diff --git a/datasets/PXD060322/PXD060322.sdrf.tsv b/datasets/PXD060322/PXD060322.sdrf.tsv
new file mode 100644
index 000000000..aeae0092f
--- /dev/null
+++ b/datasets/PXD060322/PXD060322.sdrf.tsv
@@ -0,0 +1,64 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	BSA_1_1_2_23684.d.zip	proteomic profiling by mass spectrometry	BSA_1_1_2_23684.d.zip	1	1	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	BSA_1_1_3_23685.d.zip	proteomic profiling by mass spectrometry	BSA_1_1_3_23685.d.zip	1	2	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	BSA_1_9_1_23686.d.zip	proteomic profiling by mass spectrometry	BSA_1_9_1_23686.d.zip	1	3	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	BSA_1_9_2_23687.d.zip	proteomic profiling by mass spectrometry	BSA_1_9_2_23687.d.zip	1	4	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	BSA_1_9_3_23688.d.zip	proteomic profiling by mass spectrometry	BSA_1_9_3_23688.d.zip	1	5	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	BSA_9_1_1_23689.d.zip	proteomic profiling by mass spectrometry	BSA_9_1_1_23689.d.zip	1	6	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	BSA_9_1_2_23690.d.zip	proteomic profiling by mass spectrometry	BSA_9_1_2_23690.d.zip	1	7	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	BSA_9_1_3_23691.d.zip	proteomic profiling by mass spectrometry	BSA_9_1_3_23691.d.zip	1	8	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	BSA_Ctrl_23696.d.zip	proteomic profiling by mass spectrometry	BSA_Ctrl_23696.d.zip	1	9	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_25AL_27814.d.zip	proteomic profiling by mass spectrometry	Bev_25AL_27814.d.zip	1	10	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_25AT_27812.d.zip	proteomic profiling by mass spectrometry	Bev_25AT_27812.d.zip	1	11	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_25AT_27817.d.zip	proteomic profiling by mass spectrometry	Bev_25AT_27817.d.zip	1	12	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_25A_Ctrl_27809.d.zip	proteomic profiling by mass spectrometry	Bev_25A_Ctrl_27809.d.zip	1	13	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_27809_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Bev_27809_MS_LCMSexport.txt	1	14	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_27811_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Bev_27811_MS_LCMSexport.txt	1	15	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_27812_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Bev_27812_MS_LCMSexport.txt	1	16	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_27813_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Bev_27813_MS_LCMSexport.txt	1	17	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_27814_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Bev_27814_MS_LCMSexport.txt	1	18	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_27816_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Bev_27816_MS_LCMSexport.txt	1	19	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_27817_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Bev_27817_MS_LCMSexport.txt	1	20	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_27818_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Bev_27818_MS_LCMSexport.txt	1	21	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_27819_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Bev_27819_MS_LCMSexport.txt	1	22	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_40AL_27815.d.zip	proteomic profiling by mass spectrometry	Bev_40AL_27815.d.zip	1	23	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_40AL_27816.d.zip	proteomic profiling by mass spectrometry	Bev_40AL_27816.d.zip	1	24	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_40AT_40AL_27813.d.zip	proteomic profiling by mass spectrometry	Bev_40AT_40AL_27813.d.zip	1	25	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_40A_27818.d.zip	proteomic profiling by mass spectrometry	Bev_40A_27818.d.zip	1	26	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_4AT_27808.d.zip	proteomic profiling by mass spectrometry	Bev_4AT_27808.d.zip	1	27	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_4A_27810.d.zip	proteomic profiling by mass spectrometry	Bev_4A_27810.d.zip	1	28	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Bev_xlinks_results.xlsx	proteomic profiling by mass spectrometry	Bev_xlinks_results.xlsx	1	29	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	HCA_DSPUC12_C13_ratio_1_1_B_25362.d.zip	proteomic profiling by mass spectrometry	HCA_DSPUC12_C13_ratio_1_1_B_25362.d.zip	1	30	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	HCA_DSPUC12_C13_ratio_1_1_C_25363.d.zip	proteomic profiling by mass spectrometry	HCA_DSPUC12_C13_ratio_1_1_C_25363.d.zip	1	31	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	HCA_DSPUC12_C13_ratio_9_1_B_25370.d.zip	proteomic profiling by mass spectrometry	HCA_DSPUC12_C13_ratio_9_1_B_25370.d.zip	1	32	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	HCA_DSPUC12_C13_ratio_9_1_C_25371.d.zip	proteomic profiling by mass spectrometry	HCA_DSPUC12_C13_ratio_9_1_C_25371.d.zip	1	33	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_25AL_27831.d.zip	proteomic profiling by mass spectrometry	Her_25AL_27831.d.zip	1	34	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_25AT_25AL_27824.d.zip	proteomic profiling by mass spectrometry	Her_25AT_25AL_27824.d.zip	1	35	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_25AT_27829.d.zip	proteomic profiling by mass spectrometry	Her_25AT_27829.d.zip	1	36	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_27820_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Her_27820_MS_LCMSexport.txt	1	37	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_27823_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Her_27823_MS_LCMSexport.txt	1	38	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_27824_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Her_27824_MS_LCMSexport.txt	1	39	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_27825_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Her_27825_MS_LCMSexport.txt	1	40	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_27826_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Her_27826_MS_LCMSexport.txt	1	41	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_27827_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Her_27827_MS_LCMSexport.txt	1	42	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_27829_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Her_27829_MS_LCMSexport.txt	1	43	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_27830_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Her_27830_MS_LCMSexport.txt	1	44	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_27831_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Her_27831_MS_LCMSexport.txt	1	45	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_40AL_27827.d.zip	proteomic profiling by mass spectrometry	Her_40AL_27827.d.zip	1	46	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_40AL_27828.d.zip	proteomic profiling by mass spectrometry	Her_40AL_27828.d.zip	1	47	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_40AT_27830.d.zip	proteomic profiling by mass spectrometry	Her_40AT_27830.d.zip	1	48	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_40AT_40AL_27825.d.zip	proteomic profiling by mass spectrometry	Her_40AT_40AL_27825.d.zip	1	49	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_40A_Ctrl_27822.d.zip	proteomic profiling by mass spectrometry	Her_40A_Ctrl_27822.d.zip	1	50	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_4AT_27823.d.zip	proteomic profiling by mass spectrometry	Her_4AT_27823.d.zip	1	51	