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{
"R": {
"Version": "4.5.2",
"Repositories": [
{
"Name": "BioCsoft",
"URL": "https://bioconductor.org/packages/3.21/bioc"
},
{
"Name": "BioCann",
"URL": "https://bioconductor.org/packages/3.21/data/annotation"
},
{
"Name": "BioCexp",
"URL": "https://bioconductor.org/packages/3.21/data/experiment"
},
{
"Name": "BioCworkflows",
"URL": "https://bioconductor.org/packages/3.21/workflows"
},
{
"Name": "BioCbooks",
"URL": "https://bioconductor.org/packages/3.21/books"
},
{
"Name": "CRAN",
"URL": "https://cloud.r-project.org"
},
{
"Name": "INLA",
"URL": "https://inla.r-inla-download.org/R/stable"
}
]
},
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"Version": "3.21"
},
"Packages": {
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"Version": "0.54.0",
"Source": "Bioconductor",
"Title": "S4 generic functions used in Bioconductor",
"Description": "The package defines many S4 generic functions used in Bioconductor.",
"biocViews": "Infrastructure",
"URL": "https://bioconductor.org/packages/BiocGenerics",
"BugReports": "https://github.com/Bioconductor/BiocGenerics/issues",
"License": "Artistic-2.0",
"Encoding": "UTF-8",
"Authors@R": "c( person(\"The Bioconductor Dev Team\", role=\"aut\"), person(\"Hervé\", \"Pagès\", role=c(\"aut\", \"cre\"), email=\"hpages.on.github@gmail.com\", comment=c(ORCID=\"0009-0002-8272-4522\")), person(\"Laurent\", \"Gatto\", role=\"ctb\", email=\"laurent.gatto@uclouvain.be\", comment=c(ORCID=\"0000-0002-1520-2268\")), person(\"Nathaniel\", \"Hayden\", role=\"ctb\"), person(\"James\", \"Hester\", role=\"ctb\"), person(\"Wolfgang\", \"Huber\", role=\"ctb\"), person(\"Michael\", \"Lawrence\", role=\"ctb\"), person(\"Martin\", \"Morgan\", role=\"ctb\", email=\"mtmorgan.xyz@gmail.com\", comment=c(ORCID=\"0000-0002-5874-8148\")), person(\"Valerie\", \"Obenchain\", role=\"ctb\"))",
"Depends": [
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"utils",
"graphics",
"stats",
"generics"
],
"Imports": [
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"utils",
"graphics",
"stats"
],
"Suggests": [
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"S4Vectors",
"IRanges",
"S4Arrays",
"SparseArray",
"DelayedArray",
"HDF5Array",
"GenomicRanges",
"pwalign",
"Rsamtools",
"AnnotationDbi",
"affy",
"affyPLM",
"DESeq2",
"flowClust",
"MSnbase",
"annotate",
"MultiAssayExperiment",
"RUnit"
],
"Collate": "S3-classes-as-S4-classes.R utils.R normarg-utils.R replaceSlots.R aperm.R append.R as.data.frame.R as.list.R as.vector.R cbind.R do.call.R duplicated.R eval.R Extremes.R format.R funprog.R get.R grep.R is.unsorted.R lapply.R mapply.R match.R mean.R nrow.R order.R paste.R rank.R rep.R row_colnames.R saveRDS.R sort.R start.R subset.R t.R table.R tapply.R unique.R unlist.R unsplit.R which.R which.min.R relist.R boxplot.R image.R density.R IQR.R mad.R residuals.R var.R weights.R xtabs.R setops.R annotation.R combine.R containsOutOfMemoryData.R dbconn.R dge.R dims.R fileName.R longForm.R normalize.R Ontology.R organism_species.R paste2.R path.R plotMA.R plotPCA.R score.R strand.R toTable.R type.R updateObject.R testPackage.R zzz.R",
"git_url": "https://git.bioconductor.org/packages/BiocGenerics",
"git_branch": "RELEASE_3_21",
"git_last_commit": "75c4815",
"git_last_commit_date": "2025-04-15",
"Repository": "Bioconductor 3.21",
"NeedsCompilation": "no",
"Author": "The Bioconductor Dev Team [aut], Hervé Pagès [aut, cre] (ORCID: <https://orcid.org/0009-0002-8272-4522>), Laurent Gatto [ctb] (ORCID: <https://orcid.org/0000-0002-1520-2268>), Nathaniel Hayden [ctb], James Hester [ctb], Wolfgang Huber [ctb], Michael Lawrence [ctb], Martin Morgan [ctb] (ORCID: <https://orcid.org/0000-0002-5874-8148>), Valerie Obenchain [ctb]",
"Maintainer": "Hervé Pagès <hpages.on.github@gmail.com>"
},
"BiocManager": {
"Package": "BiocManager",
"Version": "1.30.25",
"Source": "Repository",
"Title": "Access the Bioconductor Project Package Repository",
"Description": "A convenient tool to install and update Bioconductor packages.",
"Authors@R": "c( person(\"Martin\", \"Morgan\", email = \"martin.morgan@roswellpark.org\", role = \"aut\", comment = c(ORCID = \"0000-0002-5874-8148\")), person(\"Marcel\", \"Ramos\", email = \"marcel.ramos@sph.cuny.edu\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-3242-0582\")))",
"Imports": [
"utils"
],
"Suggests": [
"BiocVersion",
"BiocStyle",
"remotes",
"rmarkdown",
"testthat",
"withr",
"curl",
"knitr"
],
"URL": "https://bioconductor.github.io/BiocManager/",
"BugReports": "https://github.com/Bioconductor/BiocManager/issues",
"VignetteBuilder": "knitr",
"License": "Artistic-2.0",
"Encoding": "UTF-8",
"RoxygenNote": "7.3.1",
"NeedsCompilation": "no",
"Author": "Martin Morgan [aut] (<https://orcid.org/0000-0002-5874-8148>), Marcel Ramos [aut, cre] (<https://orcid.org/0000-0002-3242-0582>)",
"Maintainer": "Marcel Ramos <marcel.ramos@sph.cuny.edu>",
"Repository": "CRAN"
},
"BiocVersion": {
"Package": "BiocVersion",
"Version": "3.21.1",
"Source": "Bioconductor",
"Title": "Set the appropriate version of Bioconductor packages",
"Description": "This package provides repository information for the appropriate version of Bioconductor.",
"Authors@R": "c( person(\"Martin\", \"Morgan\", email = \"martin.morgan@roswellpark.org\", role = \"aut\"), person(\"Marcel\", \"Ramos\", email = \"marcel.ramos@sph.cuny.edu\", role = \"ctb\"), person(\"Bioconductor\", \"Package Maintainer\", email = \"maintainer@bioconductor.org\", role = c(\"ctb\", \"cre\")))",
"biocViews": "Infrastructure",
"Depends": [
"R (>= 4.5.0)"
],
"License": "Artistic-2.0",
"Encoding": "UTF-8",
"RoxygenNote": "6.0.1",
"git_url": "https://git.bioconductor.org/packages/BiocVersion",
"git_branch": "devel",
"git_last_commit": "1e5e5af",
"git_last_commit_date": "2024-10-29",
"Repository": "Bioconductor 3.21",
"NeedsCompilation": "no",
"Author": "Martin Morgan [aut], Marcel Ramos [ctb], Bioconductor Package Maintainer [ctb, cre]",
