subgenome/environment.yml at main · deconvolute/subgenome · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
name: subgenome
channels:
  - nsis
  - defaults
  - bioconda
  - conda-forge
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - blast=2.13.0=hf3cf87c_0
  - bzip2=1.0.8=h7f98852_4
  - c-ares=1.18.1=h7f98852_0
  - ca-certificates=2022.10.11=h06a4308_0
  - cd-hit=4.8.1=h5b5514e_7
  - certifi=2020.6.20=pyhd3eb1b0_3
  - clustalw=2.1=h9f5acd7_7
  - curl=7.86.0=h2283fc2_0
  - entrez-direct=16.2=he881be0_1
  - expat=2.5.0=h27087fc_0
  - gettext=0.21.1=h27087fc_0
  - keyutils=1.6.1=h166bdaf_0
  - krb5=1.19.3=h08a2579_0
  - libcurl=7.86.0=h2283fc2_0
  - libdb=6.2.32=h9c3ff4c_0
  - libedit=3.1.20191231=he28a2e2_2
  - libev=4.33=h516909a_1
  - libffi=3.4.2=h6a678d5_6
  - libgcc=7.2.0=h69d50b8_2
  - libgcc-ng=12.2.0=h65d4601_19
  - libgomp=12.2.0=h65d4601_19
  - libidn2=2.3.4=h166bdaf_0
  - libnghttp2=1.47.0=hff17c54_1
  - libnsl=2.0.0=h7f98852_0
  - libssh2=1.10.0=hf14f497_3
  - libstdcxx-ng=12.2.0=h46fd767_19
  - libunistring=0.9.10=h7f98852_0
  - libzlib=1.2.13=h166bdaf_4
  - ncurses=6.3=h27087fc_1
  - openssl=3.0.7=h166bdaf_0
  - paml=4.9=hec16e2b_7
  - pcre=8.45=h9c3ff4c_0
  - perl=5.32.1=2_h7f98852_perl5
  - perl-algorithm-diff=1.1903=pl5321hdfd78af_3
  - perl-archive-tar=2.40=pl5321hdfd78af_0
  - perl-base=2.23=pl5321hdfd78af_2
  - perl-bio-asn1-entrezgene=1.73=pl5321hdfd78af_3
  - perl-bio-coordinate=1.007001=pl5321hdfd78af_3
  - perl-bio-featureio=1.6.905=pl5321hdfd78af_4
  - perl-bio-samtools=1.43=pl5321h7132678_3
  - perl-bio-searchio-hmmer=1.7.3=pl5321hdfd78af_0
  - perl-bio-tools-phylo-paml=1.7.3=pl5321hdfd78af_3
  - perl-bio-tools-run-alignment-clustalw=1.7.4=pl5321hdfd78af_3
  - perl-bio-tools-run-alignment-tcoffee=1.7.4=pl5321hdfd78af_4
  - perl-bioperl=1.7.8=hdfd78af_1
  - perl-bioperl-core=1.7.8=pl5321hdfd78af_1
  - perl-bioperl-run=1.007003=pl5321hdfd78af_0
  - perl-business-isbn=3.007=pl5321hdfd78af_0
  - perl-business-isbn-data=20210112.006=pl5321hdfd78af_0
  - perl-capture-tiny=0.48=pl5321hdfd78af_2
  - perl-carp=1.38=pl5321hdfd78af_4
  - perl-class-data-inheritable=0.09=pl5321hdfd78af_0
  - perl-common-sense=3.75=pl5321hdfd78af_0
  - perl-compress-raw-bzip2=2.201=pl5321h87f3376_1
  - perl-compress-raw-zlib=2.105=pl5321h87f3376_0
  - perl-constant=1.33=pl5321hdfd78af_2
  - perl-data-dumper=2.183=pl5321hec16e2b_1
  - perl-db_file=1.858=pl5321h166bdaf_0
  - perl-devel-stacktrace=2.04=pl5321hdfd78af_1
  - perl-digest-hmac=1.04=pl5321hdfd78af_0
  - perl-digest-md5=2.58=pl5321hec16e2b_1
  - perl-encode=3.19=pl5321hec16e2b_1
  - perl-encode-locale=1.05=pl5321hdfd78af_7
  - perl-exception-class=1.45=pl5321hdfd78af_0
  - perl-exporter=5.72=pl5321hdfd78af_2
  - perl-exporter-tiny=1.002002=pl5321hdfd78af_0