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_4A_27820.d.zip	proteomic profiling by mass spectrometry	Her_4A_27820.d.zip	1	52	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Her_4A_27821.d.zip	proteomic profiling by mass spectrometry	Her_4A_27821.d.zip	1	53	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Myo_Apo_DSPU_DSPUx_25072_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Myo_Apo_DSPU_DSPUx_25072_MS_LCMSexport.txt	1	54	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Myo_Apo_DSPU_Holo_DSPUx_1_25073_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Myo_Apo_DSPU_Holo_DSPUx_1_25073_MS_LCMSexport.txt	1	55	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Myo_Apo_DSPU_Holo_DSPUx_2_25074_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Myo_Apo_DSPU_Holo_DSPUx_2_25074_MS_LCMSexport.txt	1	56	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Myo_Apo_DSPU_Holo_DSPUx_3_25075.d.zip	proteomic profiling by mass spectrometry	Myo_Apo_DSPU_Holo_DSPUx_3_25075.d.zip	1	57	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Myo_Apo_DSPU_Holo_DSPUx_3_25075_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Myo_Apo_DSPU_Holo_DSPUx_3_25075_MS_LCMSexport.txt	1	58	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Myo_Apo_DSPUx_Holo_DSPU_1_25077_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Myo_Apo_DSPUx_Holo_DSPU_1_25077_MS_LCMSexport.txt	1	59	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Myo_Apo_DSPUx_Holo_DSPU_2_25078.d.zip	proteomic profiling by mass spectrometry	Myo_Apo_DSPUx_Holo_DSPU_2_25078.d.zip	1	60	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Myo_Apo_DSPUx_Holo_DSPU_2_25078_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Myo_Apo_DSPUx_Holo_DSPU_2_25078_MS_LCMSexport.txt	1	61	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Myo_Apo_DSPUx_Holo_DSPU_3_25079.d.zip	proteomic profiling by mass spectrometry	Myo_Apo_DSPUx_Holo_DSPU_3_25079.d.zip	1	62	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD060322-sample	equus caballus	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Myo_Holo_DSPU_DSPUx_25080_MS_LCMSexport.txt	proteomic profiling by mass spectrometry	Myo_Holo_DSPU_DSPUx_25080_MS_LCMSexport.txt	1	63	AC=MS:1002038;NT=label free sample	NT=Bruker Daltonics solarix series;AC=MS:1001548	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
diff --git a/datasets/PXD060638/PXD060638.sdrf.tsv b/datasets/PXD060638/PXD060638.sdrf.tsv
new file mode 100644
index 000000000..68a99b172
--- /dev/null
+++ b/datasets/PXD060638/PXD060638.sdrf.tsv
@@ -0,0 +1,30 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[developmental stage]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Bin1_PhosphoResults_InVivo.sky.zip	proteomic profiling by mass spectrometry	Bin1_PhosphoResults_InVivo.sky.zip	1	1	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Bin1interactome_InVivo_Single_Peptide_Hits.sky.zip	proteomic profiling by mass spectrometry	Bin1interactome_InVivo_Single_Peptide_Hits.sky.zip	1	2	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_F_Bin1_1_DIAod_90m_5th_4ul_Slot1-32_5-16-2023_5885.d.zip	proteomic profiling by mass spectrometry	GT_JM_F_Bin1_1_DIAod_90m_5th_4ul_Slot1-32_5-16-2023_5885.d.zip	1	3	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_F_Bin1_2_DIAod_90m_5th_3pt3ul_Slot1-33_5-17-2023_5887.d.zip	proteomic profiling by mass spectrometry	GT_JM_F_Bin1_2_DIAod_90m_5th_3pt3ul_Slot1-33_5-17-2023_5887.d.zip	1	4	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_F_Bin1_3_DIAod_90m_5th_3pt2ul_Slot1-34_5-17-2023_5889.d.zip	proteomic profiling by mass spectrometry	GT_JM_F_Bin1_3_DIAod_90m_5th_3pt2ul_Slot1-34_5-17-2023_5889.d.zip	1	5	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_F_Bin1_4_DIAod_90m_5th_3pt2ul_Slot1-35_5-17-2023_5891.d.zip	proteomic profiling by mass spectrometry	GT_JM_F_Bin1_4_DIAod_90m_5th_3pt2ul_Slot1-35_5-17-2023_5891.d.zip	1	6	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_F_Bin1_5_DIAod_90m_5th_2pt7ul_Slot1-36_5-17-2023_5893.d.zip	proteomic profiling by mass spectrometry	GT_JM_F_Bin1_5_DIAod_90m_5th_2pt7ul_Slot1-36_5-17-2023_5893.d.zip	1	7	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_F_Cyto_1_DIAod_90m_5th_5pt1ul_Slot1-28_5-16-2023_5877.d.zip	proteomic profiling by mass spectrometry	GT_JM_F_Cyto_1_DIAod_90m_5th_5pt1ul_Slot1-28_5-16-2023_5877.d.zip	1	8	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_F_Cyto_2_DIAod_90m_5th_4pt2ul_Slot1-29_5-16-2023_5879.d.zip	proteomic profiling by mass spectrometry	GT_JM_F_Cyto_2_DIAod_90m_5th_4pt2ul_Slot1-29_5-16-2023_5879.d.zip	1	9	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_F_Cyto_3_DIAod_90m_5th_5ul_Slot1-30_5-16-2023_5881.d.zip	proteomic profiling by mass spectrometry	GT_JM_F_Cyto_3_DIAod_90m_5th_5ul_Slot1-30_5-16-2023_5881.d.zip	1	10	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_F_Cyto_4_DIAod_90m_5th_4pt2ul_Slot1-31_5-16-2023_5883.d.zip	proteomic profiling by mass spectrometry	GT_JM_F_Cyto_4_DIAod_90m_5th_4pt2ul_Slot1-31_5-16-2023_5883.d.zip	1	11	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_M_Bin1_1_DIAod_90m_5th_4pt3ul_Slot1-19_5-14-2023_5864.d.zip	proteomic profiling by mass spectrometry	GT_JM_M_Bin1_1_DIAod_90m_5th_4pt3ul_Slot1-19_5-14-2023_5864.d.zip	1	12	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_M_Bin1_2_DIAod_90m_5th_3pt9ul_Slot1-20_5-15-2023_5866.d.zip	proteomic profiling by mass spectrometry	GT_JM_M_Bin1_2_DIAod_90m_5th_3pt9ul_Slot1-20_5-15-2023_5866.d.zip	1	13	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_M_Bin1_3_DIAod_90m_5th_4pt8ul_Slot1-21_5-15-2023_5868.d.zip	proteomic profiling by mass spectrometry	GT_JM_M_Bin1_3_DIAod_90m_5th_4pt8ul_Slot1-21_5-15-2023_5868.d.zip	1	14	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_M_Bin1_4_DIAod_90m_5th_6ul_Slot1-22_5-15-2023_5870.d.zip	proteomic profiling by mass spectrometry	GT_JM_M_Bin1_4_DIAod_90m_5th_6ul_Slot1-22_5-15-2023_5870.d.zip	1	15	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_M_Bin1_5_DIAod_90m_5th_3pt4ul_Slot1-23_5-15-2023_5872.d.zip	proteomic profiling by mass spectrometry	GT_JM_M_Bin1_5_DIAod_90m_5th_3pt4ul_Slot1-23_5-15-2023_5872.d.zip	1	16	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_M_Bin1_6_DIAod_90m_5th_4pt1ul_Slot1-24_5-15-2023_5874.d.zip	proteomic profiling by mass spectrometry	GT_JM_M_Bin1_6_DIAod_90m_5th_4pt1ul_Slot1-24_5-15-2023_5874.d.zip	1	17	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_M_Cyto_1_DIAod_90m_5th_6pt3ul_Slot1-10_5-13-2023_5853.d.zip	proteomic profiling by mass spectrometry	GT_JM_M_Cyto_1_DIAod_90m_5th_6pt3ul_Slot1-10_5-13-2023_5853.d.zip	1	18	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_M_Cyto_2_DIAod_90m_5th_3pt8ul_Slot1-11_5-13-2023_5855.d.zip	proteomic profiling by mass spectrometry	GT_JM_M_Cyto_2_DIAod_90m_5th_3pt8ul_Slot1-11_5-13-2023_5855.d.zip	1	19	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_M_Cyto_3_DIAod_90m_stock_2ul_Slot1-39_5-14-2023_5858.d.zip	proteomic profiling by mass spectrometry	GT_JM_M_Cyto_3_DIAod_90m_stock_2ul_Slot1-39_5-14-2023_5858.d.zip	1	20	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_M_Cyto_4_DIAod_90m_5th_3pt8ul_Slot1-13_5-14-2023_5860.d.zip	proteomic profiling by mass spectrometry	GT_JM_M_Cyto_4_DIAod_90m_5th_3pt8ul_Slot1-13_5-14-2023_5860.d.zip	1	21	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GT_JM_M_Cyto_5_DIAod_90m_5th_4pt4ul_Slot1-14_5-14-2023_5862.d.zip	proteomic profiling by mass spectrometry	GT_JM_M_Cyto_5_DIAod_90m_5th_4pt4ul_Slot1-14_5-14-2023_5862.d.zip	1	22	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	JM_Bin1_1_90m_DIA_stock_1ul_Slot1-21_3-17-2022_2823.d.zip	proteomic profiling by mass spectrometry	