"Maintainer": "Bioconductor Package Maintainer <maintainer@bioconductor.org>"
},
"DBI": {
"Package": "DBI",
"Version": "1.2.3",
"Source": "Repository",
"Title": "R Database Interface",
"Date": "2024-06-02",
"Authors@R": "c( person(\"R Special Interest Group on Databases (R-SIG-DB)\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\") )",
"Description": "A database interface definition for communication between R and relational database management systems. All classes in this package are virtual and need to be extended by the various R/DBMS implementations.",
"License": "LGPL (>= 2.1)",
"URL": "https://dbi.r-dbi.org, https://github.com/r-dbi/DBI",
"BugReports": "https://github.com/r-dbi/DBI/issues",
"Depends": [
"methods",
"R (>= 3.0.0)"
],
"Suggests": [
"arrow",
"blob",
"covr",
"DBItest",
"dbplyr",
"downlit",
"dplyr",
"glue",
"hms",
"knitr",
"magrittr",
"nanoarrow (>= 0.3.0.1)",
"RMariaDB",
"rmarkdown",
"rprojroot",
"RSQLite (>= 1.1-2)",
"testthat (>= 3.0.0)",
"vctrs",
"xml2"
],
"VignetteBuilder": "knitr",
"Config/autostyle/scope": "line_breaks",
"Config/autostyle/strict": "false",
"Config/Needs/check": "r-dbi/DBItest",
"Encoding": "UTF-8",
"RoxygenNote": "7.3.1",
"Config/Needs/website": "r-dbi/DBItest, r-dbi/dbitemplate, adbi, AzureKusto, bigrquery, DatabaseConnector, dittodb, duckdb, implyr, lazysf, odbc, pool, RAthena, IMSMWU/RClickhouse, RH2, RJDBC, RMariaDB, RMySQL, RPostgres, RPostgreSQL, RPresto, RSQLite, sergeant, sparklyr, withr",
"Config/testthat/edition": "3",
"NeedsCompilation": "no",
"Author": "R Special Interest Group on Databases (R-SIG-DB) [aut], Hadley Wickham [aut], Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>), R Consortium [fnd]",
"Maintainer": "Kirill Müller <kirill@cynkra.com>",
"Repository": "CRAN"
},
"INLA": {
"Package": "INLA",
"Version": "25.10.19",
"Source": "Repository",
"Type": "Package",
"Title": "Full Bayesian Analysis of Latent Gaussian Models using Integrated Nested Laplace Approximations",
"Authors@R": "c( person(\"Havard\", \"Rue\", email = \"hrue@r-inla.org\", role = c(\"cre\",\"aut\")), person(\"Finn\", \"Lindgren\", email = \"finn.lindgren@gmail.com\", role = \"aut\"), person(\"Elias\", \"Teixeira Krainski\", email = \"elias@r-inla.org\", role = \"aut\"), person(\"Sara\", \"Martino\", email = \"saramartino0@gmail.com\", role = \"ctb\"), person(\"Haakon\", \"Bakka\", email = \"bakka@r-inla.org\", role = \"ctb\"), person(\"Daniel\", \"Simpson\", email = \"dp.simpson@gmail.com\", role = \"ctb\"), person(\"Andrea\", \"Riebler\", email = \"andrea.riebler@math.ntnu.no\", role = \"ctb\"), person(\"Geir-Arne\", \"Fuglstad\", email = \"geirarne.fulgstad@gmail.com\", role = \"ctb\"), person(\"Cristian\", \"Chiuchiolo\", email = \"cristian.chiuchiolo@kaust.edu.sa\", role = \"ctb\"))",
"Description": "Full Bayesian analysis of latent Gaussian models using Integrated Nested Laplace Approximaxion. It is a front-end to the inla-program.",
"Additional_repositories": "http://inlabru-org.r-universe.dev/",
"Depends": [
"R (>= 3.5)",
"Matrix (>= 1.3-0)"
],
"Imports": [
"graphics",
"grDevices",
"fmesher (>= 0.5.0)",
"lifecycle",
"methods",
"parallel",
"rlang",
"splines",
"stats",
"utils",
"withr",
"MatrixModels"
],
"Suggests": [
"compositions",
"Deriv",
"Ecdat",
"Rgraphviz",
"deldir",
"devtools",
"doParallel",
"dplyr",
"evd",
"fastGHQuad",
"fields",
"ggplot2",
"ggpubr",
"gsl",
"graph",
"gridExtra",
"knitr",
"markdown",
"MASS",
"matrixStats",
"mlogit",
"mvtnorm",
"numDeriv",
"pixmap",
"rgl",
"rmarkdown",
"runjags",
"sf",
"shiny",
"sn",
"sp (>= 1.6-0)",
"spdep",
"splancs",
"terra",
"tidyterra",
"testthat",
"tools",
"INLAspacetime"
],
"VignetteBuilder": "knitr",
"BuildVignettes": "true",
"LazyData": "true",
"License": "MIT + file LICENSE",
"RoxygenNote": "7.3.3",
"Encoding": "UTF-8",
"StagedInstall": "no",
"Collate": "'00000.R' 'INLA-package.R' 'agaussian.R' 'ar.R' 'barrier.R' 'binary.R' 'binary.install.R' 'cgeneric.R' 'changelog.R' 'cloglike.R' 'collect.results.R' 'compare.results.R' 'control.R' 'coxph.R' 'cpo.R' 'create.data.file.R' 'cut.R' 'debug.graph.R' 'dev.new.R' 'display.matrix.R' 'doc.R' 'dryrun.R' 'expand.dataframe.R' 'export-class.R' 'external-package.R' 'f.R' 'fgn.R' 'finn.R' 'fmesher-io.R' 'fmesher-transition.R' 'fmesher.R' 'graph.convert.R' 'graph.matrix.R' 'group.R' 'group.cv.R' 'hyper.R' 'hyperpar.R' 'idx.R' 'iidkd.R' 'inla.R' 'inla.call.R' 'inlaEnv.R' 'interpret.formula.R' 'jmarginal.R' 'jp.R' 'knmodels.R' 'knmodels.sample.R' 'lattice2node.R' 'lincomb.R' 'link-functions.R' 'list-models.R' 'load.R' 'marginal.R' 'mdata.R' 'merge.R' 'mesh.R' 'mesh.components.R' 'meshassessment.R' 'meshbuilder.R' 'model-wrapper.R' 'models-generate.R' 'models.R' 'models_documentation.R' 'nmix.lambda.fitted.R' 'obsolete.R' 'options.R' 'os.R' 'over_sp_mesh.R' 'pardiso.R' 'pc-alphaw.R' 'pc-ar.R' 'pc-bym.R' 'pc-cor0.R' 'pc-cor1.R' 'pc-cormat.R' 'pc-gamma.R' 'pc-gammacount.R' 'pc-gev.R' 'pc-multvar.R' 'pc-prec.R' 'pc-prw2-range.R' 'pc-sn.R' 'pc-t.R' 'pc-vm0.R' 'pc-vminf.R' 'pin.R' 'plot.R' 'posterior.sample.R' 'print.R' 'priors.used.R' 'prune.R' 'q.R' 'qinv.R' 'qreordering.R' 'qsample.R' 'qsolve.R' 'quantile-regression.R' 'read.graph.R' 'remote.R' 'reorderings.R' 'rerun.R' 'residuals.R' 'rgeneric.R' 'rprior.R' 'sampler.R' 'sandbox.R' 'scale.model.R' 'scopy.define.R' 'scopy.summary.R' 'sections.R' 'set.default.arguments.R' 'sm.R' 'spde.common.R' 'spde1.R' 'spde2.R' 'spde3.R' 'spmesh.R' 'stack.R' 'startup.R' 'summary.R' 'surv.R' 'upgrade.R' 'utils.R' 'version.R'",
"Roxygen": "list(markdown = TRUE)",
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"Title": "Functions for Kernel Smoothing Supporting Wand & Jones (1995)",
"Authors@R": "c(person(\"Matt\", \"Wand\", role = \"aut\", email = \"Matt.Wand@uts.edu.au\"), person(\"Cleve\", \"Moler\", role = \"ctb\", comment = \"LINPACK routines in src/d*\"), person(\"Brian\", \"Ripley\", role = c(\"trl\", \"cre\", \"ctb\"), email = \"Brian.Ripley@R-project.org\", comment = \"R port and updates\"))",
