In snpEff it looks like there is a -cancerSamples option so that we don't need to use bcftools to add the pedigree line: -cancerSamples <file> : Two column TXT file defining 'oringinal \t derived' samples.
In snpEff it looks like there is a -cancerSamples option so that we don't need to use bcftools to add the pedigree line:
-cancerSamples : Two column TXT file defining 'oringinal \t derived' samples.