.8,14.1,16.2,2025-05-05 +10.3,20.5,15.6,15.1,2025-05-12 +8.9,19,8.5,14.7,2025-05-19 +9.9,20,15.4,15.9,2025-05-26 +8.7,19,9.9,16.8,2025-06-02 +11.5,21.8,19.3,12.1,2025-06-09 +15.9,24.6,14.7,15.3,2025-06-16 +12.6,23.9,17.1,14.2,2025-06-23 +14.9,25,16.3,16.6,2025-06-30 +9.9,23.7,11.9,18.1,2025-07-07 +12.8,26.3,13.5,13.7,2025-07-14 +13.1,26.1,10.9,16.8,2025-07-21 +9.8,25.8,14.8,15,2025-07-28 diff --git a/tests/testthat/datasets/multivariateControlCharts/phasedExample.csv b/tests/testthat/datasets/multivariateControlCharts/phasedExample.csv new file mode 100644 index 00000000..fbc85e7b --- /dev/null +++ b/tests/testthat/datasets/multivariateControlCharts/phasedExample.csv @@ -0,0 +1,26 @@ +Strength,Diameter,Phase,Timestamp +116.12,1.075,Training,2025-01-06 +115.39,1.05,Training,2025-01-13 +115.74,0.986,Training,2025-01-20 +115.84,0.992,Training,2025-01-27 +115.75,1.094,Training,2025-02-03 +115.56,1.05,Training,2025-02-10 +116.17,1.01,Training,2025-02-17 +115.56,1.053,Training,2025-02-24 +116.37,1.091,Training,2025-03-03 +115.58,1.109,Training,2025-03-10 +116.1,1.046,Training,2025-03-17 +116.47,1.051,Training,2025-03-24 +115.07,1.01,Training,2025-03-31 +115.49,1.07,Training,2025-04-07 +115.55,1.041,Training,2025-04-14 +115.77,1.064,Test,2025-04-21 +115.87,1.048,Test,2025-04-28 +115.99,1.078,Test,2025-05-05 +115.37,1.038,Test,2025-05-12 +115.79,1.021,Test,2025-05-19 +115.65,1.092,Test,2025-05-26 +116,1.058,Test,2025-06-02 +115.98,1.119,Test,2025-06-09 +115.38,1.068,Test,2025-06-16 +116.31,1.098,Test,2025-06-23 diff --git a/tests/testthat/test-multivariateControlCharts.R b/tests/testthat/test-multivariateControlCharts.R new file mode 100644 index 00000000..c534b1fa --- /dev/null +++ b/tests/testthat/test-multivariateControlCharts.R @@ -0,0 +1,208 @@ +context("[Quality Control] Multivariate Control Charts") +.numDecimals <- 2 +set.seed(1) + +# Montgomery Example 1: 2 variables, 20 observations #### +# Reference: Montgomery, D.C., Introduction to Statistical Quality Control, 6th Ed, Table 11.1 + +options <- analysisOptions("multivariateControlCharts") +options$testSet <- "jaspDefault" +options$variables <- c("Strength", "Diameter") +options$confidenceLevelAutomatic <- TRUE +options$centerTable <- TRUE +options$covarianceMatrixTable <- TRUE +options$tSquaredValuesTable <- TRUE +results <- runAnalysis("multivariateControlCharts", + testthat::test_path("datasets/multivariateControlCharts/montgomeryExample1.csv"), options) + +test_that("1.1 Montgomery Ex1 - T² chart is created", { + plotName <- results[["results"]][["tsqChart"]][["data"]] + testPlot <- results[["state"]][["figures"]][[plotName]][["obj"]] + jaspTools::expect_equal_plots(testPlot, "hotelling-t2-chart-example1") +}) + +test_that("1.2 Montgomery Ex1 - Summary table", { + table <- results[["results"]][["summaryTable"]][["data"]] + jaspTools::expect_equal_tables(table, + list(0.99460729, 0.000102579734072022, 0, 20, 2, 8.28592787636626)) +}) + +test_that("1.3 Montgomery Ex1 - Center table", { + table <- results[["results"]][["centerTable"]][["data"]] + jaspTools::expect_equal_tables(table, + list(115.5875, "Strength", + 1.058, "Diameter")) +}) + +test_that("1.4 Montgomery Ex1 - Covariance matrix", { + table <- results[["results"]][["covarianceTable"]][["data"]] + jaspTools::expect_equal_tables(table, + list(-0.00146842105263156, 0.147188157894736, "Strength", + 