"Note": "Maintainers are not available to give advice on using a package they did not author.",
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"Author": "Matt Wand [aut], Cleve Moler [ctb] (LINPACK routines in src/d*), Brian Ripley [trl, cre, ctb] (R port and updates)",
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"Revision": "$Rev: 3681 $",
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"Description": "Functions and datasets to support Venables and Ripley, \"Modern Applied Statistics with S\" (4th edition, 2002).",
"Title": "Support Functions and Datasets for Venables and Ripley's MASS",
"LazyData": "yes",
"ByteCompile": "yes",
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"URL": "http://www.stats.ox.ac.uk/pub/MASS4/",
"Contact": "<MASS@stats.ox.ac.uk>",
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"Author": "Brian Ripley [aut, cre, cph], Bill Venables [aut, cph], Douglas M. Bates [ctb], Kurt Hornik [trl] (partial port ca 1998), Albrecht Gebhardt [trl] (partial port ca 1998), David Firth [ctb] (support functions for polr)",
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"Date": "2025-08-27",
"Priority": "recommended",
"Title": "Sparse and Dense Matrix Classes and Methods",
"Description": "A rich hierarchy of sparse and dense matrix classes, including general, symmetric, triangular, and diagonal matrices with numeric, logical, or pattern entries. Efficient methods for operating on such matrices, often wrapping the 'BLAS', 'LAPACK', and 'SuiteSparse' libraries.",
"License": "GPL (>= 2) | file LICENCE",
"URL": "https://Matrix.R-forge.R-project.org",
"BugReports": "https://R-forge.R-project.org/tracker/?atid=294&group_id=61",
"Contact": "Matrix-authors@R-project.org",
"Authors@R": "c(person(\"Douglas\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = c(\"aut\", \"cre\"), email = \"mmaechler+Matrix@gmail.com\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Mikael\", \"Jagan\", role = \"aut\", comment = c(ORCID = \"0000-0002-3542-2938\")), person(\"Timothy A.\", \"Davis\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7614-6899\", \"SuiteSparse libraries\", \"collaborators listed in dir(system.file(\\\"doc\\\", \\\"SuiteSparse\\\", package=\\\"Matrix\\\"), pattern=\\\"License\\\", full.names=TRUE, recursive=TRUE)\")), person(\"George\", \"Karypis\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2753-1437\", \"METIS library\", \"Copyright: Regents of the University of Minnesota\")), person(\"Jason\", \"Riedy\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4345-4200\", \"GNU Octave's condest() and onenormest()\", \"Copyright: Regents of the University of California\")), person(\"Jens\", \"Oehlschlägel\", role = \"ctb\", comment = \"initial nearPD()\"), person(\"R Core Team\", role = \"ctb\", comment = c(ROR = \"02zz1nj61\", \"base R's matrix implementation\")))",
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"VersionNote": "Released 0.5-3 on 2023-11-06",
"Date": "2025-03-25",
"Title": "Modelling with Sparse and Dense Matrices",
"Contact": "Matrix-authors@R-project.org",
"Authors@R": "c( person(\"Douglas\", \"Bates\", role = \"aut\", email = \"bates@stat.wisc.edu\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = c(\"aut\", \"cre\"), email = \"mmaechler+Matrix@gmail.com\", comment = c(ORCID = \"0000-0002-8685-9910\")))",
"Description": "Generalized Linear Modelling with sparse and dense 'Matrix' matrices, using modular prediction and response module classes.",
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"License": "GPL (>= 2)",
"URL": "https://Matrix.R-forge.R-project.org/, https://r-forge.r-project.org/R/?group_id=61",
"BugReports": "https://R-forge.R-project.org/tracker/?func=add&atid=294&group_id=61",
"NeedsCompilation": "no",
"Author": "Douglas Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>)",
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"Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
"Description": "Creates classes with reference semantics, similar to R's built-in reference classes. Compared to reference classes, R6 classes are simpler and lighter-weight, and they are not built on S4 classes so they do not require the methods package. These classes allow public and private members, and they support inheritance, even when the classes are defined in different packages.",
"License": "MIT + file LICENSE",
"URL": "https://r6.r-lib.org, https://github.com/r-lib/R6",
"BugReports": "https://github.com/r-lib/R6/issues",
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"Author": "Winston Chang [aut, cre], Posit Software, PBC [cph, fnd]",
"Maintainer": "Winston Chang <winston@posit.co>",
"Repository": "CRAN"
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"Source": "Repository",
"Date": "2022-04-03",
"Title": "ColorBrewer Palettes",
"Authors@R": "c(person(given = \"Erich\", family = \"Neuwirth\", role = c(\"aut\", \"cre\"), email = \"erich.neuwirth@univie.ac.at\"))",
"Author": "Erich Neuwirth [aut, cre]",
"Maintainer": "Erich Neuwirth <erich.neuwirth@univie.ac.at>",
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],
"Description": "Provides color schemes for maps (and other graphics) designed by Cynthia Brewer as described at http://colorbrewer2.org.",
"License": "Apache License 2.0",
"NeedsCompilation": "no",
"Repository": "CRAN"
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"Version": "1.1.0",
"Source": "Repository",
"Title": "Seamless R and C++ Integration",
"Date": "2025-07-01",
"Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"JJ\", \"Allaire\", role = \"aut\", comment = c(ORCID = \"0000-0003-0174-9868\")), person(\"Kevin\", \"Ushey\", role = \"aut\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Qiang\", \"Kou\", role = \"aut\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Nathan\", \"Russell\", role = \"aut\"), person(\"Iñaki\", \"Ucar\", role = \"aut\", comment = c(ORCID = \"0000-0001-6403-5550\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"John\", \"Chambers\", role = \"aut\"))",
