diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 81537c29..9056dcbd 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -16,7 +16,7 @@ jobs: if: github.event.pull_request.draft == false strategy: matrix: - python-version: ["3.10", "3.11"] + python-version: ["3.10", "3.11", "3.12", "3.13"] runs-on: ubuntu-latest steps: - name: Check out the repository diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index 26bf158a..7e94aa22 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -19,7 +19,7 @@ jobs: - name: Set up Python uses: actions/setup-python@v5 with: - python-version: "3.11" + python-version: "3.12" - name: Bump version run: | VERSION=$(git describe --tags --abbrev=0) diff --git a/cookbook/notereader_clinical_coding_fhir.py b/cookbook/notereader_clinical_coding_fhir.py index 24f1f343..dd677e25 100644 --- a/cookbook/notereader_clinical_coding_fhir.py +++ b/cookbook/notereader_clinical_coding_fhir.py @@ -132,7 +132,7 @@ def run_server(): # Create sandbox client for testing client = SandboxClient( - url="http://localhost:8000/notereader/fhir/", + url="http://localhost:8000/notereader/?wsdl", workflow="sign-note-inpatient", protocol="soap", ) diff --git a/healthchain/fhir/readers.py b/healthchain/fhir/readers.py index d55fe7be..00c2ad4f 100644 --- a/healthchain/fhir/readers.py +++ b/healthchain/fhir/readers.py @@ -6,6 +6,7 @@ import logging import importlib +import re from typing import Optional, Dict, Any, List from fhir.resources.resource import Resource @@ -14,6 +15,42 @@ logger = logging.getLogger(__name__) +def _fix_timezone_naive_datetimes(data: Any) -> Any: + """ + Recursively fix timezone-naive datetime strings by appending UTC timezone. + + Pydantic v2 requires timezone-aware datetimes. This function walks through + nested dicts/lists and adds 'Z' (UTC) to datetime strings that match the + pattern YYYY-MM-DDTHH:MM:SS but lack timezone info. + + Args: + data: Dict, list, or primitive value to process + + Returns: + Processed data with timezone-aware datetime strings + + Example: + >>> data = {"start": "2021-04-19T00:00:00", "name": "Test"} + >>> _fix_timezone_naive_datetimes(data) + {"start": "2021-04-19T00:00:00Z", "name": "Test"} + """ + # Pattern: YYYY-MM-DDTHH:MM:SS optionally followed by microseconds + # Must NOT already have timezone (Z or +/-HH:MM) + datetime_pattern = re.compile(r"^\d{4}-\d{2}-\d{2}T\d{2}:\d{2}:\d{2}(?:\.\d+)?$") + + if isinstance(data, dict): + return { + key: _fix_timezone_naive_datetimes(value) for key, value in data.items() + } + elif isinstance(data, list): + return [_fix_timezone_naive_datetimes(item) for item in data] + elif isinstance(data, str) and datetime_pattern.match(data): + # Add UTC timezone + return f"{data}Z" + else: + return data + + def create_resource_from_dict( resource_dict: Dict, resource_type: str ) -> Optional[Resource]: @@ -99,8 +136,10 @@ def convert_prefetch_to_fhir_objects( resource_type = resource_data.get("resourceType") if resource_type: try: + # Fix timezone-naive datetimes before validation + fixed_data = _fix_timezone_naive_datetimes(resource_data) resource_class = get_fhir_model_class(resource_type) - result[key] = resource_class(**resource_data) + result[key] = resource_class(**fixed_data) except Exception as e: logger.warning( f"Failed to convert {resource_type} to FHIR object: {e}" diff --git a/healthchain/gateway/api/app.py b/healthchain/gateway/api/app.py index 0c67430b..1ed8ab86 100644 --- a/healthchain/gateway/api/app.py +++ b/healthchain/gateway/api/app.py @@ -11,7 +11,6 @@ from datetime import datetime from fastapi import FastAPI, APIRouter, HTTPException, Request from fastapi.middleware.cors import CORSMiddleware -from fastapi.middleware.wsgi import WSGIMiddleware from fastapi.exceptions import RequestValidationError from fastapi.responses import JSONResponse from termcolor import colored @@ -233,10 +232,10 @@ def _add_component_routes( # Case 2: WSGI services (like NoteReaderService) - only for services if ( component_type == "service" - and hasattr(component, "create_wsgi_app") - and callable(component.create_wsgi_app) + and hasattr(component, "create_fastapi_router") + and callable(component.create_fastapi_router) ): - self._register_wsgi_service( + self._register_mounted_service( component, component_name, endpoints_registry, path ) return @@ -249,7 +248,7 @@ def _add_component_routes( else: logger.warning( f"Service {component_name} does not implement APIRouter or WSGI patterns. " - f"Services must either inherit from APIRouter or implement create_wsgi_app()." + f"Services must either inherit from APIRouter or implement create_fastapi_router()." ) def _register_api_router( @@ -277,18 +276,16 @@ def _register_api_router( else: logger.debug(f"Registered {component_name} as router (routes unknown)") - def _register_wsgi_service( + def _register_mounted_service( # Renamed from _register_wsgi_service self, service: BaseProtocolHandler, service_name: str, endpoints_registry: Dict[str, set], path: Optional[str] = None, ) -> None: - """Register a WSGI service.""" - # Create WSGI app - wsgi_app = service.create_wsgi_app() + """Register a service with a custom router.""" + router_or_app = service.create_fastapi_router() - # Determine mount path with fallback chain mount_path = ( path or getattr(service.config, "default_mount_path", None) @@ -296,10 +293,25 @@ def _register_wsgi_service( or f"/{service_name.lower().replace('service', '').replace('gateway', '')}" ) - # Mount the WSGI app - self.mount(mount_path, WSGIMiddleware(wsgi_app)) - endpoints_registry[service_name].add(f"WSGI:{mount_path}") - logger.debug(f"Registered WSGI service {service_name} at {mount_path}") + logger.debug(f"🔧 Registering {service_name} at: {mount_path}") + logger.debug(f" Router type: {type(router_or_app)}") + + # Use include_router for APIRouter instances + if isinstance(router_or_app, APIRouter): + if hasattr(router_or_app, "routes"): + logger.debug(f" Routes in router: {len(router_or_app.routes)}") + for route in router_or_app.routes: + if hasattr(route, "methods") and hasattr(route, "path"): + logger.info(f" - {route.methods} {route.path}") + + self.include_router(router_or_app, prefix=mount_path) + endpoints_registry[service_name].add(f"INCLUDED:{mount_path}") + logger.info(f"✅ Included router {service_name} at {mount_path}") + else: + # For FastAPI apps, use mount + self.mount(mount_path, router_or_app) + endpoints_registry[service_name].add(f"MOUNTED:{mount_path}") + logger.info(f"✅ Mounted app {service_name} at {mount_path}") def register_gateway( self, diff --git a/healthchain/gateway/soap/__init__.py b/healthchain/gateway/soap/__init__.py index 8972b003..f10889fe 100644 --- a/healthchain/gateway/soap/__init__.py +++ b/healthchain/gateway/soap/__init__.py @@ -1,10 +1,6 @@ -from .notereader import NoteReaderService -from .utils.epiccds import CDSServices -from .utils.model import ClientFault, ServerFault +from .notereader import NoteReaderService, NoteReaderConfig __all__ = [ "NoteReaderService", - "CDSServices", - "ClientFault", - "ServerFault", + "NoteReaderConfig", ] diff --git a/healthchain/gateway/soap/fastapiserver.py b/healthchain/gateway/soap/fastapiserver.py new file mode 100644 index 00000000..c5ce5ebf --- /dev/null +++ b/healthchain/gateway/soap/fastapiserver.py @@ -0,0 +1,376 @@ +# fastapiserver.py +from fastapi import APIRouter, Request, Response +import lxml.etree as ET +from typing import Callable, Optional, Any, Dict +from healthchain.models.requests.cdarequest import CdaRequest +from healthchain.models.responses.cdaresponse import CdaResponse +import base64 +import logging +from pathlib import Path + +logger = logging.getLogger(__name__) + +# SOAP namespace for envelope +SOAP_NS = "http://schemas.xmlsoap.org/soap/envelope/" +NSMAP = {"soap": SOAP_NS} + +# WSDL target namespace (from your WSDL) +WSDL_NS = "urn:epic-com:Common.2013.Services" + + +def build_soap_envelope(body_xml: ET._Element) -> bytes: + """ + Wrap the provided body element in a SOAP Envelope/Body and return bytes. + The body_xml element should already be namespaced (if desired). + """ + # Define namespace map with tns prefix for the WSDL namespace + nsmap = {"soap": SOAP_NS, "tns": WSDL_NS} + envelope = ET.Element(ET.QName(SOAP_NS, "Envelope"), nsmap=nsmap) + body = ET.SubElement(envelope, ET.QName(SOAP_NS, "Body")) + body.append(body_xml) + return ET.tostring(envelope, xml_declaration=True, encoding="utf-8") + + +def build_soap_fault(faultcode: str, faultstring: str) -> bytes: + """ + Construct a SOAP Fault element and return the full SOAP envelope bytes. + """ + # Fault must be in the Body, not namespaced by the WSDL + fault = ET.Element("Fault") + code_el = ET.SubElement(fault, "faultcode") + code_el.text = faultcode + string_el = ET.SubElement(fault, "faultstring") + string_el.text = faultstring + return build_soap_envelope(fault) + + +def safe_text_of(el: ET._Element) -> Optional[str]: + """ + Return the text content of an element. + + If the element has child elements (like Document containing XML), + serialize the children as a string. Otherwise return the text content. + """ + if el is None: + return None + + # Check if element has child elements + if len(el) > 0: + # Element has children - serialize them as XML + # This handles cases like ... + children_xml = [] + for child in el: + children_xml.append(ET.tostring(child, encoding="unicode")) + if children_xml: + return "".join(children_xml) + + # No children - just get text content + text = el.text if el.text is not None else None + # Also check if text is just whitespace + if text and text.strip(): + return text.strip() + + return None + + +def coerce_document_value(raw_val: Any) -> Optional[str]: + """ + Accept a few possible document representations and return a string XML payload. + - If raw_val is bytes -> decode as utf-8 + - If raw_val is a list -> use first element + - If raw_val looks like base64 -> decode + - If already a string -> return as-is + """ + if raw_val is None: + return None + + # if list, take first element + if isinstance(raw_val, (list, tuple)) and len(raw_val) > 0: + return coerce_document_value(raw_val[0]) + + if isinstance(raw_val, bytes): + try: + return raw_val.decode("utf-8") + except Exception: + # try base64 decode + try: + decoded = base64.b64decode(raw_val) + return decoded.decode("utf-8") + except Exception: + return raw_val.decode("latin1", errors="ignore") + + if isinstance(raw_val, str): + text = raw_val.strip() + + # First check if it looks like XML + if text.startswith("<"): + return text + + # Heuristic: if looks like base64 (A-Z,a-z,0-9,+,/ and length multiple of 4) + # and is longer than 20 chars + bchars = set( + "ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789+/=" + ) + if len(text) > 20 and all(c in bchars for c in text) and len(text) % 4 == 0: + try: + decoded = base64.b64decode(text) + # If decode yields bytes that look like XML/utf-8, return that + try: + decoded_str = decoded.decode("utf-8") + if decoded_str.strip().startswith("<"): + return decoded_str + # Otherwise return original + return text + except Exception: + # fallback to returning original string + return text + except Exception: + return text + return text + + # fallback + return str(raw_val) + + +def create_fastapi_soap_router( + service_name: str, + namespace: str, + handler: Callable[[CdaRequest], CdaResponse], + wsdl_path: Optional[str] = None, +) -> APIRouter: + """ + Create an APIRouter that exposes a SOAP endpoint for the ProcessDocument operation. + + - Expects SOAP document-style (per WSDL). + - Handles Operation: ProcessDocument + - Maps incoming element names (SessionID, WorkType, OrganizationID, Document) + to CdaRequest fields (session_id, work_type, organization_id, document). + - Returns ProcessDocumentResponse (Document, Error) wrapped in SOAP envelope. + - Returns SOAP Faults for client/server errors. + - Optionally serves WSDL at ?wsdl endpoint + + Args: + service_name: Name of the SOAP service + namespace: Target namespace for SOAP messages + handler: Handler function for ProcessDocument operation + wsdl_path: Optional path to WSDL file to serve + """ + + router = APIRouter() + + # Add WSDL endpoint if path provided + if wsdl_path: + + @router.get("/") + async def get_wsdl(request: Request): + """Serve WSDL when ?wsdl query parameter is present""" + if "wsdl" in request.query_params: + try: + wsdl_file = Path(wsdl_path) + if not wsdl_file.exists(): + logger.error(f"WSDL file not found: {wsdl_path}") + return Response(content="WSDL file not found", status_code=404) + + wsdl_content = wsdl_file.read_text(encoding="utf-8") + + # Replace placeholder location with actual server URL + base_url = str(request.base_url).rstrip("/") + path = request.url.path.rstrip("/") + actual_location = f"{base_url}{path}" + + # Replace the location in WSDL + wsdl_content = wsdl_content.replace( + "{{SERVICE_LOCATION}}", actual_location + ) + + return Response( + content=wsdl_content, media_type="text/xml; charset=utf-8" + ) + except Exception: + logger.exception("Error serving WSDL") + return Response( + content="An internal error has occurred while serving WSDL.", + status_code=500, + ) + + @router.post("/", summary=f"{service_name} SOAP entrypoint") + async def soap_entrypoint(request: Request): + raw = await request.body() + try: + parser = ET.XMLParser(resolve_entities=False) + xml = ET.fromstring(raw, parser=parser) + except ET.XMLSyntaxError as e: + logger.exception("Invalid XML received") + return Response( + content=build_soap_fault("Client", f"Invalid XML: {str(e)}"), + media_type="text/xml; charset=utf-8", + status_code=400, + ) + + # Find Body + body = xml.find("soap:Body", namespaces=NSMAP) + if body is None or len(body) == 0: + return Response( + content=build_soap_fault("Client", "Missing SOAP Body"), + media_type="text/xml; charset=utf-8", + status_code=400, + ) + + # The operation element (document style) should be the first child of Body + operation_el = body[0] + # operation local name (strip namespace if present) + operation_name = operation_el.tag.split("}")[-1] + + if operation_name != "ProcessDocument": + return Response( + content=build_soap_fault( + "Client", f"Unknown operation: {operation_name}" + ), + media_type="text/xml; charset=utf-8", + status_code=400, + ) + + # Extract fields (namespace-agnostic) + soap_params: Dict[str, Optional[str]] = {} + for child in operation_el: + local = child.tag.split("}")[-1] + soap_params[local] = safe_text_of(child) + + logger.info(f"Received SOAP request with params: {list(soap_params.keys())}") + + # Map WSDL element names to CdaRequest field names + # WSDL: SessionID, WorkType, OrganizationID, Document + mapped = { + "session_id": soap_params.get("SessionID"), + "work_type": soap_params.get("WorkType"), + "organization_id": soap_params.get("OrganizationID"), + # Document may be large; attempt to coerce/ decode various forms + "document": coerce_document_value(soap_params.get("Document")), + } + + # Validate minimal required fields + missing = [] + if not mapped["session_id"]: + missing.append("SessionID") + if not mapped["work_type"]: + missing.append("WorkType") + if not mapped["organization_id"]: + missing.append("OrganizationID") + if not mapped["document"]: + missing.append("Document") + + if missing: + return Response( + content=build_soap_fault( + "Client", f"Missing required parameter(s): {', '.join(missing)}" + ), + media_type="text/xml; charset=utf-8", + status_code=400, + ) + + # Build CdaRequest pydantic model + try: + request_obj = CdaRequest( + session_id=mapped["session_id"], + work_type=mapped["work_type"], + organization_id=mapped["organization_id"], + document=mapped["document"], + ) + except Exception as e: + logger.exception("Failed to construct CdaRequest") + return Response( + content=build_soap_fault( + "Client", f"Invalid request parameters: {str(e)}" + ), + media_type="text/xml; charset=utf-8", + status_code=400, + ) + + # Call the provided handler (user-provided ProcessDocument function) + try: + resp_obj = handler(request_obj) + logger.info( + f"Handler returned response: document_length={len(resp_obj.document) if resp_obj.document else 0}, error={resp_obj.error}" + ) + + # IMPORTANT: Response Document must be base64-encoded per protocol + # Check if handler returned plain text or already-encoded base64 + if resp_obj.document and isinstance(resp_obj.document, str): + # Try to decode as base64 to test if it's already encoded + is_already_base64 = False + try: + # If this succeeds, it's valid base64 + base64.b64decode(resp_obj.document, validate=True) + is_already_base64 = True + logger.info("Document is already base64-encoded") + except Exception: + # Not valid base64, need to encode it + pass + + if not is_already_base64: + # Encode the plain text to base64 + resp_obj.document = base64.b64encode( + resp_obj.document.encode("utf-8") + ).decode("ascii") + logger.info("Encoded plain text document to base64") + + except Exception as e: + logger.exception("Handler threw exception") + # Server fault + return Response( + content=build_soap_fault( + "Server", f"Server error processing request: {str(e)}" + ), + media_type="text/xml; charset=utf-8", + status_code=500, + ) + + # Convert response object to SOAP response element + # IMPORTANT: Match Spyne WSDL structure WITH ProcessDocumentResult wrapper! + # + # + # base64string + # string + # + # + + # Create response with explicit namespace map including tns prefix + nsmap_response = {"tns": namespace} + resp_el = ET.Element( + ET.QName(namespace, "ProcessDocumentResponse"), nsmap=nsmap_response + ) + + # Add the ProcessDocumentResult wrapper (required by Spyne WSDL) + result_wrapper = ET.SubElement( + resp_el, ET.QName(namespace, "ProcessDocumentResult") + ) + + # Document element (optional) - as base64-encoded string + doc_el = ET.SubElement(result_wrapper, ET.QName(namespace, "Document")) + if resp_obj.document is not None: + if isinstance(resp_obj.document, str): + doc_el.text = resp_obj.document + elif isinstance(resp_obj.document, bytes): + # If bytes, decode to ASCII string (base64 is ASCII-safe) + doc_el.text = resp_obj.document.decode("ascii") + else: + doc_el.text = str(resp_obj.document) + + # Error element (optional) + err_el = ET.SubElement(result_wrapper, ET.QName(namespace, "Error")) + if resp_obj.error is not None: + err_el.text = str(resp_obj.error) + + envelope_bytes = build_soap_envelope(resp_el) + + logger.info( + f"Sending SOAP response with document length: {len(resp_obj.document) if resp_obj.document else 0}" + ) + + return Response( + content=envelope_bytes, + media_type="text/xml; charset=utf-8", + status_code=200, + ) + + return router diff --git a/healthchain/gateway/soap/notereader.py b/healthchain/gateway/soap/notereader.py index 9bbd11ad..ff10e4f4 100644 --- a/healthchain/gateway/soap/notereader.py +++ b/healthchain/gateway/soap/notereader.py @@ -9,18 +9,15 @@ from typing import Any, Callable, Dict, Optional, TypeVar, Union -from pydantic import BaseModel -from spyne import Application -from spyne.protocol.soap import Soap11 -from spyne.server.wsgi import WsgiApplication +from pydantic import BaseModel, model_validator +from pathlib import Path from healthchain.gateway.base import BaseProtocolHandler from healthchain.gateway.events.dispatcher import EventDispatcher from healthchain.gateway.soap.events import create_notereader_event -from healthchain.gateway.soap.utils.epiccds import CDSServices -from healthchain.gateway.soap.utils.model import ClientFault, ServerFault from healthchain.models.requests.cdarequest import CdaRequest from healthchain.models.responses.cdaresponse import CdaResponse +from healthchain.gateway.soap.fastapiserver import create_fastapi_soap_router logger = logging.getLogger(__name__) @@ -36,6 +33,28 @@ class NoteReaderConfig(BaseModel): namespace: str = "urn:epic-com:Common.2013.Services" system_type: str = "EHR_CDA" default_mount_path: str = "/notereader" + wsdl_path: Optional[str] = None + + @model_validator(mode="after") + def resolve_wsdl_path(self): + """Auto-resolve WSDL path relative to healthchain package if not explicitly set""" + if self.wsdl_path is None: + try: + import healthchain + + healthchain_root = Path(healthchain.__file__).parent + wsdl_file = healthchain_root / "templates" / "epic_service.wsdl" + + if wsdl_file.exists(): + self.wsdl_path = str(wsdl_file) + print(f"✅ Auto-detected WSDL at: {self.wsdl_path}") + else: + print(f"⚠️ WSDL not found at: {wsdl_file}") + print(" SOAP service will work but ?wsdl endpoint unavailable") + except Exception as e: + print(f"⚠️ Could not auto-detect WSDL path: {e}") + + return self class NoteReaderService(BaseProtocolHandler[CdaRequest, CdaResponse]): @@ -60,8 +79,11 @@ def process_document(request: CdaRequest) -> CdaResponse: error=None ) - # Register the service with the API - app.register_service(service) + # Get the FastAPI router + router = service.create_fastapi_router() + + # Mount in FastAPI app + app.include_router(router, prefix="/notereader") ``` """ @@ -101,6 +123,13 @@ def method(self, method_name: str) -> Callable: Returns: Decorator function that registers the handler + + Example: + ```python + @service.method("ProcessDocument") + def process_document(request: CdaRequest) -> CdaResponse: + return CdaResponse(document="processed", error=None) + ``` """ def decorator(handler): @@ -113,6 +142,9 @@ def handle(self, operation: str, **params) -> Union[CdaResponse, Dict]: """ Process a SOAP request using registered handlers. + This method provides backward compatibility for existing code + that calls handle() directly instead of going through the SOAP