JM_Bin1_1_90m_DIA_stock_1ul_Slot1-21_3-17-2022_2823.d.zip	1	23	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	JM_Bin1_2_90m_DIA_stock_1ul_Slot1-24_3-18-2022_2829.d.zip	proteomic profiling by mass spectrometry	JM_Bin1_2_90m_DIA_stock_1ul_Slot1-24_3-18-2022_2829.d.zip	1	24	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	JM_Bin1_3_90m_DIA_stock_1ul_Slot1-27_3-19-2022_2835.d.zip	proteomic profiling by mass spectrometry	JM_Bin1_3_90m_DIA_stock_1ul_Slot1-27_3-19-2022_2835.d.zip	1	25	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	JM_Cyto_1_90m_DIA_stock_1ul_Slot1-19_3-17-2022_2819.d.zip	proteomic profiling by mass spectrometry	JM_Cyto_1_90m_DIA_stock_1ul_Slot1-19_3-17-2022_2819.d.zip	1	26	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	JM_Cyto_2_90m_DIA_stock_1ul_Slot1-22_3-18-2022_2825.d.zip	proteomic profiling by mass spectrometry	JM_Cyto_2_90m_DIA_stock_1ul_Slot1-22_3-18-2022_2825.d.zip	1	27	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	JM_Cyto_3_90m_DIA_stock_1ul_Slot1-25_3-18-2022_2831.d.zip	proteomic profiling by mass spectrometry	JM_Cyto_3_90m_DIA_stock_1ul_Slot1-25_3-18-2022_2831.d.zip	1	28	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD060638-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	N2a_Single_Peptide_Hits.sky.zip	proteomic profiling by mass spectrometry	N2a_Single_Peptide_Hits.sky.zip	1	29	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
diff --git a/datasets/PXD060825/PXD060825.sdrf.tsv b/datasets/PXD060825/PXD060825.sdrf.tsv
new file mode 100644
index 000000000..9c2bed075
--- /dev/null
+++ b/datasets/PXD060825/PXD060825.sdrf.tsv
@@ -0,0 +1,19 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD060825-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	F1_20210121_BB_EB_HA_52B2_1	proteomic profiling by mass spectrometry	F1_20210121_BB_EB_HA_52B2_1.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BioID;AC=XLMOD:02250	not available	not available	Tris-HCl	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD060825-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	F1_20210121_BB_EB_HA_52B2_2	proteomic profiling by mass spectrometry	F1_20210121_BB_EB_HA_52B2_2.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BioID;AC=XLMOD:02250	not available	not available	Tris-HCl	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD060825-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	F1_20210121_BB_EB_HA_52B2_3	proteomic profiling by mass spectrometry	F1_20210121_BB_EB_HA_52B2_3.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BioID;AC=XLMOD:02250	not available	not available	Tris-HCl	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD060825-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	F1_20210121_BB_EB_HA_HG_1	proteomic profiling by mass spectrometry	F1_20210121_BB_EB_HA_HG_1.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BioID;AC=XLMOD:02250	not available	not available	Tris-HCl	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD060825-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	F1_20210121_BB_EB_HA_HG_2	proteomic profiling by mass spectrometry	F1_20210121_BB_EB_HA_HG_2.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BioID;AC=XLMOD:02250	not available	not available	Tris-HCl	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD060825-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	F1_20210121_BB_EB_HA_HG_3	proteomic profiling by mass spectrometry	F1_20210121_BB_EB_HA_HG_3.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BioID;AC=XLMOD:02250	not available	not available	Tris-HCl	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD060825-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	F1_20210122_BB_EB_52B2_7	proteomic profiling by mass spectrometry	F1_20210122_BB_EB_52B2_7.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BioID;AC=XLMOD:02250	not available	not available	Tris-HCl	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD060825-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	F1_20210122_BB_EB_52B2_8	proteomic profiling by mass spectrometry	F1_20210122_BB_EB_52B2_8.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BioID;AC=XLMOD:02250	not available	not available	Tris-HCl	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD060825-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	F1_20210122_BB_EB_52B2_9	proteomic profiling by mass spectrometry	F1_20210122_BB_EB_52B2_9.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BioID;AC=XLMOD:02250	not available	not available	Tris-HCl	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD060825-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	F1_20210122_BB_EB_NLSB2_10	proteomic profiling by mass spectrometry	F1_20210122_BB_EB_NLSB2_10.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BioID;AC=XLMOD:02250	not available	not available	Tris-HCl	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD060825-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	F1_20210122_BB_EB_NLSB2_11	proteomic profiling by mass spectrometry	F1_20210122_BB_EB_NLSB2_11.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BioID;AC=XLMOD:02250	not available	not available	Tris-HCl	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD060825-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	F1_20210122_BB_EB_NLSB2_12	proteomic profiling by mass spectrometry	F1_20210122_BB_EB_NLSB2_12.raw	1	12	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BioID;AC=XLMOD:02250	not available	not available	Tris-HCl	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD060825-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	L1_20230512_BB_UL52_Borst_1to20	proteomic profiling by mass spectrometry	L1_20230512_BB_UL52_Borst_1to20.raw	1	13	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BioID;AC=XLMOD:02250	not available	not available	Tris-HCl	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD060825-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	L1_20230512_BB_UL52_Borst_1to20_2	proteomic profiling by mass spectrometry	L1_20230512_BB_UL52_Borst_1to20_2.raw	1	14	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BioID;AC=XLMOD:02250	not available	not available	Tris-HCl	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD060825-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	L1_20230512_BB_UL52_Borst_mes1	proteomic profiling by mass spectrometry	L1_20230512_BB_UL52_Borst_mes1.raw	1	15	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BioID;AC=XLMOD:02250	not available	not available	Tris-HCl	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD060825-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	L1_20230512_BB_UL52_Borst_mes1_2	proteomic profiling by mass spectrometry	L1_20230512_BB_UL52_Borst_mes1_2.raw	1	16	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BioID;AC=XLMOD:02250	not available	not available	Tris-HCl	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD060825-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	L1_20230512_BB_UL52_Borst_mes1_3	proteomic profiling by mass spectrometry	L1_20230512_BB_UL52_Borst_mes1_3.raw	1	17	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BioID;AC=XLMOD:02250	not available	not available	Tris-HCl	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD060825-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	L1_20230512_BB_UL52_Borst_mes2	proteomic profiling by mass spectrometry	L1_20230512_BB_UL52_Borst_mes2.raw	1	18	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BioID;AC=XLMOD:02250	not available	not available	Tris-HCl	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD061125/PXD061125.sdrf.tsv b/datasets/PXD061125/PXD061125.sdrf.tsv
new file mode 100644
index 000000000..f510504e9