"Description": "The 'Rcpp' package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about 'Rcpp' is provided by several vignettes included in this package, via the 'Rcpp Gallery' site at <https://gallery.rcpp.org>, the paper by Eddelbuettel and Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013, <doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018, <doi:10.1080/00031305.2017.1375990>); see 'citation(\"Rcpp\")' for details.",
"Imports": [
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"utils"
],
"Suggests": [
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"inline",
"rbenchmark",
"pkgKitten (>= 0.1.2)"
],
"URL": "https://www.rcpp.org, https://dirk.eddelbuettel.com/code/rcpp.html, https://github.com/RcppCore/Rcpp",
"License": "GPL (>= 2)",
"BugReports": "https://github.com/RcppCore/Rcpp/issues",
"MailingList": "rcpp-devel@lists.r-forge.r-project.org",
"RoxygenNote": "6.1.1",
"Encoding": "UTF-8",
"NeedsCompilation": "yes",
"Author": "Dirk Eddelbuettel [aut, cre] (ORCID: <https://orcid.org/0000-0001-6419-907X>), Romain Francois [aut] (ORCID: <https://orcid.org/0000-0002-2444-4226>), JJ Allaire [aut] (ORCID: <https://orcid.org/0000-0003-0174-9868>), Kevin Ushey [aut] (ORCID: <https://orcid.org/0000-0003-2880-7407>), Qiang Kou [aut] (ORCID: <https://orcid.org/0000-0001-6786-5453>), Nathan Russell [aut], Iñaki Ucar [aut] (ORCID: <https://orcid.org/0000-0001-6403-5550>), Doug Bates [aut] (ORCID: <https://orcid.org/0000-0001-8316-9503>), John Chambers [aut]",
"Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
"Repository": "CRAN"
},
"RcppArmadillo": {
"Package": "RcppArmadillo",
"Version": "15.0.2-1",
"Source": "Repository",
"Type": "Package",
"Title": "'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library",
"Date": "2025-09-08",
"Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Binxiang\", \"Ni\", role = \"aut\"), person(\"Conrad\", \"Sanderson\", role = \"aut\", comment = c(ORCID = \"0000-0002-0049-4501\")))",
"Description": "'Armadillo' is a templated C++ linear algebra library aiming towards a good balance between speed and ease of use. It provides high-level syntax and functionality deliberately similar to Matlab. It is useful for algorithm development directly in C++, or quick conversion of research code into production environments. It provides efficient classes for vectors, matrices and cubes where dense and sparse matrices are supported. Integer, floating point and complex numbers are supported. A sophisticated expression evaluator (based on template meta-programming) automatically combines several operations to increase speed and efficiency. Dynamic evaluation automatically chooses optimal code paths based on detected matrix structures. Matrix decompositions are provided through integration with LAPACK, or one of its high performance drop-in replacements (such as 'MKL' or 'OpenBLAS'). It can automatically use 'OpenMP' multi-threading (parallelisation) to speed up computationally expensive operations. . The 'RcppArmadillo' package includes the header files from the 'Armadillo' library; users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. Starting from release 15.0.0, the minimum compilation standard is C++14 so 'Armadillo' version 14.6.3 is included as a fallback when an R package forces the C++11 standard. Package authors should set a '#define' to select the 'current' version, or select the 'legacy' version (also chosen as default) if they must. See 'GitHub issue #475' for details. . Since release 7.800.0, 'Armadillo' is licensed under Apache License 2; previous releases were under licensed as MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that; 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.",
"License": "GPL (>= 2)",
"LazyLoad": "yes",
"Depends": [
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],
"LinkingTo": [
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],
"Imports": [
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"stats",
"utils",
"methods"
],
"Suggests": [
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"Matrix (>= 1.3.0)",
"pkgKitten",
"reticulate",
"slam"
],
"URL": "https://github.com/RcppCore/RcppArmadillo, https://dirk.eddelbuettel.com/code/rcpp.armadillo.html",
"BugReports": "https://github.com/RcppCore/RcppArmadillo/issues",
"RoxygenNote": "6.0.1",
"NeedsCompilation": "yes",
"Author": "Dirk Eddelbuettel [aut, cre] (ORCID: <https://orcid.org/0000-0001-6419-907X>), Romain Francois [aut] (ORCID: <https://orcid.org/0000-0002-2444-4226>), Doug Bates [aut] (ORCID: <https://orcid.org/0000-0001-8316-9503>), Binxiang Ni [aut], Conrad Sanderson [aut] (ORCID: <https://orcid.org/0000-0002-0049-4501>)",
"Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
"Repository": "CRAN"
},
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"Package": "RcppEigen",
"Version": "0.3.4.0.2",
"Source": "Repository",
"Type": "Package",
"Title": "'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library",
"Date": "2024-08-23",
"Authors@R": "c(person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Yixuan\", \"Qiu\", role = \"aut\", comment = c(ORCID = \"0000-0003-0109-6692\")), person(\"Authors of\", \"Eigen\", role = \"cph\", comment = \"Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS\"))",
"Copyright": "See the file COPYRIGHTS for various Eigen copyright details",