router. + Args: operation: The SOAP method name e.g. ProcessDocument **params: Either a CdaRequest object or raw parameters @@ -125,12 +157,12 @@ def handle(self, operation: str, **params) -> Union[CdaResponse, Dict]: logger.warning(f"No handler registered for operation: {operation}") return CdaResponse(document="", error=f"No handler for {operation}") - # Extract or build the request object + # Extract the request object request = self._extract_request(operation, params) if not request: return CdaResponse(document="", error="Invalid request parameters") - # Execute the handler with the request + # Execute the handler return self._execute_handler(operation, request) def _extract_request(self, operation: str, params: Dict) -> Optional[CdaRequest]: @@ -145,7 +177,7 @@ def _extract_request(self, operation: str, params: Dict) -> Optional[CdaRequest] CdaRequest object or None if request couldn't be constructed """ try: - # Case 1: Direct CdaRequest passed as a parameter + # Case 1: Direct CdaRequest passed as 'request' parameter if "request" in params and isinstance(params["request"], CdaRequest): return params["request"] @@ -184,92 +216,122 @@ def _execute_handler(self, operation: str, request: CdaRequest) -> CdaResponse: result = handler(request) # Process the result - return self._process_result(result) + response = self._process_result(result) + + # Emit event if enabled + if self.use_events: + self._emit_document_event(operation, request, response) + + return response except Exception as e: logger.error(f"Error in {operation} handler: {str(e)}", exc_info=True) - return CdaResponse(document="", error=str(e)) + error_response = CdaResponse(document="", error=str(e)) - def _process_result(self, result: Any) -> CdaResponse: - """ - Convert handler result to a CdaResponse. + # Emit event for error case too + if self.use_events: + self._emit_document_event(operation, request, error_response) - Args: - result: The result returned by the handler + return error_response - Returns: - CdaResponse object + def create_fastapi_router(self): """ - # If the result is already a CdaResponse, return it - if isinstance(result, CdaResponse): - return result - try: - # Try to convert to CdaResponse if possible - if isinstance(result, dict): - return CdaResponse(**result) - logger.warning(f"Unexpected result type from handler: {type(result)}") - return CdaResponse(document=str(result), error=None) - except Exception as e: - logger.error(f"Error processing result to CdaResponse: {str(e)}") - return CdaResponse(document="", error="Invalid response format") - - def create_wsgi_app(self) -> WsgiApplication: - """ - Creates a WSGI application for the SOAP service. + Creates a FastAPI router for the SOAP service. - This method sets up the WSGI application with proper SOAP protocol - configuration and handler registration. + This method sets up the FastAPI router with proper SOAP protocol + configuration and handler registration. The router includes event + emission if an event dispatcher is configured. Returns: - A configured WsgiApplication ready to mount in FastAPI + APIRouter: A configured FastAPI router ready to mount Raises: ValueError: If no ProcessDocument handler is registered - """ - # TODO: Maybe you want to be more explicit that you only need to register a handler for ProcessDocument - # Can you register multiple services in the same app? Who knows?? Let's find out!! + Example: + ```python + service = NoteReaderService() + + @service.method("ProcessDocument") + def handler(req): + return CdaResponse(document="ok", error=None) + + router = service.create_fastapi_router() + app.include_router(router, prefix="/soap") + ``` + """ if "ProcessDocument" not in self._handlers: raise ValueError( "No ProcessDocument handler registered. " - "You must register a handler before creating the WSGI app. " "Use @service.method('ProcessDocument') to register a handler." ) - # Create adapter for SOAP service integration - def service_adapter(cda_request: CdaRequest) -> CdaResponse: - # This calls the handle method to process the request + # Get the base handler + base_handler = self._handlers["ProcessDocument"] + + # Create a wrapper that handles events and error processing + def handler_with_events(request: CdaRequest) -> CdaResponse: + """Wrapper that adds event emission to the handler""" try: - # This will be executed synchronously in the SOAP context - handler = self._handlers["ProcessDocument"] - result = handler(cda_request) - processed_result = self._process_result(result) + # Call the user's handler + result = base_handler(request) + + # Process result to ensure it's a CdaResponse + response = self._process_result(result) + + # Emit event if enabled (even if dispatcher is None, let emit_event handle it) + if self.use_events: + self._emit_document_event("ProcessDocument", request, response) + + return response - # Emit event if we have an event dispatcher - if self.events.dispatcher and self.use_events: + except Exception as e: + logger.error( + f"Error in ProcessDocument handler: {str(e)}", exc_info=True + ) + error_response = CdaResponse(document="", error=str(e)) + + # Emit event for error case too + if self.use_events: self._emit_document_event( - "ProcessDocument", cda_request, processed_result + "ProcessDocument", request, error_response ) - return processed_result - except Exception as e: - logger.error(f"Error in SOAP service adapter: {str(e)}") - return CdaResponse(document="", error=str(e)) - - # Assign the service adapter function to CDSServices._service - CDSServices._service = service_adapter - - # Configure the Spyne application - application = Application( - [CDSServices], - name=self.config.service_name, - tns=self.config.namespace, - in_protocol=Soap11(validator="lxml"), - out_protocol=Soap11(), - classes=[ServerFault, ClientFault], + return error_response + + # Create and return the FastAPI router + return create_fastapi_soap_router( + service_name=self.config.service_name, + namespace=self.config.namespace, + handler=handler_with_events, + wsdl_path=self.config.wsdl_path, # Pass WSDL path ) - # Create WSGI app - return WsgiApplication(application) + + def _process_result(self, result: Any) -> CdaResponse: + """ + Convert handler result to a CdaResponse. + + Args: + result: The result returned by the handler + + Returns: + CdaResponse object + """ + # If the result is already a CdaResponse, return it + if isinstance(result, CdaResponse): + return result + + try: + # Try to convert to CdaResponse if possible + if isinstance(result, dict): + return CdaResponse(**result) + + logger.warning(f"Unexpected result type from handler: {type(result)}") + return CdaResponse(document=str(result), error=None) + + except Exception as e: + logger.error(f"Error processing result to CdaResponse: {str(e)}") + return CdaResponse(document="", error="Invalid response format") def _emit_document_event( self, operation: str, request: CdaRequest, response: CdaResponse diff --git a/healthchain/gateway/soap/utils/epiccds.py b/healthchain/gateway/soap/utils/epiccds.py deleted file mode 100644 index 9b64ef88..00000000 --- a/healthchain/gateway/soap/utils/epiccds.py +++ /dev/null @@ -1,88 +0,0 @@ -import logging - -from