  - perl-extutils-makemaker=7.64=pl5321hd8ed1ab_0
  - perl-file-listing=6.15=pl5321hdfd78af_0
  - perl-file-slurp-tiny=0.004=pl5321hdfd78af_2
  - perl-file-sort=1.01=pl5321hdfd78af_3
  - perl-file-spec=3.48_01=pl5321hdfd78af_2
  - perl-getopt-long=2.54=pl5321hdfd78af_0
  - perl-html-parser=3.79=pl5321h9f5acd7_0
  - perl-html-tagset=3.20=pl5321hdfd78af_4
  - perl-http-cookies=6.10=pl5321hdfd78af_0
  - perl-http-daemon=6.14=pl5321hdfd78af_0
  - perl-http-date=6.05=pl5321hdfd78af_0
  - perl-http-message=6.36=pl5321hdfd78af_0
  - perl-http-negotiate=6.01=pl5321hdfd78af_4
  - perl-io-compress=2.201=pl5321h87f3376_0
  - perl-io-html=1.004=pl5321hdfd78af_0
  - perl-io-socket-ssl=2.074=pl5321hdfd78af_0
  - perl-io-string=1.08=pl5321hdfd78af_4
  - perl-io-tty=1.16=pl5321hec16e2b_1
  - perl-io-zlib=1.11=pl5321hdfd78af_0
  - perl-ipc-run=20200505.0=pl5321hdfd78af_0
  - perl-json=4.10=pl5321hdfd78af_0
  - perl-json-xs=2.34=pl5321h9f5acd7_5
  - perl-libwww-perl=6.67=pl5321hdfd78af_0
  - perl-libxml-perl=0.08=pl5321hdfd78af_3
  - perl-list-moreutils=0.430=pl5321hdfd78af_0
  - perl-list-moreutils-xs=0.430=pl5321hec16e2b_1
  - perl-lwp-mediatypes=6.04=pl5321hdfd78af_1
  - perl-mime-base64=3.16=pl5321hec16e2b_2
  - perl-net-http=6.22=pl5321hdfd78af_0
  - perl-net-ssleay=1.92=pl5321hf14f497_1
  - perl-ntlm=1.09=pl5321hdfd78af_5
  - perl-parent=0.236=pl5321hdfd78af_2
  - perl-pathtools=3.75=pl5321hec16e2b_3
  - perl-scalar-list-utils=1.62=pl5321hec16e2b_1
  - perl-socket=2.027=pl5321hec16e2b_3
  - perl-sub-uplevel=0.2800=pl5321hec16e2b_4
  - perl-test-deep=1.130=pl5321hdfd78af_0
  - perl-test-differences=0.69=pl5321hdfd78af_0
  - perl-test-exception=0.43=pl5321hdfd78af_3
  - perl-test-most=0.38=pl5321hdfd78af_0
  - perl-test-warn=0.36=pl5321hdfd78af_2
  - perl-text-diff=1.45=pl5321hdfd78af_1
  - perl-threaded=5.32.1=hdfd78af_1
  - perl-time-local=1.30=pl5321hdfd78af_0
  - perl-timedate=2.33=pl5321hdfd78af_2
  - perl-tree-dag_node=1.32=pl5321hdfd78af_0
  - perl-try-tiny=0.31=pl5321hdfd78af_1
  - perl-types-serialiser=1.01=pl5321hdfd78af_0
  - perl-uri=5.12=pl5321hdfd78af_0
  - perl-url-encode=0.03=pl5321h9ee0642_0
  - perl-www-robotrules=6.02=pl5321hdfd78af_4
  - perl-xml-dom=1.46=pl5321hdfd78af_1
  - perl-xml-dom-xpath=0.14=pl5321hdfd78af_2
  - perl-xml-parser=2.44_01=pl5340hf309648_0
  - perl-xml-regexp=0.04=pl5321hdfd78af_3
  - perl-xml-xpathengine=0.14=pl5321hdfd78af_3
  - pip=19.3.1=py27_0
  - python=2.7.18=h42bf7aa_3
  - readline=8.2=h5eee18b_0
  - seqtk=1.3=h7132678_4
  - setuptools=44.0.0=py27_0
  - sqlite=3.40.0=h5082296_0
  - t_coffee=11.0.8=py27_2
  - tk=8.6.12=h1ccaba5_0
  - wget=1.20.3=ha35d2d1_1
  - wheel=0.37.1=pyhd3eb1b0_0
  - zlib=1.2.13=h166bdaf_4
prefix: /N/u/merajam/Carbonate/.conda/envs/subgenome