Connected Components Mask File SNAP

[jschr00]

Hello!

I am currently working on a project which has gone well so far. However at the moment I am struggling with processing connected components files. I am having several issues:

For context, I am processing in a Linux environment, specifically on Ubuntu.

1. The mask generated has values of uniquely 0 as is shown in the photo below:

HERE IS THE CORRESPONDING CODE (stars in paths are done to cover directory names):
Input data seems to be geocoded. Lookup file not needed.

generate_mask.py /home//mint/30mcc_1/inputs/ifgramStack.h5 --nonzero -o /home/**********/mint/30mcc_1/maskConnComp.h5 --update
input ifgramStack file: /home//mint/30mcc_1/inputs/ifgramStack.h5

update mode: ON

1. output file /home/********/mint/30mcc_1/maskConnComp.h5 already exists.
2. output file is NOT newer than input dataset: connectComponent.
   run or skip: run.
   calculate the common mask of pixels with non-zero connectComponent value
   [==================================================] 24/24 0s / 0s
   delete exsited file: /home//mint/30mcc_1/maskConnComp.h5
   create HDF5 file: /home/********/mint/30mcc_1/maskConnComp.h5 with w mode
   create dataset /mask of bool in size of (1215, 1086) with compression=None
   finished writing to /home//mint/30mcc_1/maskConnComp.h5
   time used: 00 mins 0.2 secs.

---

Here is the code for the ifgramStack.h5 output
create HDF5 file /home//mint/30mcc_1/inputs/ifgramStack.h5 with w mode
create dataset /unwrapPhase of <class 'numpy.float32'> in size of (24, 1215, 1086) with compression = None
[==================================================] 20171118_20171130 1s / 0s
create dataset /coherence of <class 'numpy.float32'> in size of (24, 1215, 1086) with compression = None
[==================================================] 20171118_20171130 0s / 0s
create dataset /connectComponent of <class 'numpy.int16'> in size of (24, 1215, 1086) with compression = lzf
[==================================================] 20171118_20171130 1s / 0s
create dataset /wrapPhase of <class 'numpy.float32'> in size of (24, 1215, 1086) with compression = None
[==================================================] 20171118_20171130 0s / 0s
create dataset /date of <class 'numpy.bytes_'> in size of (24, 2)
create dataset /bperp of <class 'numpy.float32'> in size of (24,)
create dataset /dropIfgram of <class 'numpy.bool'> in size of (24,)
add extra metadata: {'PROJECT_NAME': '30mcc_1'}
update metadata due to subset
update LENGTH, WIDTH, Y/XMAX
update/add SUBSET_XMIN/YMIN/XMAX/YMAX: 0/0/1086/1215
update Y/X_FIRST
Finished writing to /home/**/mint/30mcc_1/inputs/ifgramStack.h5

I believe this may be affecting subsequent steps where I have gotten notifications saying that my generated reference point is not in the connected components mask (phase unwrapping error correction step), and also that input reference point is in a masked out area (reference point step).

I have tried doing many things according to other issues opened, though I am still having errors. I was thinking it might have to do with the data type, though I haven't found the information for which files to change.

When running the configuration without connected components, processing fully completes.

Thank you, and I am happy to send over other information for a proper diagnostic.