--- /dev/null
+++ b/datasets/PXD061125/PXD061125.sdrf.tsv
@@ -0,0 +1,32 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[developmental stage]	characteristics[strain or breed]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	1-0400-0800	proteomic profiling by mass spectrometry	1-0400-0800.raw	1	1	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	1-0700-1100	proteomic profiling by mass spectrometry	1-0700-1100.raw	1	2	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	1-1000-1400	proteomic profiling by mass spectrometry	1-1000-1400.raw	1	3	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	1SW-0400-0800	proteomic profiling by mass spectrometry	1SW-0400-0800.raw	1	4	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	1SW-0700-1100	proteomic profiling by mass spectrometry	1SW-0700-1100.raw	1	5	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	1SW-1000-1400	proteomic profiling by mass spectrometry	1SW-1000-1400.raw	1	6	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	1SW_ID.xlsx	proteomic profiling by mass spectrometry	1SW_ID.xlsx	1	7	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	1SW_Quant.xlsx	proteomic profiling by mass spectrometry	1SW_Quant.xlsx	1	8	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	1_ID.xlsx	proteomic profiling by mass spectrometry	1_ID.xlsx	1	9	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	1_Quant.xlsx	proteomic profiling by mass spectrometry	1_Quant.xlsx	1	10	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	2-0400-0800	proteomic profiling by mass spectrometry	2-0400-0800.raw	1	11	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	2-0700-1100	proteomic profiling by mass spectrometry	2-0700-1100.raw	1	12	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	2-1000-1400	proteomic profiling by mass spectrometry	2-1000-1400.raw	1	13	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	2SW-0400-0800	proteomic profiling by mass spectrometry	2SW-0400-0800.raw	1	14	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	2SW-0700-1100	proteomic profiling by mass spectrometry	2SW-0700-1100.raw	1	15	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	2SW-1000-1400	proteomic profiling by mass spectrometry	2SW-1000-1400.raw	1	16	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	2SW_ID.xlsx	proteomic profiling by mass spectrometry	2SW_ID.xlsx	1	17	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	2SW_Quant.xlsx	proteomic profiling by mass spectrometry	2SW_Quant.xlsx	1	18	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	2_ID.xlsx	proteomic profiling by mass spectrometry	2_ID.xlsx	1	19	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	2_Quant.xlsx	proteomic profiling by mass spectrometry	2_Quant.xlsx	1	20	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	3-0400-0800	proteomic profiling by mass spectrometry	3-0400-0800.raw	1	21	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	3-0700-1100	proteomic profiling by mass spectrometry	3-0700-1100.raw	1	22	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	3-1000-1400	proteomic profiling by mass spectrometry	3-1000-1400.raw	1	23	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	3SW-0400-0800	proteomic profiling by mass spectrometry	3SW-0400-0800.raw	1	24	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	3SW-0700-1100	proteomic profiling by mass spectrometry	3SW-0700-1100.raw	1	25	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	3SW-1000-1400	proteomic profiling by mass spectrometry	3SW-1000-1400.raw	1	26	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	3SW_ID.xlsx	proteomic profiling by mass spectrometry	3SW_ID.xlsx	1	27	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	3SW_Quant.xlsx	proteomic profiling by mass spectrometry	3SW_Quant.xlsx	1	28	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	3_ID.xlsx	proteomic profiling by mass spectrometry	3_ID.xlsx	1	29	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	3_Quant.xlsx	proteomic profiling by mass spectrometry	3_Quant.xlsx	1	30	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061125-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	30 Å	not available	not available	Imh1_FASTA.txt	proteomic profiling by mass spectrometry	Imh1_FASTA.txt	1	31	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Elite;AC=MS:1001910	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=BS3;AC=XLMOD:02000	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
diff --git a/datasets/PXD061317/PXD061317.sdrf.tsv b/datasets/PXD061317/PXD061317.sdrf.tsv
new file mode 100644
index 000000000..fb707be24
--- /dev/null
+++ b/datasets/PXD061317/PXD061317.sdrf.tsv
@@ -0,0 +1,15 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[developmental stage]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD061317-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	241203_DC2p4_membrane_PD_DMSO-post_Slot2-12_1_8506.d.zip	proteomic profiling by mass spectrometry	241203_DC2p4_membrane_PD_DMSO-post_Slot2-12_1_8506.d.zip	1	1	AC=MS:1002038;NT=label free sample	NT=timsTOF HT;AC=MS:1003404	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD061317-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	241203_DC2p4_membrane_PD_DMSO-post_Slot2-12_1_8507.d.zip	proteomic profiling by mass spectrometry	241203_DC2p4_membrane_PD_DMSO-post_Slot2-12_1_8507.d.zip	1	2	AC=MS:1002038;NT=label free sample	NT=timsTOF HT;AC=MS:1003404	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD061317-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	241203_DC2p4_membrane_PD_DMSO-post_Slot2-12_1_8508.d.zip	proteomic profiling by mass spectrometry	241203_DC2p4_membrane_PD_DMSO-post_Slot2-12_1_8508.d.zip	1	3	AC=MS:1002038;NT=label free sample	NT=timsTOF HT;AC=MS:1003404	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD061317-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	241203_DC2p4_membrane_PD_NHS-biotin-post_Slot2-13_1_8503.d.zip	proteomic profiling by mass spectrometry	241203_DC2p4_membrane_PD_NHS-biotin-post_Slot2-13_1_8503.d.zip	1	4	AC=MS:1002038;NT=label free sample	NT=timsTOF HT;AC=MS:1003404	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD061317-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	241203_DC2p4_membrane_PD_NHS-biotin-post_Slot2-13_1_8504.d.zip	proteomic profiling by mass spectrometry	241203_DC2p4_membrane_PD_NHS-biotin-post_Slot2-13_1_8504.d.zip	1	5	AC=MS:1002038;NT=label free sample	NT=timsTOF HT;AC=MS:1003404	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD061317-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	241203_DC2p4_membrane_PD_NHS-biotin-post_Slot2-13_1_8505.d.zip	proteomic profiling by mass spectrometry	241203_DC2p4_membrane_PD_NHS-biotin-post_Slot2-13_1_8505.d.zip	1	6	AC=MS:1002038;NT=label free sample	NT=timsTOF HT;AC=MS:1003404	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD061317-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	241203_DC2p4_membrane_global_CMW_Slot2-15_1_8516.d.zip	proteomic profiling by mass spectrometry	241203_DC2p4_membrane_global_CMW_Slot2-15_1_8516.d.zip	1	7	AC=MS:1002038;NT=label free sample	NT=timsTOF HT;AC=MS:1003404	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD061317-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	241203_DC2p4_membrane_global_CMW_Slot2-15_1_8518.d.zip	proteomic profiling by mass spectrometry	241203_DC2p4_membrane_global_CMW_Slot2-15_1_8518.d.zip	1	8	AC=MS:1002038;NT=label free sample	NT=timsTOF HT;AC=MS:1003404	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD061317-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	241203_DC2p4_membrane_global_CMW_Slot2-15_1_8520.d.zip	proteomic profiling by mass spectrometry	