spyne import rpc, ServiceBase, Unicode, ByteArray -from healthchain.models.requests.cdarequest import CdaRequest - -from healthchain.gateway.soap.utils.model import Response, ClientFault, ServerFault - - -log = logging.getLogger(__name__) - - -# I'm not happy about this name either but that's what Epic wants -class CDSServices(ServiceBase): - """ - Represents a CDSServices object that provides methods for processing documents. - """ - - _service = None - - # TODO The _in_arg_names are order sensitive here so need to find a way to make this - # configurable and easier to catch errors - @rpc( - Unicode, - Unicode, - Unicode, - ByteArray, - _in_arg_names={ - "sessionId": "SessionID", - "workType": "WorkType", - "organizationId": "OrganizationID", - "document": "Document", - }, - _wsdl_part_name="parameters", - _returns=Response, - _faults=[ClientFault, ServerFault], - ) - def ProcessDocument(ctx, sessionId, workType, organizationId, document): - """ - Processes a document using the specified session ID, work type, organization ID, and document. - - Args: - ctx (object): The context object. - sessionId (str): The session ID. - workType (str): The work type. - organizationId (str): The organization ID. - document (bytes): The document to be processed. - - Returns: - Response: The response object containing the processed document and any errors. - - Raises: - ClientFault: If any of the required parameters are missing. - ServerFault: If there is a server processing error. - ServerFault: If an unexpected error occurs. - """ - try: - if not sessionId: - raise ClientFault("Missing required parameter: sessionId") - if not workType: - raise ClientFault("Missing required parameter: workType") - if not organizationId: - raise ClientFault("Missing required parameter: organizationId") - if not document: - raise ClientFault("Missing required parameter: document") - - request_document_xml = document[0].decode("UTF-8") - - cda_request = CdaRequest(document=request_document_xml) - cda_response = ctx.descriptor.service_class._service(cda_request) - - if cda_response.error: - raise ServerFault(f"Server processing error: {cda_response.error}") - - response = Response( - Document=cda_response.document.encode("UTF-8"), Error=cda_response.error - ) - - return response - - except ClientFault as e: - # Re-raise client faults - raise e - except ServerFault as e: - # Re-raise server faults - raise e - except Exception as e: - # Catch all other exceptions and raise as server faults - raise ServerFault(f"An unexpected error occurred: {str(e)}") diff --git a/healthchain/gateway/soap/utils/model/__init__.py b/healthchain/gateway/soap/utils/model/__init__.py deleted file mode 100644 index 1da9fdf9..00000000 --- a/healthchain/gateway/soap/utils/model/__init__.py +++ /dev/null @@ -1,5 +0,0 @@ -from .epicserverfault import ServerFault -from .epicclientfault import ClientFault -from .epicresponse import Response - -__all__ = ["ServerFault", "ClientFault", "Response"] diff --git a/healthchain/gateway/soap/utils/model/epicclientfault.py b/healthchain/gateway/soap/utils/model/epicclientfault.py deleted file mode 100644 index 45023a82..00000000 --- a/healthchain/gateway/soap/utils/model/epicclientfault.py +++ /dev/null @@ -1,6 +0,0 @@ -from spyne import Unicode, Fault - - -class ClientFault(Fault): - __namespace__ = "urn:epicsystems.com:Interconnect.2004-05.Faults" - Type = Unicode diff --git a/healthchain/gateway/soap/utils/model/epicresponse.py b/healthchain/gateway/soap/utils/model/epicresponse.py deleted file mode 100644 index 3748e3f4..00000000 --- a/healthchain/gateway/soap/utils/model/epicresponse.py +++ /dev/null @@ -1,8 +0,0 @@ -from spyne import ComplexModel -from spyne import Unicode, ByteArray - - -class Response(ComplexModel): - __namespace__ = "urn:epic-com:Common.2013.Services" - Document = ByteArray - Error = Unicode diff --git a/healthchain/gateway/soap/utils/model/epicserverfault.py b/healthchain/gateway/soap/utils/model/epicserverfault.py deleted file mode 100644 index 83929cbe..00000000 --- a/healthchain/gateway/soap/utils/model/epicserverfault.py +++ /dev/null @@ -1,6 +0,0 @@ -from spyne import Unicode, Fault - - -class ServerFault(Fault): - __namespace__ = "urn:epicsystems.com:Interconnect.2004-05.Faults" - Type = Unicode diff --git a/healthchain/gateway/soap/utils/wsgi.py b/healthchain/gateway/soap/utils/wsgi.py index 0cf45dc1..e69de29b 100644 --- a/healthchain/gateway/soap/utils/wsgi.py +++ b/healthchain/gateway/soap/utils/wsgi.py @@ -1,43 +0,0 @@ -from spyne import Application -from spyne.protocol.soap import Soap11 -from spyne.server.wsgi import WsgiApplication - -from typing import Callable - -from healthchain.gateway.soap.utils.epiccds import CDSServices -from healthchain.gateway.soap.utils.model import ClientFault, ServerFault - - -def start_wsgi( - service: Callable, - app_name: str = "ICDSServices", - tns: str = "urn:epic-com:Common.2013.Services", -): - """ - Starts the WSGI application for the SOAP service. - - Args: - service (Callable): The service function to be used. - app_name (str, optional): The name of the application. Defaults to "ICDSServices". - tns (str, optional): The target namespace for the SOAP service. Defaults to "urn:epic-com:Common.2013.Services". - - Returns: - WsgiApplication: The WSGI application for the SOAP service. - - # TODO: Add support for custom document interfaces - """ - CDSServices._service = service - - application = Application( - [CDSServices], - name=app_name, - tns=tns, - in_protocol=Soap11(validator="lxml"), - out_protocol=Soap11(), - classes=[ServerFault, ClientFault], - # documents_container=CustomInterfaceDocuments, - ) - - wsgi_app = WsgiApplication(application) - - return wsgi_app diff --git a/healthchain/sandbox/sandboxclient.py b/healthchain/sandbox/sandboxclient.py index c3f59576..6919e8b3 100644 --- a/healthchain/sandbox/sandboxclient.py +++ b/healthchain/sandbox/sandboxclient.py @@ -46,7 +46,7 @@ class SandboxClient: Load CDA file from path: >>> client = SandboxClient( - ... url="http://localhost:8000/notereader/fhir/", + ... url="http://localhost:8000/notereader/?wsdl", ... protocol="soap" ... ) >>> client.load_from_path("./data/clinical_note.xml") diff --git a/healthchain/templates/epic_service.wsdl b/healthchain/templates/epic_service.wsdl new file mode 100644 index 00000000..b518952f --- /dev/null +++ b/healthchain/templates/epic_service.wsdl @@ -0,0 +1,84 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Processes a document using the specified session ID, work type, organization ID, and document. Args: ctx (object): The context object. sessionId (str): The session ID. workType (str): The work type. organizationId (str): The organization ID. document (bytes): The document to be processed. Returns: Response: The response object containing the processed document and any errors. Raises: ClientFault: If any of the required parameters are missing. ServerFault: If there is a server processing error. ServerFault: If an unexpected error occurs. + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/pyproject.toml b/pyproject.toml index 77f30c4b..3b467ebe 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -6,7 +6,7 @@ authors = [ { name = "Jennifer Jiang-Kells", email = "jenniferjiangkells@gmail.com" }, { name = "Adam Kells", email = "adamjkells93@gmail.com" }, ] -requires-python = ">=3.10,<3.12" +requires-python = ">=3.10,<3.14" readme = "README.md" license = { text = "Apache-2.0" } keywords = [ @@ -32,16 +32,15 @@ dependencies = [ "eval_type_backport>=0.1.0,<0.2", "pandas>=1.0.0,<3.0.0", "spacy>=3.0.0,<4.0.0", - "numpy<2.0.0", + "numpy>=2,<3", "colorama>=0.4.6,<0.5", "faker>=25.1.0,<26", "termcolor>=2.4.0,<3", "jinja2>=3.1.3,<4", - "fastapi>=0.115.3,<0.116", + "fastapi>=0.115.3,<0.128", "starlette>=0.40.0,<0.42.0", "uvicorn>=0.24.0,<0.25", "httpx>=0.27.0,<0.28", - "spyne>=2.14.0,<3", "lxml>=5.2.2,<6", "xmltodict>=0.13.0,<0.14", "fhir-resources>=8.0.0,<9", diff --git a/scripts/healthchainapi_e2e_demo.py b/scripts/healthchainapi_e2e_demo.py index 27483168..0fe18ced 100644 --- a/scripts/healthchainapi_e2e_demo.py +++ b/scripts/healthchainapi_e2e_demo.py @@ -414,7 +414,7 @@ def create_sandboxes(): # NoteReader Sandbox notereader_client = SandboxClient( - url=base_url + "/notereader/fhir/", + url=base_url + "/notereader/?wsdl", workflow=CONFIG["workflows"]["notereader"], protocol="soap", ) diff --git a/tests/gateway/test_fast_api_soap_server.py b/tests/gateway/test_fast_api_soap_server.py new file mode 100644 index 00000000..3b54dc76 --- /dev/null +++ b/tests/gateway/test_fast_api_soap_server.py @@ -0,0 +1,402 @@ +""" +Tests for FastAPI-based SOAP server implementation. + +These tests replace the old Spyne-based tests and verify the new +FastAPI SOAP router functionality. +""" + +import base64 +import pytest +import lxml.etree as ET +from fastapi import FastAPI +from fastapi.testclient import TestClient + +from healthchain.gateway.soap.notereader import NoteReaderService, NoteReaderConfig +from healthchain.models.requests.cdarequest import CdaRequest +from healthchain.models.responses.cdaresponse import CdaResponse + + +# Namespace mappings for parsing SOAP responses +SOAP_NAMESPACES = { + "soap": "http://schemas.xmlsoap.org/soap/envelope/", + "tns": "urn:epic-com:Common.2013.Services", +} + + +def parse_soap_response(response_content: bytes) -> ET._Element: + """Parse SOAP response XML and return the root element""" + return ET.fromstring(response_content) + + +def get_document_from_response(response_content: bytes) -> str: + """Extract and decode the Document element from SOAP response""" + xml = parse_soap_response(response_content) + doc_element = xml.find(".//tns:Document", SOAP_NAMESPACES) + if doc_element is not None and doc_element.text: + # Document is base64 encoded per WSDL + return base64.b64decode(doc_element.text).decode("utf-8") + return "" + + +def get_error_from_response(response_content: bytes) -> str: + """Extract the Error element text from SOAP response""" + xml = parse_soap_response(response_content) + error_element = xml.find(".//tns:Error", SOAP_NAMESPACES) + if error_element is not None: + return error_element.text or "" + return "" + + +@pytest.fixture +def notereader_service(): + """Create a NoteReaderService instance for testing""" + return NoteReaderService(use_events=False) + + +@pytest.fixture +def app_with_soap(notereader_service): + """Create a FastAPI app with SOAP service mounted""" + app = FastAPI() + + # Register a basic handler + @notereader_service.method("ProcessDocument") + def process_document(request: CdaRequest) -> CdaResponse: + return CdaResponse(document=f"Processed: {request.document}", error=None) + + # Mount the router + router = notereader_service.create_fastapi_router() + app.include_router(router, prefix="/soap") + + return app + + +@pytest.fixture +def client(app_with_soap): + """Create a test client""" + return TestClient(app_with_soap) + + +def build_soap_request( + session_id=None, work_type=None, organization_id=None, document=None +): + """Helper to build SOAP request XML - only includes provided parameters""" + parts = [ + '', + '', + " ", + ' ', + ] + + if session_id is not None: + parts.append(f" {session_id}") + if work_type is not None: + parts.append(f" {work_type}") + if organization_id is not None: + parts.append(f" {organization_id}") + if document is not None: + parts.append(f" {document}") + + parts.extend([" ", " ", ""]) + + return "\n".join(parts) + + +class TestSOAPValidation: + """Test SOAP request validation""" + + def test_debug_request(self, client): + """Debug test to see what's being sent and received""" + soap_request = build_soap_request( + session_id="12345", + work_type="TestWork", + organization_id="OrgID", + document="test", + ) + + response = client.post("/soap/", content=soap_request) + + assert response.status_code == 200 + + def test_missing_session_id(self, client): + """Test that missing SessionID returns SOAP fault""" + soap_request = build_soap_request( + work_type="WorkType", organization_id="OrgID", document="test" + ) + + response = client.post("/soap/", content=soap_request) + + assert response.status_code == 400 + assert b"faultcode" in response.content + assert b"SessionID" in response.content + + def test_missing_work_type(self, client): + """Test that missing WorkType returns SOAP fault""" + soap_request = build_soap_request( + session_id="12345", organization_id="OrgID", document="test" + ) + + response = client.post("/soap/", content=soap_request) + + assert response.status_code == 400 + assert b"faultcode" in response.content + assert b"WorkType" in response.content + + def test_missing_organization_id(self, client): + """Test that missing OrganizationID returns SOAP fault""" + soap_request = build_soap_request( + session_id="12345", work_type="WorkType", document="test" + ) + + response = client.post("/soap/", content=soap_request) + + assert response.status_code == 400 + assert b"faultcode" in response.content + assert b"OrganizationID" in response.content + + def test_missing_document(self, client): + """Test that missing Document returns SOAP fault""" + soap_request = build_soap_request( + session_id="12345", work_type="WorkType", organization_id="OrgID" + ) + + response = client.post("/soap/", content=soap_request) + + assert response.status_code == 400 + assert b"faultcode" in response.content + assert b"Document" in response.content + + def test_invalid_xml(self, client): + """Test that invalid XML returns SOAP fault""" + invalid_xml = "This is not XML" + + response = client.post("/soap/", content=invalid_xml) + + assert response.status_code == 400 + assert b"faultcode" in response.content + assert b"Invalid XML" in response.content + + def test_missing_soap_body(self, client): + """Test that missing SOAP body returns fault""" + soap_request = """ + +""" + + response = client.post("/soap/", content=soap_request) + + assert response.status_code == 400 + assert b"Missing SOAP Body" in response.content + + +class TestProcessDocument: + """Test ProcessDocument operation""" + + def test_successful_request(self, client): + """Test successful document processing""" + import base64 + import lxml.etree as ET + + # Encode the document as base64 (as required by WSDL) + plain_document = "test data" + encoded_document = base64.b64encode(plain_document.encode("utf-8")).decode( + "ascii" + ) + + soap_request = build_soap_request( + session_id="12345", + work_type="TestWork", + organization_id="OrgID", + document=encoded_document, # Send base64-encoded + ) + + response = client.post("/soap/", content=soap_request) + + assert response.status_code == 200 + assert b"ProcessDocumentResponse" in response.content + + # Parse response to check structure + xml = ET.fromstring(response.content) + + # Find the Document element (it's base64 encoded per WSDL) + namespaces = { + "soap": "http://schemas.xmlsoap.org/soap/envelope/", + "tns": "urn:epic-com:Common.2013.Services", + } + + doc_element = xml.find(".