"Description": "R and 'Eigen' integration using 'Rcpp'. 'Eigen' is a C++ template library for linear algebra: matrices, vectors, numerical solvers and related algorithms. It supports dense and sparse matrices on integer, floating point and complex numbers, decompositions of such matrices, and solutions of linear systems. Its performance on many algorithms is comparable with some of the best implementations based on 'Lapack' and level-3 'BLAS'. The 'RcppEigen' package includes the header files from the 'Eigen' C++ template library. Thus users do not need to install 'Eigen' itself in order to use 'RcppEigen'. Since version 3.1.1, 'Eigen' is licensed under the Mozilla Public License (version 2); earlier version were licensed under the GNU LGPL version 3 or later. 'RcppEigen' (the 'Rcpp' bindings/bridge to 'Eigen') is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.",
"License": "GPL (>= 2) | file LICENSE",
"LazyLoad": "yes",
"Depends": [
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],
"LinkingTo": [
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],
"Imports": [
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"stats",
"utils"
],
"Suggests": [
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"inline",
"tinytest",
"pkgKitten",
"microbenchmark"
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"URL": "https://github.com/RcppCore/RcppEigen, https://dirk.eddelbuettel.com/code/rcpp.eigen.html",
"BugReports": "https://github.com/RcppCore/RcppEigen/issues",
"NeedsCompilation": "yes",
"Author": "Doug Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), Dirk Eddelbuettel [aut, cre] (<https://orcid.org/0000-0001-6419-907X>), Romain Francois [aut] (<https://orcid.org/0000-0002-2444-4226>), Yixuan Qiu [aut] (<https://orcid.org/0000-0003-0109-6692>), Authors of Eigen [cph] (Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS)",
"Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
"Repository": "CRAN"
},
"Rdpack": {
"Package": "Rdpack",
"Version": "2.6.4",
"Source": "Repository",
"Type": "Package",
"Title": "Update and Manipulate Rd Documentation Objects",
"Authors@R": "c( person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\", role = c(\"aut\", \"cre\"), email = \"georgi.boshnakov@manchester.ac.uk\", comment = c(ORCID = \"0000-0003-2839-346X\")), person(given = \"Duncan\", family = \"Murdoch\", role = \"ctb\", email = \"murdoch.duncan@gmail.com\") )",
"Description": "Functions for manipulation of R documentation objects, including functions reprompt() and ereprompt() for updating 'Rd' documentation for functions, methods and classes; 'Rd' macros for citations and import of references from 'bibtex' files for use in 'Rd' files and 'roxygen2' comments; 'Rd' macros for evaluating and inserting snippets of 'R' code and the results of its evaluation or creating graphics on the fly; and many functions for manipulation of references and Rd files.",
"URL": "https://geobosh.github.io/Rdpack/ (doc), https://github.com/GeoBosh/Rdpack (devel)",
"BugReports": "https://github.com/GeoBosh/Rdpack/issues",
"Depends": [
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"methods"
],
"Imports": [
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"Suggests": [
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"rprojroot",
"gbRd"
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"License": "GPL (>= 2)",
"LazyLoad": "yes",
"RoxygenNote": "7.1.1",
"NeedsCompilation": "no",
"Author": "Georgi N. Boshnakov [aut, cre] (<https://orcid.org/0000-0003-2839-346X>), Duncan Murdoch [ctb]",
"Maintainer": "Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>",
"Repository": "CRAN"
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"Package": "Rgraphviz",
"Version": "2.52.0",
"Source": "Bioconductor",
"Title": "Provides plotting capabilities for R graph objects",
"Description": "Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package.",
"Authors@R": "c(person(c(\"Kasper\", \"Daniel\"), \"Hansen\", role = c(\"cre\", \"aut\"), email = \"kasperdanielhansen@gmail.com\"), person(\"Jeff\", \"Gentry\", role = \"aut\"), person(\"Li\", \"Long\", role = \"aut\"), person(\"Robert\", \"Gentleman\", role = \"aut\"), person(\"Seth\", \"Falcon\", role = \"aut\"), person(\"Florian\", \"Hahne\", role = \"aut\"), person(\"Deepayan\", \"Sarkar\", role = \"aut\"))",
"Depends": [
"R (>= 2.6.0)",
"methods",
"utils",
"graph",
"grid"
],
"Imports": [
"stats4",
"graphics",
"grDevices"
],
"Suggests": [
"RUnit",
"BiocGenerics",
"XML"
],
"SystemRequirements": "optionally Graphviz (>= 2.16), USE_C17",
"GraphvizDetails": "Graphviz 2.28.0",
"License": "EPL",
"LazyLoad": "Yes",
"Collate": "AllGenerics.R AllClasses.R SimpleMethods.R graphvizVersion.R graphviz_build_version.R agfunctions.R attrs.R graphLayout.R plotGraph.R plotUtils.R layoutGraph.R renderGraph.R graph_methods.R writers.R zzz.R",
"biocViews": "GraphAndNetwork, Visualization",
"git_url": "https://git.bioconductor.org/packages/Rgraphviz",
"git_branch": "RELEASE_3_21",
"git_last_commit": "56c2404",
"git_last_commit_date": "2025-04-15",
"Repository": "Bioconductor 3.21",
"NeedsCompilation": "yes",
"Author": "Kasper Daniel Hansen [cre, aut], Jeff Gentry [aut], Li Long [aut], Robert Gentleman [aut], Seth Falcon [aut], Florian Hahne [aut], Deepayan Sarkar [aut]",
"Maintainer": "Kasper Daniel Hansen <kasperdanielhansen@gmail.com>"
},
"RhpcBLASctl": {
"Package": "RhpcBLASctl",
"Version": "0.23-42",
"Source": "Repository",
"Date": "2023-02-11",
"Title": "Control the Number of Threads on 'BLAS'",
"Author": "Junji NAKANO <nakanoj@ism.ac.jp> and Ei-ji Nakama <nakama@ki.rim.or.jp>",
"Maintainer": "Ei-ji Nakama <nakama@ki.rim.or.jp>",
"Description": "Control the number of threads on 'BLAS' (Aka 'GotoBLAS', 'OpenBLAS', 'ACML', 'BLIS' and 'MKL'). And possible to control the number of threads in 'OpenMP'. Get a number of logical cores and physical cores if feasible.",
"License": "AGPL-3",
"URL": "https://prs.ism.ac.jp/~nakama/Rhpc/",
"ByteCompile": "true",
"NeedsCompilation": "yes",
"Repository": "CRAN"
},
"TMB": {
"Package": "TMB",
"Version": "1.9.17",
"Source": "Repository",
"Type": "Package",
"Title": "Template Model Builder: A General Random Effect Tool Inspired by 'ADMB'",
"Date": "2025-03-08",