241203_DC2p4_membrane_global_CMW_Slot2-15_1_8520.d.zip	1	9	AC=MS:1002038;NT=label free sample	NT=timsTOF HT;AC=MS:1003404	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD061317-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	combined.prot.xml	proteomic profiling by mass spectrometry	combined.prot.xml	1	10	AC=MS:1002038;NT=label free sample	NT=timsTOF HT;AC=MS:1003404	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD061317-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	combined_peptide.tsv	proteomic profiling by mass spectrometry	combined_peptide.tsv	1	11	AC=MS:1002038;NT=label free sample	NT=timsTOF HT;AC=MS:1003404	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD061317-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	combined_protein.tsv	proteomic profiling by mass spectrometry	combined_protein.tsv	1	12	AC=MS:1002038;NT=label free sample	NT=timsTOF HT;AC=MS:1003404	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD061317-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	fragger.params	proteomic profiling by mass spectrometry	fragger.params	1	13	AC=MS:1002038;NT=label free sample	NT=timsTOF HT;AC=MS:1003404	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD061317-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	fragpipe.workflow	proteomic profiling by mass spectrometry	fragpipe.workflow	1	14	AC=MS:1002038;NT=label free sample	NT=timsTOF HT;AC=MS:1003404	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
diff --git a/datasets/PXD061540/PXD061540.sdrf.tsv b/datasets/PXD061540/PXD061540.sdrf.tsv
new file mode 100644
index 000000000..2281a53e6
--- /dev/null
+++ b/datasets/PXD061540/PXD061540.sdrf.tsv
@@ -0,0 +1,28 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	10_293T_TID_GFP_4h_Replicate1.d.zip	proteomic profiling by mass spectrometry	10_293T_TID_GFP_4h_Replicate1.d.zip	1	1	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	11_293T_TID_GFP_4h_Replicate2.d.zip	proteomic profiling by mass spectrometry	11_293T_TID_GFP_4h_Replicate2.d.zip	1	2	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	12_293T_TID_GFP_4h_Replicate3.d.zip	proteomic profiling by mass spectrometry	12_293T_TID_GFP_4h_Replicate3.d.zip	1	3	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	13_293T_TID_GFP_6h_Replicate1.d.zip	proteomic profiling by mass spectrometry	13_293T_TID_GFP_6h_Replicate1.d.zip	1	4	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	14_293T_TID_GFP_6h_Replicate2.d.zip	proteomic profiling by mass spectrometry	14_293T_TID_GFP_6h_Replicate2.d.zip	1	5	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	15_293T_TID_GFP_6h_Replicate3.d.zip	proteomic profiling by mass spectrometry	15_293T_TID_GFP_6h_Replicate3.d.zip	1	6	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	16_293T_TID_GFP_24h_Replicate1.d.zip	proteomic profiling by mass spectrometry	16_293T_TID_GFP_24h_Replicate1.d.zip	1	7	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	17_293T_TID_GFP_24h_Replicate2.d.zip	proteomic profiling by mass spectrometry	17_293T_TID_GFP_24h_Replicate2.d.zip	1	8	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	18_293T_TID_GFP_24h_Replicate3.d.zip	proteomic profiling by mass spectrometry	18_293T_TID_GFP_24h_Replicate3.d.zip	1	9	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	19_293T_TID_HUWE1_WT_24h_Replicate1.d.zip	proteomic profiling by mass spectrometry	19_293T_TID_HUWE1_WT_24h_Replicate1.d.zip	1	10	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	1_293T_TID_GFP_1h_Replicate1.d.zip	proteomic profiling by mass spectrometry	1_293T_TID_GFP_1h_Replicate1.d.zip	1	11	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20_293T_TID_HUWE1_WT_24h_Replicate2.d.zip	proteomic profiling by mass spectrometry	20_293T_TID_HUWE1_WT_24h_Replicate2.d.zip	1	12	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	21_293T_TID_HUWE1_WT_24h_Replicate3.d.zip	proteomic profiling by mass spectrometry	21_293T_TID_HUWE1_WT_24h_Replicate3.d.zip	1	13	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	2_293T_TID_GFP_1h_Replicate2.d.zip	proteomic profiling by mass spectrometry	2_293T_TID_GFP_1h_Replicate2.d.zip	1	14	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	3_293T_TID_GFP_1h_Replicate3.d.zip	proteomic profiling by mass spectrometry	3_293T_TID_GFP_1h_Replicate3.d.zip	1	15	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	4_293T_TID_GFP_2h_Replicate1.d.zip	proteomic profiling by mass spectrometry	4_293T_TID_GFP_2h_Replicate1.d.zip	1	16	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	5_293T_TID_GFP_2h_Replicate2.d.zip	proteomic profiling by mass spectrometry	5_293T_TID_GFP_2h_Replicate2.d.zip	1	17	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	6_293T_TID_GFP_2h_Replicate3.d.zip	proteomic profiling by mass spectrometry	6_293T_TID_GFP_2h_Replicate3.d.zip	1	18	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	7_293T_TID_GFP_3h_Replicate1.d.zip	proteomic profiling by mass spectrometry	7_293T_TID_GFP_3h_Replicate1.d.zip	1	19	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	8_293T_TID_GFP_3h_Replicate2.d.zip	proteomic profiling by mass spectrometry	8_293T_TID_GFP_3h_Replicate2.d.zip	1	20	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	9_293T_TID_GFP_3h_Replicate3.d.zip	proteomic profiling by mass spectrometry	9_293T_TID_GFP_3h_Replicate3.d.zip	1	21	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset6.pg_matrix_norm.tsv	proteomic profiling by mass spectrometry	report_v192_dataset6.pg_matrix_norm.tsv	1	22	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset6.pg_matrix_unnorm.tsv	proteomic profiling by mass spectrometry	report_v192_dataset6.pg_matrix_unnorm.tsv	1	23	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset6_skyline.blib	proteomic profiling by mass spectrometry	report_v192_dataset6_skyline.blib	1	24	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset6_skyline.redundant.blib	proteomic profiling by mass spectrometry	report_v192_dataset6_skyline.redundant.blib	1	25	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset6_skyline.sky	proteomic profiling by mass spectrometry	report_v192_dataset6_skyline.sky	1	26	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061540-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset6_skyline.skyd	proteomic profiling by mass spectrometry	report_v192_dataset6_skyline.skyd	1	27	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD061541/PXD061541.sdrf.tsv b/datasets/PXD061541/PXD061541.sdrf.tsv
new file mode 100644
index 000000000..cfd4f156e
--- /dev/null
+++ b/datasets/PXD061541/PXD061541.sdrf.tsv
