ECOFFitter/pyproject.toml at main · fowler-lab/ECOFFitter · GitHub

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[build-system]
requires = ["setuptools>=61.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "ecoff-fitter"
version = "0.1.0"
description = "A Python tool to fit an interval regression model to censored Minimum Inhibitory Concentration values"
readme = "README.md"
authors = [
    { name = "Dylan Adlard", email = "dylan.adlard@ndm.ox.ac.uk" },
    { name = "Philip W Fowler" }
]
license = { text = "MIT" }
requires-python = ">=3.9"
keywords = ["ECOFF", "antimicrobial resistance", "minimum inhibitory concentration", "MIC"]
classifiers = [
    "Programming Language :: Python :: 3"
]
dependencies = [
    "numpy",
    "scipy",
    "pandas",
    "scikit-learn",
    "joblib",
    "matplotlib",
    "PyYAML",
    "intreg",
    "openpyxl"
]

[project.urls]
Homepage = "https://github.com/fowler-lab/ECOFFitter"

[project.scripts]
ecoff-fitter = "ecoff_fitter.cli:main"

[tool.setuptools]
package-dir = {"" = "src"}

[tool.setuptools.packages.find]
where = ["src"]

[tool.pytest.ini_options]
pythonpath = ["src"]
testpaths = ["tests"]

[tool.coverage.run]
omit = [
    "*/ecoff_fitter/wts.py",
    "*/gui.py"
]

[tool.mypy]
python_version = "3.10"
warn_return_any = true
warn_unused_ignores = true
warn_redundant_casts = true
warn_unused_configs = true
disallow_untyped_defs = true
disallow_incomplete_defs = true
ignore_missing_imports = true
allow_redefinition = true
no_implicit_optional = true
implicit_reexport = true
exclude = "src/ecoff_fitter/wts.py"

[project.optional-dependencies]
dev = ["mypy", "pandas-stubs", "types-PyYAML",  "scipy-stubs"]