Setup scripts for third-party codes live in scripts/setup/. Most install into
$CODE/external and provide an environment module in modules/.
GPEC and MARS need the Intel toolchain with the classic ifort compiler.
Install the compiler together with HDF5 and NetCDF modules:
scripts/setup/compiler_intel.sh
Then install the codes into $CODE/external/intel:
scripts/setup/gpec.sh
scripts/setup/mars.sh
Load them with
module load gpec
module load mars
Do not build GNU Fortran based codes in the same shell.
OMFIT uses its own conda Python environment. Both are installed into
$CODE/external with
deactivate
scripts/setup/omfit.sh
Load and start OMFIT with
deactivate
source $CODE/external/mambaforge/bin/activate omfit
module load omfit
omfit
Do not use the standard Python virtual environment in the same shell.