@@ -0,0 +1,44 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	10_Lenti_TID_eGFP_Sorted3_Replicate1.d.zip	proteomic profiling by mass spectrometry	10_Lenti_TID_eGFP_Sorted3_Replicate1.d.zip	1	1	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	11_Lenti_TID_eGFP_Sorted3_Replicate2.d.zip	proteomic profiling by mass spectrometry	11_Lenti_TID_eGFP_Sorted3_Replicate2.d.zip	1	2	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	12_Lenti_TID_eGFP_Sorted3_Replicate3.d.zip	proteomic profiling by mass spectrometry	12_Lenti_TID_eGFP_Sorted3_Replicate3.d.zip	1	3	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	13_Lenti_TID_eGFP_Unsorted_Replicate1.d.zip	proteomic profiling by mass spectrometry	13_Lenti_TID_eGFP_Unsorted_Replicate1.d.zip	1	4	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	14_Lenti_TID_eGFP_Unsorted_Replicate2.d.zip	proteomic profiling by mass spectrometry	14_Lenti_TID_eGFP_Unsorted_Replicate2.d.zip	1	5	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	15_Lenti_TID_eGFP_Unsorted_Replicate3.d.zip	proteomic profiling by mass spectrometry	15_Lenti_TID_eGFP_Unsorted_Replicate3.d.zip	1	6	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	16_FlpIn_TID_eGFP_Replicate1.d.zip	proteomic profiling by mass spectrometry	16_FlpIn_TID_eGFP_Replicate1.d.zip	1	7	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	17_FlpIn_TID_eGFP_Replicate2.d.zip	proteomic profiling by mass spectrometry	17_FlpIn_TID_eGFP_Replicate2.d.zip	1	8	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	18_FlpIn_TID_eGFP_Replicate3.d.zip	proteomic profiling by mass spectrometry	18_FlpIn_TID_eGFP_Replicate3.d.zip	1	9	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	19_FlpIn_TID_RNF10_Nobiotin_Replicate1.d.zip	proteomic profiling by mass spectrometry	19_FlpIn_TID_RNF10_Nobiotin_Replicate1.d.zip	1	10	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	1_293FlpIn_WT_NoTID_Replicate1.d.zip	proteomic profiling by mass spectrometry	1_293FlpIn_WT_NoTID_Replicate1.d.zip	1	11	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20_FlpIn_TID_RNF10_Nobiotin_Replicate2.d.zip	proteomic profiling by mass spectrometry	20_FlpIn_TID_RNF10_Nobiotin_Replicate2.d.zip	1	12	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	21_FlpIn_TID_RNF10_Nobiotin_Replicate3.d.zip	proteomic profiling by mass spectrometry	21_FlpIn_TID_RNF10_Nobiotin_Replicate3.d.zip	1	13	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	22_FlpIn_TID_RNF10_Biotin_Replicate1.d.zip	proteomic profiling by mass spectrometry	22_FlpIn_TID_RNF10_Biotin_Replicate1.d.zip	1	14	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	23_FlpIn_TID_RNF10_Biotin_Replicate2.d.zip	proteomic profiling by mass spectrometry	23_FlpIn_TID_RNF10_Biotin_Replicate2.d.zip	1	15	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	24_FlpIn_TID_RNF10_Biotin_Replicate3.d.zip	proteomic profiling by mass spectrometry	24_FlpIn_TID_RNF10_Biotin_Replicate3.d.zip	1	16	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	25_Lenti_TID_RNF10_Replicate1.d.zip	proteomic profiling by mass spectrometry	25_Lenti_TID_RNF10_Replicate1.d.zip	1	17	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	26_Lenti_TID_RNF10_Replicate2.d.zip	proteomic profiling by mass spectrometry	26_Lenti_TID_RNF10_Replicate2.d.zip	1	18	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	27_Lenti_TID_RNF10_Replicate3.d.zip	proteomic profiling by mass spectrometry	27_Lenti_TID_RNF10_Replicate3.d.zip	1	19	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	28_TID_KI_C_free_Replicate1.d.zip	proteomic profiling by mass spectrometry	28_TID_KI_C_free_Replicate1.d.zip	1	20	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	29_TID_KI_C_free_Replicate2.d.zip	proteomic profiling by mass spectrometry	29_TID_KI_C_free_Replicate2.d.zip	1	21	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	2_293FlpIn_WT_NoTID_Replicate2.d.zip	proteomic profiling by mass spectrometry	2_293FlpIn_WT_NoTID_Replicate2.d.zip	1	22	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	30_TID_KI_C_free_Replicate3.d.zip	proteomic profiling by mass spectrometry	30_TID_KI_C_free_Replicate3.d.zip	1	23	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	31_N_TID_KI_RNF10_Replicate1.d.zip	proteomic profiling by mass spectrometry	31_N_TID_KI_RNF10_Replicate1.d.zip	1	24	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	32_N_TID_KI_RNF10_Replicate2.d.zip	proteomic profiling by mass spectrometry	32_N_TID_KI_RNF10_Replicate2.d.zip	1	25	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	33_N_TID_KI_RNF10_Replicate3.d.zip	proteomic profiling by mass spectrometry	33_N_TID_KI_RNF10_Replicate3.d.zip	1	26	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	3_293FlpIn_WT_NoTID_Replicate3.d.zip	proteomic profiling by mass spectrometry	3_293FlpIn_WT_NoTID_Replicate3.d.zip	1	27	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	4_Lenti_TID_eGFP_Sorted1_Replicate1.d.zip	proteomic profiling by mass spectrometry	4_Lenti_TID_eGFP_Sorted1_Replicate1.d.zip	1	28	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	5_Lenti_TID_eGFP_Sorted1_Replicate2.d.zip	proteomic profiling by mass spectrometry	5_Lenti_TID_eGFP_Sorted1_Replicate2.d.zip	1	29	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	6_Lenti_TID_eGFP_Sorted1_Replicate3.d.zip	proteomic profiling by mass spectrometry	6_Lenti_TID_eGFP_Sorted1_Replicate3.d.zip	1	30	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	7_Lenti_TID_eGFP_Sorted2_Replicate1.d.zip	proteomic profiling by mass spectrometry	7_Lenti_TID_eGFP_Sorted2_Replicate1.d.zip	1	31	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	8_Lenti_TID_eGFP_Sorted2_Replicate2.d.zip	proteomic profiling by mass spectrometry	8_Lenti_TID_eGFP_Sorted2_Replicate2.d.zip	1	32	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	9_Lenti_TID_eGFP_Sorted2_Replicate3.d.zip	proteomic profiling by mass spectrometry	9_Lenti_TID_eGFP_Sorted2_Replicate3.d.zip	1	33	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset1.pg_matrix_norm_MaxLFQ.tsv	proteomic profiling by mass spectrometry	report_v192_dataset1.pg_matrix_norm_MaxLFQ.tsv	1	34	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset1.pg_matrix_norm_RTnormPep_Sumpep.tsv	proteomic profiling by mass spectrometry	report_v192_dataset1.pg_matrix_norm_RTnormPep_Sumpep.tsv	1	35	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset1.pg_matrix_norm_Sumpep_normbytotal.tsv	proteomic profiling by mass spectrometry	report_v192_dataset1.pg_matrix_norm_Sumpep_normbytotal.tsv	1	36	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset1.pg_matrix_unnorm_Sumpep.tsv	proteomic profiling by mass spectrometry	report_v192_dataset1.pg_matrix_unnorm_Sumpep.tsv	1	37	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset1.pg_matrix_unnorm_Top1.tsv	proteomic profiling by mass spectrometry	report_v192_dataset1.pg_matrix_unnorm_Top1.tsv	1	38	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset1.pg_matrix_unnorm_xTop1.tsv	proteomic profiling by mass spectrometry	report_v192_dataset1.pg_matrix_unnorm_xTop1.tsv	1	39	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset1_skyline.blib	proteomic profiling by mass spectrometry	report_v192_dataset1_skyline.blib	1	40	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset1_skyline.redundant.blib	proteomic profiling by mass spectrometry	report_v192_dataset1_skyline.redundant.blib	1	41	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset1_skyline.sky	proteomic profiling by mass spectrometry	report_v192_dataset1_skyline.sky	1	42	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061541-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset1_skyline.skyd	proteomic profiling by mass spectrometry	report_v192_dataset1_skyline.skyd	1	43	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD061560/PXD061560.sdrf.tsv b/datasets/PXD061560/PXD061560.sdrf.tsv
new file mode 100644
index 000000000..40c0a0a3f
--- /dev/null
+++ b/datasets/PXD061560/PXD061560.sdrf.tsv