0.000711578947368422, -0.00146842105263156, "Diameter")) +}) + +test_that("1.5 Montgomery Ex1 - T² values table", { + table <- results[["results"]][["tsqValuesTable"]][["data"]] + expect_equal(length(table), 20) + statuses <- sapply(table, function(x) x$status) + expect_true(all(statuses == "In control")) +}) + +# Montgomery Example 3: 4 variables, 30 observations #### +# Reference: Montgomery, D.C., Introduction to Statistical Quality Control, 6th Ed, Table 11.6 + +options2 <- analysisOptions("multivariateControlCharts") +options2$testSet <- "jaspDefault" +options2$variables <- c("x1", "x2", "x3", "x4") +options2$confidenceLevelAutomatic <- TRUE +options2$covarianceMatrixTable <- FALSE +options2$tSquaredValuesTable <- TRUE +results2 <- runAnalysis("multivariateControlCharts", + "datasets/multivariateControlCharts/montgomeryExample3.csv", options2) + +test_that("2.1 Montgomery Ex3 - T² chart is created", { + plotName <- results2[["results"]][["tsqChart"]][["data"]] + testPlot <- results2[["state"]][["figures"]][[plotName]][["obj"]] + jaspTools::expect_equal_plots(testPlot, "hotelling-t2-chart-example3") +}) + +test_that("2.2 Montgomery Ex3 - Summary table", { + table <- results2[["results"]][["summaryTable"]][["data"]] + jaspTools::expect_equal_tables(table, + list(0.989243661321144, 156.122662346298, 0, 30, 4, 11.1213684523803)) +}) + +test_that("2.3 Montgomery Ex3 - Out of control points detected", { + table <- results2[["results"]][["tsqValuesTable"]][["data"]] + outOfControl <- sapply(table, function(x) x$status == "Out of control") + expect_true(any(outOfControl)) +}) + +# Custom confidence level #### + +options3 <- analysisOptions("multivariateControlCharts") +options3$testSet <- "jaspDefault" +options3$variables <- c("Strength", "Diameter") +options3$confidenceLevelAutomatic <- FALSE +options3$confidenceLevel <- 0.999 +options3$covarianceMatrixTable <- FALSE +options3$tSquaredValuesTable <- FALSE +results3 <- runAnalysis("multivariateControlCharts", + "datasets/multivariateControlCharts/montgomeryExample1.csv", options3) + +test_that("3.1 Custom confidence level - Summary table", { + table <- results3[["results"]][["summaryTable"]][["data"]] + ucl <- table[[1]]$ucl + expect_true(ucl > 8.286) +}) + +test_that("3.2 Custom confidence level - Chart is created", { + plotName <- results3[["results"]][["tsqChart"]][["data"]] + testPlot <- results3[["state"]][["figures"]][[plotName]][["obj"]] + jaspTools::expect_equal_plots(testPlot, "hotelling-t2-chart-custom-cl") +}) + +# Edge case: not ready (no variables assigned) #### + +options4 <- analysisOptions("multivariateControlCharts") +options4$testSet <- "jaspDefault" +options4$variables <- list() +results4 <- runAnalysis("multivariateControlCharts", + "datasets/multivariateControlCharts/montgomeryExample1.csv", options4) + +test_that("4.1 No variables - analysis returns without error", { + expect_true(results4$status != "fatalError" || is.null(results4$status)) +}) + +# Phase I/II: Training-validation split #### + +options5 <- analysisOptions("multivariateControlCharts") +options5$testSet <- "jaspDefault" +options5$variables <- c("Strength", "Diameter") +options5$stage <- "Phase" +options5$trainingLevel <- "Training" +options5$confidenceLevelAutomatic <- TRUE +options5$centerTable <- TRUE +options5$covarianceMatrixTable <- TRUE +options5$tSquaredValuesTable <- TRUE +results5 <- runAnalysis("multivariateControlCharts", + "datasets/multivariateControlCharts/phasedExample.csv", options5) + +test_that("5.1 Phased - T² chart is created", { + plotName <- results5[["results"]][["tsqChart"]][["data"]] + testPlot <- results5[["state"]][["figures"]][[plotName]][["obj"]] + jaspTools::expect_equal_plots(testPlot, "hotelling-t2-chart-phased") +}) + +test_that("5.2 Phased - Summary table has two rows with per-phase limits", { + table <- results5[["results"]][["summaryTable"]][["data"]] + jaspTools::expect_equal_tables(table, + list(0.99460729, 0.000201350315680274, 0, 15, 2, "Training (Training)", + 7.59483590446819, 0.99460729, 0.000201350315680274, 0, 10, 2, + "Test", 18.4177171929513)) +}) + +test_that("5.3 Phased - Center table with training-only footnote", { + table <- results5[["results"]][["centerTable"]][["data"]] + jaspTools::expect_equal_tables(table, + list(115.784, "Strength", + 1.04853333333333, "Diameter")) + footnotes <- results5[["results"]][["centerTable"]][["footnotes"]] + footnoteText <- footnotes[[1]]$text + expect_true(grepl("training phase", footnoteText, ignore.case = TRUE)) +}) + +test_that("5.4 Phased - Covariance table with training-only footnote", { + table <- results5[["results"]][["covarianceTable"]][["data"]] + jaspTools::expect_equal_tables(table, + list(0.00189700000000003, 0.152154285714287, "Strength", + 0.00134698095238095, 0.00189700000000003, "Diameter")) + footnotes <- results5[["results"]][["covarianceTable"]][["footnotes"]] + footnoteText <- footnotes[[1]]$text + expect_true(grepl("training phase", footnoteText, ignore.case = TRUE)) +}) + +test_that("5.5 Phased - T² values table has phase column", { + table <- results5[["results"]][["tsqValuesTable"]][["data"]] + expect_equal(length(table), 25) + phases <- sapply(table, function(x) x$phase) + expect_true(all(phases[1:15] == "Training (Training)")) + expect_true(all(phases[16:25] == "Test")) + statuses <- sapply(table, function(x) x$status) + expect_true(all(statuses == "In control")) +}) + +test_that("5.6 Phased - Training UCL uses Beta, Test UCL uses F prediction limits", { + table <- results5[["results"]][["summaryTable"]][["data"]] + trainingUCL <- table[[1]]$ucl + testUCL <- table[[2]]$ucl + # Test UCL (F prediction) should be larger than training UCL (Beta) + expect_true(testUCL > trainingUCL) +}) + +# Optional timestamp / axis labels #### + +options6 <- analysisOptions("multivariateControlCharts") +options6$testSet <- "jaspDefault" +options6$variables <- c("Strength", "Diameter") +options6$axisLabels <- "Timestamp" +options6$tSquaredValuesTable <- TRUE + +dataset6 <- utils::read.csv("datasets/multivariateControlCharts/montgomeryExample1.csv") +dataset6$Timestamp <- paste0("t", seq_len(nrow(dataset6))) + +results6 <- runAnalysis("multivariateControlCharts", dataset6, options6) + +test_that("6.1 Optional timestamp - x axis title uses timestamp", { + plotName <- results6[["results"]][["tsqChart"]][["data"]] + testPlot <- results6[["state"]][["figures"]][[plotName]][["obj"]] + xScale <- testPlot$scales$get_scales("x") + expect_equal(xScale$name, "Timestamp") +}) + +test_that("6.2 Optional timestamp - T² values table includes timestamp column", { + table <- results6[["results"]][["tsqValuesTable"]][["data"]] + timestamps <- sapply(table, function(x) x$timestamp) + expect_equal(timestamps[1], "t1") + expect_equal(timestamps[length(timestamps)], "t20") +})