1.27.1

Fixed

• Bugfix for AnnData file upload with 3D clustering (#312)

1.27.0

Added

• Integration of author DE into Ingest Pipeline (#310)
• Author DE manifest file and one-vs-rest support (#309)
• Verify and parse author DE files (#307)

Changed

• Bump requests from 2.28.2 to 2.31.0 (#308)

1.26.1

Changed

• Revise processed_expression extract to generate mtx fragment files (#305)

1.26.0

Added

• Extract processed expression matrix data from AnnData #303

Changed

• Refine mtx error messaging for transposed matrices #301
• Update SCP ingest to use AnnData 0.9.1 #302

1.25.1

Changed

• Upgrade to pymongo 3.12 to migitate breaking Python 3.10 change (#299)

Fixed

• Restore missing symlink to python in docker image (#299)

1.25.0

Added

• notebook for generating AnnData conventional metadata reference image (#295)
• implemented diffxpy tutorial for using pairwise tests for A vs B differential expression (#292)

Changed

• Update ingest image to Python 3.10.9, Ubuntu 20.04 (#294)
• Bump numpy fro 1.21.5 to 1.23.5 with Python update to resolve unsuccessful dependabot-generated upgrade attempt (#294)

Fixed

1.24.0

Added

• Extract metadata from h5ad and delocalize ingest-intermediate files to study bucket (#287)

Changed

• Test coverage for metadata extraction from h5ad files (#288)
• Enable local development via Docker compose (#290)

1.23.3

Fixed

• Correctly set filename when delocalizing extracted AnnData fragments (#283)
• Make "cell type (custom)" test data more correct (#284)
• Adding test coverage for AnnDataIngestor (#285)

1.23.2

Changed

• remove cell_type__custom dependency on cell_type (#281)

Fixed

• check truthiness of "extract cluster" (#280 )

1.23.1

Added

Changed

Fixed

• Allow cluster data extraction from AnnData file with only 2 dimensions (#278)