When groups in single line actograms have different sizes, the opacity becomes different for based on the amount of animals that belong to that group. This is because the alpha value (see fct_R6_App_settings.R file) calculated by the setLD() function accounts for te number of animals in each group. this is to make it equal across different plots.
All calculated values are then saved in App_settings$LDcondition. Maybe in the plotting function (Annotate$plot_actogram() ) there should be a minimum alpha value to have in case the number of animals is too low in that panel. Is it possible to have different alpha values in different panels?
Image for reference, group belonging to cabinet 3 (top) has almost no shading
When groups in single line actograms have different sizes, the opacity becomes different for based on the amount of animals that belong to that group. This is because the alpha value (see fct_R6_App_settings.R file) calculated by the setLD() function accounts for te number of animals in each group. this is to make it equal across different plots.
All calculated values are then saved in App_settings$LDcondition. Maybe in the plotting function (Annotate$plot_actogram() ) there should be a minimum alpha value to have in case the number of animals is too low in that panel. Is it possible to have different alpha values in different panels?
Image for reference, group belonging to cabinet 3 (top) has almost no shading