//tns:Document", namespaces) + assert doc_element is not None, "Document element should be present" + + # Decode base64 content + if doc_element.text: + decoded = base64.b64decode(doc_element.text).decode("utf-8") + assert ( + "Processed:" in decoded + ), f"Expected 'Processed:' in decoded document, got: {decoded}" + assert plain_document in decoded, "Expected original document in response" + + def test_handler_returns_error(self): + """Test when handler returns a CdaResponse with error""" + app = FastAPI() + service = NoteReaderService(use_events=False) + + @service.method("ProcessDocument") + def error_handler(request: CdaRequest) -> CdaResponse: + return CdaResponse(document="", error="Processing failed") + + router = service.create_fastapi_router() + app.include_router(router, prefix="/soap") + client = TestClient(app) + + soap_request = build_soap_request( + session_id="12345", + work_type="TestWork", + organization_id="OrgID", + document="test", + ) + + response = client.post("/soap/", content=soap_request) + + # Should return 200 with error in response + assert response.status_code == 200 + assert b"" in response.content or b"" in response.content + assert b"Processing failed" in response.content + + def test_handler_raises_exception(self): + """Test when handler raises an exception""" + app = FastAPI() + service = NoteReaderService(use_events=False) + + @service.method("ProcessDocument") + def failing_handler(request: CdaRequest) -> CdaResponse: + raise ValueError("Something went wrong") + + router = service.create_fastapi_router() + app.include_router(router, prefix="/soap") + client = TestClient(app) + + soap_request = build_soap_request( + session_id="12345", + work_type="TestWork", + organization_id="OrgID", + document="test", + ) + + response = client.post("/soap/", content=soap_request) + + # Should return 200 with error in response (error handled gracefully) + assert response.status_code == 200 + assert b"" in response.content or b"" in response.content + assert b"Something went wrong" in response.content + + def test_document_with_special_characters(self, client): + """Test document with XML special characters""" + # Note: In real SOAP, this would be CDATA or encoded + soap_request = build_soap_request( + session_id="12345", + work_type="TestWork", + organization_id="OrgID", + document="<xml>test</xml>", + ) + + response = client.post("/soap/", content=soap_request) + + assert response.status_code == 200 + + +class TestServiceConfiguration: + """Test service configuration and setup""" + + def test_no_handler_registered(self): + """Test that creating router without handler raises error""" + service = NoteReaderService(use_events=False) + + with pytest.raises(ValueError) as exc_info: + service.create_fastapi_router() + + assert "No ProcessDocument handler registered" in str(exc_info.value) + + def test_custom_config(self): + """Test service with custom configuration""" + config = NoteReaderConfig( + service_name="CustomService", + namespace="urn:custom:namespace", + system_type="CUSTOM_SYSTEM", + ) + service = NoteReaderService(config=config, use_events=False) + + metadata = service.get_metadata() + + assert metadata["soap_service"] == "CustomService" + assert metadata["namespace"] == "urn:custom:namespace" + assert metadata["system_type"] == "CUSTOM_SYSTEM" + + def test_handler_decorator(self): + """Test that method decorator properly registers handler""" + service = NoteReaderService(use_events=False) + + @service.method("ProcessDocument") + def my_handler(request: CdaRequest) -> CdaResponse: + return CdaResponse(document="test", error=None) + + # Should be able to create router now + router = service.create_fastapi_router() + assert router is not None + + def test_no_events_when_disabled(self): + """Test that events are not emitted when disabled""" + service = NoteReaderService(use_events=False) + + # Mock the emit_event method to track calls + events_emitted = [] + + def mock_emit_event(*args, **kwargs): + events_emitted.append({"args": args, "kwargs": kwargs}) + + service.events.emit_event = mock_emit_event + + @service.method("ProcessDocument") + def handler(request: CdaRequest) -> CdaResponse: + return CdaResponse(document="processed", error=None) + + app = FastAPI() + router = service.create_fastapi_router() + app.include_router(router, prefix="/soap") + client = TestClient(app) + + soap_request = build_soap_request( + session_id="12345", + work_type="TestWork", + organization_id="OrgID", + document="test", + ) + + response = client.post("/soap/", content=soap_request) + + assert response.status_code == 200 + + # When use_events=False, emit_event should not be called + assert ( + len(events_emitted) == 0 + ), f"Expected 0 events when disabled, got {len(events_emitted)}" + + +class TestDocumentCoercion: + """Test document value coercion""" + + def test_base64_encoded_document(self, client): + """Test handling of base64-encoded documents""" + import base64 + + original_doc = "test" + encoded_doc = base64.b64encode(original_doc.encode()).decode() + + soap_request = build_soap_request( + session_id="12345", + work_type="TestWork", + organization_id="OrgID", + document=encoded_doc, + ) + + response = client.post("/soap/", content=soap_request) + + # Should handle base64 decoding + assert response.status_code == 200 diff --git a/tests/gateway/test_notereader.py b/tests/gateway/test_notereader.py index 60caccce..4a06fc20 100644 --- a/tests/gateway/test_notereader.py +++ b/tests/gateway/test_notereader.py @@ -1,5 +1,5 @@ import pytest -from unittest.mock import patch, MagicMock +from unittest.mock import MagicMock from healthchain.gateway.soap.notereader import ( NoteReaderService, @@ -7,6 +7,7 @@ ) from healthchain.models.requests import CdaRequest from healthchain.models.responses.cdaresponse import CdaResponse +from fastapi import APIRouter @pytest.mark.parametrize( @@ -110,13 +111,8 @@ def test_notereader_gateway_process_result(): assert result.document == "test_dict" -@patch("healthchain.gateway.soap.notereader.Application") -@patch("healthchain.gateway.soap.notereader.WsgiApplication") -def test_notereader_gateway_create_wsgi_app(mock_wsgi, mock_application): - """Test WSGI app creation for SOAP service""" - mock_wsgi_instance = MagicMock() - mock_wsgi.return_value = mock_wsgi_instance - +def test_notereader_gateway_create_fastapi_router(): + """Test that NoteReaderService creates a valid FastAPI router""" gateway = NoteReaderService() # Register required ProcessDocument handler @@ -124,13 +120,24 @@ def test_notereader_gateway_create_wsgi_app(mock_wsgi, mock_application): def