1.38.0

Added

• Enable pairwise DE in ingest pipeline (#374 )

1.37.1

Changed

• Use gene name instead of gene ID for DE from CELLxGENE AnnData #372

1.37.0

Added

• Secondary data check for Ensembl gene ID index (#370)

1.36.1

Fixed

• Coerce boolean metadata columns to categorical (#368)

1.36.0

Added

• Minify ontologies and keep them fresh, for fast metadata validation (#364)

Changed

• Harmonizing Mixpanel event properties (#366)

1.35.0

Added

• Extend differential expression jobs to AnnData files (#362)

1.34.0

Added

• Raw count cell name extraction for AnnData files (#359)

Changed

• Replacing vault with GSM for local development (#356)

Fixed

• Ensure correct TYPE for metadata in adata.obs from fragment files (#360)

1.33.0

Added

• Enable merging cell types from CAS into AnnData via CLI (#354)

Fixed

• Enable subsampling of AnnData files (#355)

1.32.0

Added

• Cell Annotation Service: proof of concept (#353)

1.31.0

Added

• Transform has_<modality> to boolean for BigQuery (#348)
• Canonicalize study publications, for better scientific context (#347)
• Generate Patchseq matrix data from exon + intron count files (#346)
• Generate ATAC viz data from example SnapATAC2 data (similar to Terra BICAN workshop) (#345)
• Generate matrix data from example pipelines-dev GEX AnnData file (#344)

Changed

• Bump pymongo from 3.12.0 to 4.6.3 (#343)
• Bump requests from 2.31.0 to 2.32.0 dependencies (#349)