"Authors@R": "c(person(\"Kasper\",\"Kristensen\",role=c(\"aut\",\"cre\",\"cph\"),email=\"kaskr@dtu.dk\"), person(\"Brad\",\"Bell\",role=\"cph\"), person(\"Hans\",\"Skaug\",role=\"ctb\"), person(\"Arni\",\"Magnusson\",role=\"ctb\"), person(\"Casper\",\"Berg\",role=\"ctb\"), person(\"Anders\",\"Nielsen\",role=\"ctb\"), person(\"Martin\",\"Maechler\",role=\"ctb\"), person(\"Theo\",\"Michelot\",role=\"ctb\"), person(\"Mollie\",\"Brooks\",role=\"ctb\"), person(\"Alex\",\"Forrence\",role=\"ctb\"), person(\"Christoffer\",\"Moesgaard Albertsen\",role=\"ctb\"), person(\"Cole\",\"Monnahan\",role=\"ctb\") )",
"Maintainer": "Kasper Kristensen <kaskr@dtu.dk>",
"Author": "Kasper Kristensen [aut, cre, cph], Brad Bell [cph], Hans Skaug [ctb], Arni Magnusson [ctb], Casper Berg [ctb], Anders Nielsen [ctb], Martin Maechler [ctb], Theo Michelot [ctb], Mollie Brooks [ctb], Alex Forrence [ctb], Christoffer Moesgaard Albertsen [ctb], Cole Monnahan [ctb]",
"Copyright": "See the file COPYRIGHTS",
"Description": "With this tool, a user should be able to quickly implement complex random effect models through simple C++ templates. The package combines 'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain an efficient implementation of the applied Laplace approximation with exact derivatives. Key features are: Automatic sparseness detection, parallelism through 'BLAS' and parallel user templates.",
"License": "GPL-2",
"URL": "https://github.com/kaskr/adcomp/wiki",
"BugReports": "https://github.com/kaskr/adcomp/issues",
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],
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"methods",
"stats",
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],
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],
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"Version": "0.6-3.4",
"Source": "Repository",
"Date": "2022-04-25",
"Title": "Interpolation of Irregularly and Regularly Spaced Data",
"Authors@R": "c(person(\"Hiroshi\", \"Akima\", role = c(\"aut\", \"cph\"), comment = \"Fortran code (TOMS 760, 761, 697 and 433)\"), person(\"Albrecht\", \"Gebhardt\", role = c(\"aut\", \"cre\", \"cph\"), email = \"albrecht.gebhardt@aau.at\", comment = \"R port (interp*, bicubic* functions), bilinear code\"), person(\"Thomas\", \"Petzold\", role = c(\"ctb\", \"cph\"), comment = \"aspline function\"), person(\"Martin\", \"Maechler\", email=\"maechler@stat.math.ethz.ch\", role = c(\"ctb\", \"cph\"), comment = \"interp2xyz function + enhancements\"), person(\"YYYY Association for Computing Machinery, Inc.\", role = c(\"cph\"), comment = \"covers code from TOMS 760, 761, 697 and 433\") )",
"Maintainer": "Albrecht Gebhardt <albrecht.gebhardt@aau.at>",
"Description": "Several cubic spline interpolation methods of H. Akima for irregular and regular gridded data are available through this package, both for the bivariate case (irregular data: ACM 761, regular data: ACM 760) and univariate case (ACM 433 and ACM 697). Linear interpolation of irregular gridded data is also covered by reusing D. J. Renkas triangulation code which is part of Akimas Fortran code. A bilinear interpolator for regular grids was also added for comparison with the bicubic interpolator on regular grids.",
"License": "ACM | file LICENSE",
"Depends": [
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],
"Imports": [
"sp"
],
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],
"NeedsCompilation": "yes",
"Author": "Hiroshi Akima [aut, cph] (Fortran code (TOMS 760, 761, 697 and 433)), Albrecht Gebhardt [aut, cre, cph] (R port (interp*, bicubic* functions), bilinear code), Thomas Petzold [ctb, cph] (aspline function), Martin Maechler [ctb, cph] (interp2xyz function + enhancements), YYYY Association for Computing Machinery, Inc. [cph] (covers code from TOMS 760, 761, 697 and 433)",
"License_restricts_use": "yes",
"Repository": "CRAN"
},
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"Version": "1.2.1",
"Source": "Repository",
"Type": "Package",
"Title": "Password Entry Utilities for R, Git, and SSH",
"Authors@R": "person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\"))",
"Description": "Cross-platform utilities for prompting the user for credentials or a passphrase, for example to authenticate with a server or read a protected key. Includes native programs for MacOS and Windows, hence no 'tcltk' is required. Password entry can be invoked in two different ways: directly from R via the askpass() function, or indirectly as password-entry back-end for 'ssh-agent' or 'git-credential' via the SSH_ASKPASS and GIT_ASKPASS environment variables. Thereby the user can be prompted for credentials or a passphrase if needed when R calls out to git or ssh.",
"License": "MIT + file LICENSE",
"URL": "https://r-lib.r-universe.dev/askpass",
"BugReports": "https://github.com/r-lib/askpass/issues",
"Encoding": "UTF-8",
"Imports": [
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],
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"Suggests": [
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"Language": "en-US",
"NeedsCompilation": "yes",
"Author": "Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)",
"Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
"Repository": "CRAN"
},
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"Package": "base64enc",
"Version": "0.1-3",
"Source": "Repository",
"Title": "Tools for base64 encoding",
"Author": "Simon Urbanek <Simon.Urbanek@r-project.org>",
"Maintainer": "Simon Urbanek <Simon.Urbanek@r-project.org>",
"Depends": [
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],
"Enhances": [
"png"
],
"Description": "This package provides tools for handling base64 encoding. It is more flexible than the orphaned base64 package.",
"License": "GPL-2 | GPL-3",
"URL": "http://www.rforge.net/base64enc",
"NeedsCompilation": "yes",
"Repository": "CRAN"
},
"bnlearn": {
"Package": "bnlearn",
"Version": "5.0.2",
"Source": "Repository",
"Type": "Package",
"Title": "Bayesian Network Structure Learning, Parameter Learning and Inference",
