Doesn't run on CentOS 7?

[durina]

Hey!
This software runs on my laptop (Ubuntu 20.04), and fails to start up when I try to run it on our workstation (CentOS 7). Tried it on two independent workstations.
This is the error I get when I run mvn clean package:

Plenty download success...

[WARNING] Using experimental Kotlin incremental compilation
[INFO] Non-incremental compilation will be performed: NO_BUILD_HISTORY
[INFO] Kotlin compile iteration: /path/to/RNArtist/src/main/kotlin/RNArtist.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/Mediator.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/Canvas2D.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/Editor.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnar
tist/gui/EmbeddedDBGUI.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/Explorer.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/JunctionKnob.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/JunctionKnobFX.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/ProjectsPanel.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/SelectionShape.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/Settings.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/SplashWindow.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/WebBrowser.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/editor/Button.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/editor/ColorPicker.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/editor/HBox.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/editor/ScriptEditor.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/editor/TextField.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/editor/TypeChooser.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/io/ChimeraDriver.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/io/ChimeraXDriver.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/io/EmbeddedDB.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/io/Utils.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/DrawingLoaded.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/ExplorerItem.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/BpseqKw.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/BracketNotationKw.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/ClosedCurly.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/ColorField.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/ColorKw.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/CtKw.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/DSLElement.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/DSLKeyword.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/DSLParameter.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/DataKw.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/FileField.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/FloatField.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/HideKw.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/IntegerField.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/JunctionKw.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/LayoutKw.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/LineKw.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/LocationKw.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/NewLine.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/OpenedCurly.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/Operator.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/OptionalDSLKeyword.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/OptionalDSLParameter.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/ParameterField.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/RNArtistKw.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/RfamKw.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/ScriptTab.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/SecondaryStructureKw.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/SequenceBnParameter.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/ShowKw.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/StockholmKw.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/StringValueWithQuotes.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/StringWithQuotes.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/StringWithoutQuotes.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/ThemeKw.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/TypeField.kt, /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/model/editor/ViennaKw.kt
[INFO] Exit code: COMPILATION_ERROR
[ERROR] /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/Editor.kt: (17, 8) Unresolved reference: netscape
[ERROR] /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/Editor.kt: (118, 20) Unresolved reference: JSObject
[ERROR] /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/editor/ScriptEditor.kt: (100, 45) Function invocation 'isEmpty(...)' expected
[ERROR] /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/editor/ScriptEditor.kt: (100, 45) Unresolved reference. None of the following candidates is applicable because of receiver type mismatch:
public inline fun <T> Array<out TypeVariable(T)>.isEmpty(): Boolean defined in kotlin.collections
public inline fun BooleanArray.isEmpty(): Boolean defined in kotlin.collections
public inline fun ByteArray.isEmpty(): Boolean defined in kotlin.collections
public inline fun CharArray.isEmpty(): Boolean defined in kotlin.collections
public inline fun CharSequence.isEmpty(): Boolean defined in kotlin.text
public inline fun DoubleArray.isEmpty(): Boolean defined in kotlin.collections
public inline fun FloatArray.isEmpty(): Boolean defined in kotlin.collections
public inline fun IntArray.isEmpty(): Boolean defined in kotlin.collections
public inline fun LongArray.isEmpty(): Boolean defined in kotlin.collections
public inline fun ShortArray.isEmpty(): Boolean defined in kotlin.collections
[INFO] Compiled 62 Kotlin files using incremental compiler
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 6:31.775s   
[INFO] Finished at: Thu Dec 23 16:00:40 IST 2021
[INFO] Final Memory: 182M/516M 
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.jetbrains.kotlin:kotlin-maven-plugin:1.6.0:compile (compile) on project rnartist: Compilation failure: Compilation failure:
[ERROR] /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/Editor.kt:[17,8] Unresolved reference: netscape
[ERROR] /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/Editor.kt:[118,20] Unresolved reference: JSObject
[ERROR] /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/editor/ScriptEditor.kt:[100,45] Function invocation 'isEmpty(...)' expected
[ERROR] /path/to/RNArtist/src/main/kotlin/io/github/fjossinet/rnartist/gui/editor/ScriptEditor.kt:[100,45] Unresolved reference. None of the following candidates is applicable because of receiver type mismatch:
[ERROR] public inline fun <T> Array<out TypeVariable(T)>.isEmpty(): Boolean defined in kotlin.collections
[ERROR] public inline fun BooleanArray.isEmpty(): Boolean defined in kotlin.collections
[ERROR] public inline fun ByteArray.isEmpty(): Boolean defined in kotlin.collections
[ERROR] public inline fun CharArray.isEmpty(): Boolean defined in kotlin.collections
[ERROR] public inline fun CharSequence.isEmpty(): Boolean defined in kotlin.text
[ERROR] public inline fun DoubleArray.isEmpty(): Boolean defined in kotlin.collections
[ERROR] public inline fun FloatArray.isEmpty(): Boolean defined in kotlin.collections
[ERROR] public inline fun IntArray.isEmpty(): Boolean defined in kotlin.collections
[ERROR] public inline fun LongArray.isEmpty(): Boolean defined in kotlin.collections
[ERROR] public inline fun ShortArray.isEmpty(): Boolean defined in kotlin.collections
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException

And when I anyway proceed to run mvn exec:exec, it spits out an error quoted below:

Unrecognized option: --module-path
Error: Could not create the Java Virtual Machine.
Error: A fatal exception has occurred. Program will exit.
[ERROR] Command execution failed.
org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1)
	at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404)
	at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166)
	at org.codehaus.mojo.exec.ExecMojo.executeCommandLine(ExecMojo.java:982)
	at org.codehaus.mojo.exec.ExecMojo.executeCommandLine(ExecMojo.java:929)
	at org.codehaus.mojo.exec.ExecMojo.execute(ExecMojo.java:457)
	at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
	at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84)
	at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59)
	at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183)
	at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161)
	at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:320)
	at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156)
	at org.apache.maven.cli.MavenCli.execute(MavenCli.java:537)
	at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:196)
	at org.apache.maven.cli.MavenCli.main(MavenCli.java:141)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:290)
	at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:230)
	at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:414)
	at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:357)
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 12.549s
[INFO] Finished at: Thu Dec 23 16:02:01 IST 2021
[INFO] Final Memory: 14M/293M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.codehaus.mojo:exec-maven-plugin:3.0.0:exec (default-cli) on project rnartist: Command execution failed. Process exited with an error: 1 (Exit value: 1) -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException

More information
lsb_release -a

LSB Version:	:core-4.1-amd64:core-4.1-noarch
Distributor ID:	CentOS
Description:	CentOS Linux release 7.9.2009 (Core)
Release:	7.9.2009
Codename:	Core

uname -r

3.10.0-1160.45.1.el7.x86_64

java -version

openjdk version "1.8.0_312"
OpenJDK Runtime Environment (build 1.8.0_312-b07)
OpenJDK 64-Bit Server VM (build 25.312-b07, mixed mode)

[fjossinet]

Hi.

Concerning the issue with the message "Unrecognized option: --module-path", the module feature does exist since Java 9. So i think that your jdk 1.8 is too old. Which java version are you using with your Ubuntu? I suggest to use at least jdk 11.

Let me know

Best

[durina]

Concerning the issue with the message "Unrecognized option: --module-path", the module feature does exist since Java 9. So i think that your jdk 1.8 is too old.

Hey, I looked into this issue, installed JRE11 package (java-11-openjdk-devel) and even that this version as the default java (sudo alternatives --config java) when I re-tried installation, and I get a similar error.

Which java version are you using with your Ubuntu?

The java in my Ubuntu system is openjdk version "11.0.13".

Thanks for taking your time to look at it!

Cheers!

[fjossinet]

Hi. Did you find the problem with CentOS?

[fjossinet]

Hi. Did you install the last version from this page: https://www.jdeploy.com/~rnartist

Could you give it a try because many things have been modified and fixed. Thanks