process_document(request): return CdaResponse(document="processed", error=None) - # Create WSGI app - wsgi_app = gateway.create_wsgi_app() + # Create FastAPI router + router = gateway.create_fastapi_router() + + # Verify it returns an APIRouter + assert isinstance(router, APIRouter) + + # Verify the router has routes registered + routes = [route for route in router.routes] + assert len(routes) > 0, "Router should have routes" - # Verify WSGI app was created - assert wsgi_app is mock_wsgi_instance - mock_wsgi.assert_called_once() - mock_application.assert_called_once() + # Verify POST route exists (for SOAP requests) + post_routes = [r for r in routes if hasattr(r, "methods") and "POST" in r.methods] + assert len(post_routes) > 0, "Router should have POST route for SOAP" + + # Verify GET route exists if WSDL is configured (for ?wsdl endpoint) + get_routes = [r for r in routes if hasattr(r, "methods") and "GET" in r.methods] + if gateway.config.wsdl_path: + assert len(get_routes) > 0, "Router should have GET route for WSDL" # Verify we can get the default mount path from config config = gateway.config @@ -138,13 +145,67 @@ def process_document(request): assert config.default_mount_path == "/notereader" -def test_notereader_gateway_create_wsgi_app_no_handler(): +def test_notereader_gateway_create_fastapi_router_without_handler(): + """Test that creating router without handler raises ValueError""" + gateway = NoteReaderService() + + # Should raise error if no ProcessDocument handler registered + with pytest.raises(ValueError, match="No ProcessDocument handler registered"): + gateway.create_fastapi_router() + + +@pytest.mark.asyncio +async def test_notereader_gateway_soap_request_processing(): + """Test that the router can process a SOAP request""" + from fastapi.testclient import TestClient + from fastapi import FastAPI + + gateway = NoteReaderService() + + @gateway.method("ProcessDocument") + def process_document(request): + # Return a CdaResponse with base64-encoded document + import base64 + + doc = base64.b64encode(b"processed").decode("ascii") + return CdaResponse(document=doc, error=None) + + router = gateway.create_fastapi_router() + app = FastAPI() + app.include_router(router, prefix="/notereader") + + client = TestClient(app) + + # Create a minimal SOAP request + soap_request = """ + + + + test-session + 1 + TEST + PHhtbD50ZXN0PC94bWw+ + + + """ + + response = client.post( + "/notereader/", content=soap_request, headers={"Content-Type": "text/xml"} + ) + + assert response.status_code == 200 + assert b"ProcessDocumentResponse" in response.content + assert b"ProcessDocumentResult" in response.content + + +def test_notereader_gateway_create_fastapi_router_no_handler(): """Test WSGI app creation fails without ProcessDocument handler""" gateway = NoteReaderService() # No handler registered - should raise ValueError with pytest.raises(ValueError): - gateway.create_wsgi_app() + gateway.create_fastapi_router() def test_notereader_gateway_get_metadata(): diff --git a/tests/gateway/test_soap_server.py b/tests/gateway/test_soap_server.py deleted file mode 100644 index 569caff4..00000000 --- a/tests/gateway/test_soap_server.py +++ /dev/null @@ -1,75 +0,0 @@ -import pytest - -from unittest.mock import MagicMock -from healthchain.gateway.soap.utils.epiccds import CDSServices -from healthchain.gateway.soap.utils.model import ClientFault, ServerFault - - -@pytest.fixture -def soap_cdsservices(): - return CDSServices() - - -def test_ProcessDocument_missing_parameters(soap_cdsservices): - mock_ctx = MagicMock() - with pytest.raises(ClientFault) as exc_info: - soap_cdsservices.ProcessDocument( - mock_ctx, None, "WorkType", "OrganizationID", [b"..."] - ) - assert "Missing required parameter: sessionId" in str(exc_info.value) - - with pytest.raises(ClientFault) as exc_info: - soap_cdsservices.ProcessDocument( - mock_ctx, "123456", None, "OrganizationID", [b"..."] - ) - assert "Missing required parameter: workType" in str(exc_info.value) - - with pytest.raises(ClientFault) as exc_info: - soap_cdsservices.ProcessDocument( - mock_ctx, "123456", "WorkType", None, [b"..."] - ) - assert "Missing required parameter: organizationId" in str(exc_info.value) - - with pytest.raises(ClientFault) as exc_info: - soap_cdsservices.ProcessDocument( - mock_ctx, "123456", "WorkType", "OrganizationID", None - ) - assert "Missing required parameter: document" in str(exc_info.value) - - -def test_ProcessDocument_successful_request(soap_cdsservices): - mock_ctx = MagicMock() - mock_ctx.descriptor.service_class._service.return_value = MagicMock( - document="Document", error=None - ) - - sessionId = "123456" - workType = "WorkType" - organizationId = "OrganizationID" - document = [b"..."] - - response = soap_cdsservices.ProcessDocument( - mock_ctx, sessionId, workType, organizationId, document - ) - - assert response is not None - assert response.Document is not None - assert response.Error is None - - -def test_ProcessDocument_server_processing_error(soap_cdsservices): - mock_ctx = MagicMock() - mock_ctx.descriptor.service_class._service.return_value = MagicMock( - document="Document", error="Error" - ) - - sessionId = "123456" - workType = "WorkType" - organizationId = "OrganizationID" - document = [b"..."] - - # Simulate a server processing error - with pytest.raises(ServerFault): - soap_cdsservices.ProcessDocument( - mock_ctx, sessionId, workType, organizationId, document - ) diff --git a/tests/sandbox/test_clindoc_sandbox.py b/tests/sandbox/test_clindoc_sandbox.py index e1ae80d0..60f96586 100644 --- a/tests/sandbox/test_clindoc_sandbox.py +++ b/tests/sandbox/test_clindoc_sandbox.py @@ -24,7 +24,7 @@ def process_document(cda_request: CdaRequest) -> CdaResponse: # Create SandboxClient for SOAP/CDA client = SandboxClient( - url="http://localhost:8000/notereader/fhir/", + url="http://localhost:8000/notereader/?wsdl", workflow="sign-note-inpatient", protocol="soap", ) @@ -73,7 +73,7 @@ def test_notereader_sandbox_workflow_execution(): """Test executing a NoteReader workflow with SandboxClient""" # Create SandboxClient client = SandboxClient( - url="http://localhost:8000/notereader/fhir/", + url="http://localhost:8000/notereader/?wsdl", workflow="sign-note-inpatient", protocol="soap", ) diff --git a/tests/sandbox/test_sandbox_client.py b/tests/sandbox/test_sandbox_client.py index d7a71614..75ae184d 100644 --- a/tests/sandbox/test_sandbox_client.py +++ b/tests/sandbox/test_sandbox_client.py @@ -20,7 +20,7 @@ def test_load_from_path_single_xml_file(tmp_path): cda_file.write_text("Test CDA") client = SandboxClient( - url="http://localhost:8000/notereader/fhir/", + url="http://localhost:8000/notereader/?wsdl", workflow="sign-note-inpatient", protocol="soap", ) @@ -39,7 +39,7 @@ def test_load_from_path_directory_with_pattern(tmp_path): (tmp_path / "other.txt").write_text("Not XML") client = SandboxClient( - url="http://localhost:8000/notereader/fhir/", + url="http://localhost:8000/notereader/?wsdl", workflow="sign-note-inpatient", protocol="soap", ) @@ -56,7 +56,7 @@ def test_load_from_path_directory_all_files(tmp_path): (tmp_path / "note2.xml").write_text("Note 2") client = 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