"Date": "2025-01-05",
"Depends": [
"R (>= 4.4.0)",
"methods"
],
"Suggests": [
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"graph",
"Rgraphviz",
"igraph",
"lattice",
"gRbase",
"gRain (>= 1.3-3)",
"Rmpfr",
"gmp"
],
"Authors@R": "c(person(given = \"Marco\", family = \"Scutari\", role = c(\"aut\", \"cre\"), email = \"scutari@bnlearn.com\"), person(given = \"Tomi\", family = \"Silander\", role = \"ctb\"))",
"Maintainer": "Marco Scutari <scutari@bnlearn.com>",
"Description": "Bayesian network structure learning, parameter learning and inference. This package implements constraint-based (PC, GS, IAMB, Inter-IAMB, Fast-IAMB, MMPC, Hiton-PC, HPC), pairwise (ARACNE and Chow-Liu), score-based (Hill-Climbing and Tabu Search) and hybrid (MMHC, RSMAX2, H2PC) structure learning algorithms for discrete, Gaussian and conditional Gaussian networks, along with many score functions and conditional independence tests. The Naive Bayes and the Tree-Augmented Naive Bayes (TAN) classifiers are also implemented. Some utility functions (model comparison and manipulation, random data generation, arc orientation testing, simple and advanced plots) are included, as well as support for parameter estimation (maximum likelihood and Bayesian) and inference, conditional probability queries, cross-validation, bootstrap and model averaging. Development snapshots with the latest bugfixes are available from <https://www.bnlearn.com/>.",
"URL": "https://www.bnlearn.com/",
"SystemRequirements": "USE_C17",
"License": "GPL (>= 2)",
"LazyData": "yes",
"NeedsCompilation": "yes",
"Author": "Marco Scutari [aut, cre], Tomi Silander [ctb]",
"Repository": "CRAN"
},
"boot": {
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"Version": "1.3-32",
"Source": "Repository",
"Priority": "recommended",
"Date": "2025-08-29",
"Authors@R": "c(person(\"Angelo\", \"Canty\", role = \"aut\", email = \"cantya@mcmaster.ca\", comment = \"author of original code for S\"), person(\"Brian\", \"Ripley\", role = c(\"aut\", \"trl\"), email = \"Brian.Ripley@R-project.org\", comment = \"conversion to R, maintainer 1999--2022, author of parallel support\"), person(\"Alessandra R.\", \"Brazzale\", role = c(\"ctb\", \"cre\"), email = \"brazzale@stat.unipd.it\", comment = \"minor bug fixes\"))",
"Maintainer": "Alessandra R. Brazzale <brazzale@stat.unipd.it>",
"Note": "Maintainers are not available to give advice on using a package they did not author.",
"Description": "Functions and datasets for bootstrapping from the book \"Bootstrap Methods and Their Application\" by A. C. Davison and D. V. Hinkley (1997, CUP), originally written by Angelo Canty for S.",
"Title": "Bootstrap Functions",
"Depends": [
"R (>= 3.0.0)",
"graphics",
"stats"
],
"Suggests": [
"MASS",
"survival"
],
"LazyData": "yes",
"ByteCompile": "yes",
"License": "Unlimited",
"NeedsCompilation": "no",
"Author": "Angelo Canty [aut] (author of original code for S), Brian Ripley [aut, trl] (conversion to R, maintainer 1999--2022, author of parallel support), Alessandra R. Brazzale [ctb, cre] (minor bug fixes)",
"Repository": "CRAN"
},
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"Package": "brglm",
"Version": "0.7.2",
"Source": "Repository",
"Type": "Package",
"Title": "Bias Reduction in Binomial-Response Generalized Linear Models",
"Authors@R": "person(given = \"Ioannis\", family = \"Kosmidis\", role = c(\"aut\", \"cre\"), email = \"ioannis.kosmidis@warwick.ac.uk\", comment = c(ORCID = \"0000-0003-1556-0302\"))",
"URL": "https://github.com/ikosmidis/brglm",
"BugReports": "https://github.com/ikosmidis/brglm/issues",
"Description": "Fit generalized linear models with binomial responses using either an adjusted-score approach to bias reduction or maximum penalized likelihood where penalization is by Jeffreys invariant prior. These procedures return estimates with improved frequentist properties (bias, mean squared error) that are always finite even in cases where the maximum likelihood estimates are infinite (data separation). Fitting takes place by fitting generalized linear models on iteratively updated pseudo-data. The interface is essentially the same as 'glm'. More flexibility is provided by the fact that custom pseudo-data representations can be specified and used for model fitting. Functions are provided for the construction of confidence intervals for the reduced-bias estimates.",
"License": "GPL (>= 2)",
"Depends": [
"R (>= 2.6.0)",
"profileModel"
],
"Suggests": [
"MASS"
],
"NeedsCompilation": "yes",
"Author": "Ioannis Kosmidis [aut, cre] (<https://orcid.org/0000-0003-1556-0302>)",
"Maintainer": "Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>",
"Repository": "CRAN"
},
"brio": {
"Package": "brio",
"Version": "1.1.5",
"Source": "Repository",
"Title": "Basic R Input Output",
"Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
"Description": "Functions to handle basic input output, these functions always read and write UTF-8 (8-bit Unicode Transformation Format) files and provide more explicit control over line endings.",
"License": "MIT + file LICENSE",
"URL": "https://brio.r-lib.org, https://github.com/r-lib/brio",
"BugReports": "https://github.com/r-lib/brio/issues",
"Depends": [
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],
"Suggests": [
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],
"Config/Needs/website": "tidyverse/tidytemplate",
"Config/testthat/edition": "3",
"Encoding": "UTF-8",
"RoxygenNote": "7.2.3",
"NeedsCompilation": "yes",
"Author": "Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>), Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd]",
"Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
"Repository": "CRAN"
},
"bslib": {
"Package": "bslib",
"Version": "0.9.0",
"Source": "Repository",
"Title": "Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'",