@@ -0,0 +1,36 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	10_Lenti_TID_eGFP_Sorted3_Replicate1.d.zip	proteomic profiling by mass spectrometry	10_Lenti_TID_eGFP_Sorted3_Replicate1.d.zip	1	1	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	11_Lenti_TID_eGFP_Sorted3_Replicate2.d.zip	proteomic profiling by mass spectrometry	11_Lenti_TID_eGFP_Sorted3_Replicate2.d.zip	1	2	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	12_Lenti_TID_eGFP_Sorted3_Replicate3.d.zip	proteomic profiling by mass spectrometry	12_Lenti_TID_eGFP_Sorted3_Replicate3.d.zip	1	3	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	13_Lenti_TID_eGFP_Unsorted_Replicate1.d.zip	proteomic profiling by mass spectrometry	13_Lenti_TID_eGFP_Unsorted_Replicate1.d.zip	1	4	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	14_Lenti_TID_eGFP_Unsorted_Replicate2.d.zip	proteomic profiling by mass spectrometry	14_Lenti_TID_eGFP_Unsorted_Replicate2.d.zip	1	5	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	15_Lenti_TID_eGFP_Unsorted_Replicate3.d.zip	proteomic profiling by mass spectrometry	15_Lenti_TID_eGFP_Unsorted_Replicate3.d.zip	1	6	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	16_FlpIn_TID_eGFP_Replicate1.d.zip	proteomic profiling by mass spectrometry	16_FlpIn_TID_eGFP_Replicate1.d.zip	1	7	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	17_FlpIn_TID_eGFP_Replicate2.d.zip	proteomic profiling by mass spectrometry	17_FlpIn_TID_eGFP_Replicate2.d.zip	1	8	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	18_FlpIn_TID_eGFP_Replicate3.d.zip	proteomic profiling by mass spectrometry	18_FlpIn_TID_eGFP_Replicate3.d.zip	1	9	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	19_FlpIn_TID_RNF10_Biotin_Replicate1.d.zip	proteomic profiling by mass spectrometry	19_FlpIn_TID_RNF10_Biotin_Replicate1.d.zip	1	10	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	1_293FlpIN_WT_NoTID_Replicate1.d.zip	proteomic profiling by mass spectrometry	1_293FlpIN_WT_NoTID_Replicate1.d.zip	1	11	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20_FlpIn_TID_RNF10_Biotin_Replicate2.d.zip	proteomic profiling by mass spectrometry	20_FlpIn_TID_RNF10_Biotin_Replicate2.d.zip	1	12	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	21_FlpIn_TID_RNF10_Biotin_Replicate3.d.zip	proteomic profiling by mass spectrometry	21_FlpIn_TID_RNF10_Biotin_Replicate3.d.zip	1	13	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	22_Lenti_TID_RNF10_Replicate1.d.zip	proteomic profiling by mass spectrometry	22_Lenti_TID_RNF10_Replicate1.d.zip	1	14	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	23_Lenti_TID_RNF10_Replicate2.d.zip	proteomic profiling by mass spectrometry	23_Lenti_TID_RNF10_Replicate2.d.zip	1	15	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	24_Lenti_TID_RNF10_Replicate3.d.zip	proteomic profiling by mass spectrometry	24_Lenti_TID_RNF10_Replicate3.d.zip	1	16	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	25_TID_KI_C_free_Replicate1.d.zip	proteomic profiling by mass spectrometry	25_TID_KI_C_free_Replicate1.d.zip	1	17	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	26_TID_KI_C_free_Replicate2.d.zip	proteomic profiling by mass spectrometry	26_TID_KI_C_free_Replicate2.d.zip	1	18	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	27_TID_KI_C_free_Replicate3.d.zip	proteomic profiling by mass spectrometry	27_TID_KI_C_free_Replicate3.d.zip	1	19	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	28_N_TID_KI_RNF10_Replicate1.d.zip	proteomic profiling by mass spectrometry	28_N_TID_KI_RNF10_Replicate1.d.zip	1	20	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	29_N_TID_KI_RNF10_Replicate2.d.zip	proteomic profiling by mass spectrometry	29_N_TID_KI_RNF10_Replicate2.d.zip	1	21	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	2_293FlpIN_WT_NoTID_Replicate2.d.zip	proteomic profiling by mass spectrometry	2_293FlpIN_WT_NoTID_Replicate2.d.zip	1	22	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	30_N_TID_KI_RNF10_Replicate3.d.zip	proteomic profiling by mass spectrometry	30_N_TID_KI_RNF10_Replicate3.d.zip	1	23	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	3_293FlpIN_WT_NoTID_Replicate3.d.zip	proteomic profiling by mass spectrometry	3_293FlpIN_WT_NoTID_Replicate3.d.zip	1	24	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	4_Lenti_TID_eGFP_Sorted1_Replicate1.d.zip	proteomic profiling by mass spectrometry	4_Lenti_TID_eGFP_Sorted1_Replicate1.d.zip	1	25	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	5_Lenti_TID_eGFP_Sorted1_Replicate2.d.zip	proteomic profiling by mass spectrometry	5_Lenti_TID_eGFP_Sorted1_Replicate2.d.zip	1	26	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	6_Lenti_TID_eGFP_Sorted1_Replicate3.d.zip	proteomic profiling by mass spectrometry	6_Lenti_TID_eGFP_Sorted1_Replicate3.d.zip	1	27	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	7_Lenti_TID_eGFP_Sorted2_Replicate1.d.zip	proteomic profiling by mass spectrometry	7_Lenti_TID_eGFP_Sorted2_Replicate1.d.zip	1	28	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	8_Lenti_TID_eGFP_Sorted2_Replicate2.d.zip	proteomic profiling by mass spectrometry	8_Lenti_TID_eGFP_Sorted2_Replicate2.d.zip	1	29	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	9_Lenti_TID_eGFP_Sorted2_Replicate3.d.zip	proteomic profiling by mass spectrometry	9_Lenti_TID_eGFP_Sorted2_Replicate3.d.zip	1	30	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset2.pg_matrix_norm_MaxLFQ.tsv	proteomic profiling by mass spectrometry	report_v192_dataset2.pg_matrix_norm_MaxLFQ.tsv	1	31	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset2_skyline.blib	proteomic profiling by mass spectrometry	report_v192_dataset2_skyline.blib	1	32	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset2_skyline.redundant.blib	proteomic profiling by mass spectrometry	report_v192_dataset2_skyline.redundant.blib	1	33	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset2_skyline.sky	proteomic profiling by mass spectrometry	report_v192_dataset2_skyline.sky	1	34	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061560-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset2_skyline.skyd	proteomic profiling by mass spectrometry	report_v192_dataset2_skyline.skyd	1	35	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD061563/PXD061563.sdrf.tsv b/datasets/PXD061563/PXD061563.sdrf.tsv
new file mode 100644
index 000000000..018b6f285
--- /dev/null
+++ b/datasets/PXD061563/PXD061563.sdrf.tsv
@@ -0,0 +1,51 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	10_293FlpIn_TID_eGFP_6h_Replicate1.d.zip	proteomic profiling by mass spectrometry	10_293FlpIn_TID_eGFP_6h_Replicate1.d.zip	1	1	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	11_293FlpIn_TID_eGFP_6h_Replicate2.d.zip	proteomic profiling by mass spectrometry	11_293FlpIn_TID_eGFP_6h_Replicate2.d.zip	1	2	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	12_293FlpIn_TID_eGFP_6h_Replicate3.d.zip	proteomic profiling by mass spectrometry	12_293FlpIn_TID_eGFP_6h_Replicate3.d.zip	1	3	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	13_293FlpIn_TID_eGFP_12h_Replicate1.d.zip	proteomic profiling by mass spectrometry	13_293FlpIn_TID_eGFP_12h_Replicate1.d.zip	1	4	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	14_293FlpIn_TID_eGFP_12h_Replicate2.d.zip	proteomic profiling by mass spectrometry	14_293FlpIn_TID_eGFP_12h_Replicate2.d.zip	1	5	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	15_293FlpIn_TID_eGFP_12h_Replicate3.d.zip	proteomic profiling by mass spectrometry	15_293FlpIn_TID_eGFP_12h_Replicate3.d.zip	1	6	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	16_293FlpIn_TID_eGFP_24h_Replicate1.d.zip	proteomic profiling by mass spectrometry	16_293FlpIn_TID_eGFP_24h_Replicate1.d.zip	1	7	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	17_293FlpIn_TID_eGFP_24h_Replicate2.d.zip	proteomic profiling by mass spectrometry	17_293FlpIn_TID_eGFP_24h_Replicate2.d.zip	1	8	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	18_293FlpIn_TID_eGFP_24h_Replicate3.d.zip	proteomic profiling by mass spectrometry	18_293FlpIn_TID_eGFP_24h_Replicate3.d.zip	1	9	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	19_293FlpIn_TID_RNF10_24h_Replicate1.d.zip	proteomic profiling by mass spectrometry	19_293FlpIn_TID_RNF10_24h_Replicate1.d.zip	1	10	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	1_293FlpIn_TID_eGFP_0h_Replicate1.d.zip	proteomic profiling by mass spectrometry	1_293FlpIn_TID_eGFP_0h_Replicate1.d.zip	1	11	