tsshmm/NAMESPACE at master · coregenomics/tsshmm · GitHub

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# Generated by roxygen2: do not edit by hand

export(TSSHMM)
export(coerce)
export(encode_obs)
export(tss)
exportClasses(TSSHMM)
exportMethods("parameters<-")
exportMethods(as.character)
exportMethods(dim)
exportMethods(parameters)
exportMethods(train)
exportMethods(viterbi)
import(GenomicRanges)
importFrom(BiocGenerics,normalize)
importFrom(BiocGenerics,relist)
importFrom(BiocGenerics,score)
importFrom(BiocGenerics,start)
importFrom(IRanges,IRanges)
importFrom(IRanges,IntegerList)
importFrom(IRanges,PartitioningByWidth)
importFrom(IRanges,RleList)
importFrom(IRanges,width)
importFrom(Rdpack,reprompt)
importFrom(S4Vectors,"mcols<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,List)
importFrom(S4Vectors,Pairs)
importFrom(S4Vectors,elementNROWS)
importFrom(S4Vectors,endoapply)
importFrom(S4Vectors,isSorted)
importFrom(S4Vectors,mcols)
importFrom(S4Vectors,mendoapply)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,runValue)
importFrom(S4Vectors,subjectHits)
importFrom(S4Vectors,to)
importFrom(futile.logger,flog.debug)
importFrom(futile.logger,flog.info)
importFrom(iterators,idiv)
importFrom(iterators,nextElem)
importFrom(methods,as)
importFrom(methods,callNextMethod)
importFrom(methods,coerce)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,validObject)
importFrom(stats,aggregate)
importFrom(stats,complete.cases)
importFrom(stats,na.pass)
useDynLib(tsshmm, .registration = TRUE)