"Authors@R": "c( person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Garrick\", \"Aden-Buie\", , \"garrick@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-7111-0077\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(, \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Javi\", \"Aguilar\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap colorpicker library\"), person(\"Thomas\", \"Park\", role = c(\"ctb\", \"cph\"), comment = \"Bootswatch library\"), person(, \"PayPal\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap accessibility plugin\") )",
"Description": "Simplifies custom 'CSS' styling of both 'shiny' and 'rmarkdown' via 'Bootstrap' 'Sass'. Supports 'Bootstrap' 3, 4 and 5 as well as their various 'Bootswatch' themes. An interactive widget is also provided for previewing themes in real time.",
"License": "MIT + file LICENSE",
"URL": "https://rstudio.github.io/bslib/, https://github.com/rstudio/bslib",
"BugReports": "https://github.com/rstudio/bslib/issues",
"Depends": [
"R (>= 2.10)"
],
"Imports": [
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"cachem",
"fastmap (>= 1.1.1)",
"grDevices",
"htmltools (>= 0.5.8)",
"jquerylib (>= 0.1.3)",
"jsonlite",
"lifecycle",
"memoise (>= 2.0.1)",
"mime",
"rlang",
"sass (>= 0.4.9)"
],
"Suggests": [
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"curl",
"fontawesome",
"future",
"ggplot2",
"knitr",
"magrittr",
"rappdirs",
"rmarkdown (>= 2.7)",
"shiny (> 1.8.1)",
"testthat",
"thematic",
"tools",
"utils",
"withr",
"yaml"
],
"Config/Needs/deploy": "BH, chiflights22, colourpicker, commonmark, cpp11, cpsievert/chiflights22, cpsievert/histoslider, dplyr, DT, ggplot2, ggridges, gt, hexbin, histoslider, htmlwidgets, lattice, leaflet, lubridate, markdown, modelr, plotly, reactable, reshape2, rprojroot, rsconnect, rstudio/shiny, scales, styler, tibble",
"Config/Needs/routine": "chromote, desc, renv",
"Config/Needs/website": "brio, crosstalk, dplyr, DT, ggplot2, glue, htmlwidgets, leaflet, lorem, palmerpenguins, plotly, purrr, rprojroot, rstudio/htmltools, scales, stringr, tidyr, webshot2",
"Config/testthat/edition": "3",
"Config/testthat/parallel": "true",
"Config/testthat/start-first": "zzzz-bs-sass, fonts, zzz-precompile, theme-*, rmd-*",
"Encoding": "UTF-8",
"RoxygenNote": "7.3.2",
"Collate": "'accordion.R' 'breakpoints.R' 'bs-current-theme.R' 'bs-dependencies.R' 'bs-global.R' 'bs-remove.R' 'bs-theme-layers.R' 'bs-theme-preset-bootswatch.R' 'bs-theme-preset-brand.R' 'bs-theme-preset-builtin.R' 'bs-theme-preset.R' 'utils.R' 'bs-theme-preview.R' 'bs-theme-update.R' 'bs-theme.R' 'bslib-package.R' 'buttons.R' 'card.R' 'deprecated.R' 'files.R' 'fill.R' 'imports.R' 'input-dark-mode.R' 'input-switch.R' 'layout.R' 'nav-items.R' 'nav-update.R' 'navbar_options.R' 'navs-legacy.R' 'navs.R' 'onLoad.R' 'page.R' 'popover.R' 'precompiled.R' 'print.R' 'shiny-devmode.R' 'sidebar.R' 'staticimports.R' 'tooltip.R' 'utils-deps.R' 'utils-shiny.R' 'utils-tags.R' 'value-box.R' 'version-default.R' 'versions.R'",
"NeedsCompilation": "no",
"Author": "Carson Sievert [aut, cre] (<https://orcid.org/0000-0002-4958-2844>), Joe Cheng [aut], Garrick Aden-Buie [aut] (<https://orcid.org/0000-0002-7111-0077>), Posit Software, PBC [cph, fnd], Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Javi Aguilar [ctb, cph] (Bootstrap colorpicker library), Thomas Park [ctb, cph] (Bootswatch library), PayPal [ctb, cph] (Bootstrap accessibility plugin)",
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"Repository": "CRAN"
},
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"Version": "1.1.0",
"Source": "Repository",
"Title": "Cache R Objects with Automatic Pruning",
"Description": "Key-value stores with automatic pruning. Caches can limit either their total size or the age of the oldest object (or both), automatically pruning objects to maintain the constraints.",
"Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", c(\"aut\", \"cre\")), person(family = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")))",
"License": "MIT + file LICENSE",
"Encoding": "UTF-8",
"ByteCompile": "true",
"URL": "https://cachem.r-lib.org/, https://github.com/r-lib/cachem",
"Imports": [
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"Config/Needs/routine": "lobstr",
"Config/Needs/website": "pkgdown",
"NeedsCompilation": "yes",
"Author": "Winston Chang [aut, cre], Posit Software, PBC [cph, fnd]",
"Maintainer": "Winston Chang <winston@posit.co>",
"Repository": "CRAN"
},
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"Version": "3.7.6",
"Source": "Repository",
"Title": "Call R from R",
"Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\")) )",
"Description": "It is sometimes useful to perform a computation in a separate R process, without affecting the current R process at all. This packages does exactly that.",
"License": "MIT + file LICENSE",
"URL": "https://callr.r-lib.org, https://github.com/r-lib/callr",
"BugReports": "https://github.com/r-lib/callr/issues",
"Depends": [
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],
"Imports": [
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"R6",
"utils"
],
"Suggests": [
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"mockery",
"ps",
"rprojroot",
"spelling",
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"Config/Needs/website": "r-lib/asciicast, glue, htmlwidgets, igraph, tibble, tidyverse/tidytemplate",
"Config/testthat/edition": "3",
"Encoding": "UTF-8",
"Language": "en-US",
"RoxygenNote": "7.3.1.9000",
"NeedsCompilation": "no",
"Author": "Gábor Csárdi [aut, cre, cph] (<https://orcid.org/0000-0001-7098-9676>), Winston Chang [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph, fnd]",
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"Repository": "CRAN"
},
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"Version": "7.3-23",
"Source": "Repository",
"Priority": "recommended",
"Date": "2025-01-01",
"Depends": [
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"Imports": [
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