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INSTALL.md

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Installation

  1. Clone repo and initialize submodules
    git clone --recurse-submodules https://github.com/ecker-lab/SAM2-Animal-Tracking
  2. Setup Environment (e.g. using conda, python>=3.10) conda create --name sam2animal python=3.12
    conda activate sam2animal
  3. Install Pytorch (torch>=2.5.1, torchvision>=0.20.1) pip install torch==2.6.0 torchvision==0.21.0 torchaudio==2.6.0 --index-url https://download.pytorch.org/whl/cu126
  4. Install the repo
    pip install -e .
  5. Download SAM 2 checkpoints (instructions taken from sam2 repo)
./download_ckpts.sh && \
cd ../..
  1. (Optional) Setup separate MMDetection environment
    This is only recommended if there is a specific reason to use a MMDetection detector.
    conda create --name mm_detect python=3.12
    conda activate mm_detect
    Then follow the MMDetection installation instruction.