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20_293FlpIn_TID_RNF10_24h_Replicate2.d.zip	proteomic profiling by mass spectrometry	20_293FlpIn_TID_RNF10_24h_Replicate2.d.zip	1	12	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	21_293FlpIn_TID_RNF10_24h_Replicate3.d.zip	proteomic profiling by mass spectrometry	21_293FlpIn_TID_RNF10_24h_Replicate3.d.zip	1	13	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	22_HAP1_WT_NoTID_Replicate1.d.zip	proteomic profiling by mass spectrometry	22_HAP1_WT_NoTID_Replicate1.d.zip	1	14	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	23_HAP1_WT_NoTID_Replicate2.d.zip	proteomic profiling by mass spectrometry	23_HAP1_WT_NoTID_Replicate2.d.zip	1	15	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	24_HAP1_WT_NoTID_Replicate3.d.zip	proteomic profiling by mass spectrometry	24_HAP1_WT_NoTID_Replicate3.d.zip	1	16	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	25_HAP1_TID_eGFP_1h_Replicate1.d.zip	proteomic profiling by mass spectrometry	25_HAP1_TID_eGFP_1h_Replicate1.d.zip	1	17	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	26_HAP1_TID_eGFP_1h_Replicate2.d.zip	proteomic profiling by mass spectrometry	26_HAP1_TID_eGFP_1h_Replicate2.d.zip	1	18	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	27_HAP1_TID_eGFP_1h_Replicate3.d.zip	proteomic profiling by mass spectrometry	27_HAP1_TID_eGFP_1h_Replicate3.d.zip	1	19	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	28_HAP1_TID_eGFP_3h_Replicate1.d.zip	proteomic profiling by mass spectrometry	28_HAP1_TID_eGFP_3h_Replicate1.d.zip	1	20	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	29_HAP1_TID_eGFP_3h_Replicate2.d.zip	proteomic profiling by mass spectrometry	29_HAP1_TID_eGFP_3h_Replicate2.d.zip	1	21	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	2_293FlpIn_TID_eGFP_0h_Replicate2.d.zip	proteomic profiling by mass spectrometry	2_293FlpIn_TID_eGFP_0h_Replicate2.d.zip	1	22	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	30_HAP1_TID_eGFP_3h_Replicate3.d.zip	proteomic profiling by mass spectrometry	30_HAP1_TID_eGFP_3h_Replicate3.d.zip	1	23	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	31_HAP1_TID_eGFP_6h_Replicate1.d.zip	proteomic profiling by mass spectrometry	31_HAP1_TID_eGFP_6h_Replicate1.d.zip	1	24	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	32_HAP1_TID_eGFP_6h_Replicate2.d.zip	proteomic profiling by mass spectrometry	32_HAP1_TID_eGFP_6h_Replicate2.d.zip	1	25	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	33_HAP1_TID_eGFP_6h_Replicate3.d.zip	proteomic profiling by mass spectrometry	33_HAP1_TID_eGFP_6h_Replicate3.d.zip	1	26	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	34_HAP1_TID_eGFP_9h_Replicate1.d.zip	proteomic profiling by mass spectrometry	34_HAP1_TID_eGFP_9h_Replicate1.d.zip	1	27	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	35_HAP1_TID_eGFP_9h_Replicate2.d.zip	proteomic profiling by mass spectrometry	35_HAP1_TID_eGFP_9h_Replicate2.d.zip	1	28	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	36_HAP1_TID_eGFP_9h_Replicate3.d.zip	proteomic profiling by mass spectrometry	36_HAP1_TID_eGFP_9h_Replicate3.d.zip	1	29	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	37_HAP1_TID_eGFP_12h_Replicate1.d.zip	proteomic profiling by mass spectrometry	37_HAP1_TID_eGFP_12h_Replicate1.d.zip	1	30	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	38_HAP1_TID_eGFP_12h_Replicate2.d.zip	proteomic profiling by mass spectrometry	38_HAP1_TID_eGFP_12h_Replicate2.d.zip	1	31	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	39_HAP1_TID_eGFP_12h_Replicate3.d.zip	proteomic profiling by mass spectrometry	39_HAP1_TID_eGFP_12h_Replicate3.d.zip	1	32	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	3_293FlpIn_TID_eGFP_0h_Replicate3.d.zip	proteomic profiling by mass spectrometry	3_293FlpIn_TID_eGFP_0h_Replicate3.d.zip	1	33	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	40_HAP1_TID_eGFP_24h_Replicate1.d.zip	proteomic profiling by mass spectrometry	40_HAP1_TID_eGFP_24h_Replicate1.d.zip	1	34	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	41_HAP1_TID_eGFP_24h_Replicate2.d.zip	proteomic profiling by mass spectrometry	41_HAP1_TID_eGFP_24h_Replicate2.d.zip	1	35	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	42_HAP1_TID_eGFP_24h_Replicate3.d.zip	proteomic profiling by mass spectrometry	42_HAP1_TID_eGFP_24h_Replicate3.d.zip	1	36	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	43_HAP1_TID_HUWE1_24h_Replicate1.d.zip	proteomic profiling by mass spectrometry	43_HAP1_TID_HUWE1_24h_Replicate1.d.zip	1	37	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	44_HAP1_TID_HUWE1_24h_Replicate2.d.zip	proteomic profiling by mass spectrometry	44_HAP1_TID_HUWE1_24h_Replicate2.d.zip	1	38	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	45_HAP1_TID_HUWE1_24h_Replicate3.d.zip	proteomic profiling by mass spectrometry	45_HAP1_TID_HUWE1_24h_Replicate3.d.zip	1	39	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	4_293FlpIn_TID_eGFP_1h_Replicate1.d.zip	proteomic profiling by mass spectrometry	4_293FlpIn_TID_eGFP_1h_Replicate1.d.zip	1	40	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	5_293FlpIn_TID_eGFP_1h_Replicate2.d.zip	proteomic profiling by mass spectrometry	5_293FlpIn_TID_eGFP_1h_Replicate2.d.zip	1	41	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	6_293FlpIn_TID_eGFP_1h_Replicate3.d.zip	proteomic profiling by mass spectrometry	6_293FlpIn_TID_eGFP_1h_Replicate3.d.zip	1	42	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	7_293FlpIn_TID_eGFP_3h_Replicate1.d.zip	proteomic profiling by mass spectrometry	7_293FlpIn_TID_eGFP_3h_Replicate1.d.zip	1	43	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	8_293FlpIn_TID_eGFP_3h_Replicate2.d.zip	proteomic profiling by mass spectrometry	8_293FlpIn_TID_eGFP_3h_Replicate2.d.zip	1	44	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	9_293FlpIn_TID_eGFP_3h_Replicate3.d.zip	proteomic profiling by mass spectrometry	9_293FlpIn_TID_eGFP_3h_Replicate3.d.zip	1	45	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset3.pg_matrix_norm_MaxLFQ.tsv	proteomic profiling by mass spectrometry	report_v192_dataset3.pg_matrix_norm_MaxLFQ.tsv	1	46	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset3_skyline.blib	proteomic profiling by mass spectrometry	report_v192_dataset3_skyline.blib	1	47	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset3_skyline.redundant.blib	proteomic profiling by mass spectrometry	report_v192_dataset3_skyline.redundant.blib	1	48	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset3_skyline.sky	proteomic profiling by mass spectrometry	report_v192_dataset3_skyline.sky	1	49	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061563-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset3_skyline.skyd	proteomic profiling by mass spectrometry	report_v192_dataset3_skyline.skyd	1	50	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD061564/PXD061564.sdrf.tsv b/datasets/PXD061564/PXD061564.sdrf.tsv
new file mode 100644
index 000000000..9acecd204
--- /dev/null
+++ b/datasets/PXD061564/PXD061564.sdrf.tsv
@@ -0,0 +1,28 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	10_HAP1_TID_eGFP_9h_Replicate1.d.zip	proteomic profiling by mass spectrometry	10_HAP1_TID_eGFP_9h_Replicate1.d.zip	1	1	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	11_HAP1_TID_eGFP_9h_Replicate2.d.zip	proteomic profiling by mass spectrometry	11_HAP1_TID_eGFP_9h_Replicate2.d.zip	1	2	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	12_HAP1_TID_eGFP_9h_Replicate3.d.zip	proteomic profiling by mass spectrometry	12_HAP1_TID_eGFP_9h_Replicate3.d.zip	1	3	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	13_HAP1_TID_eGFP_12h_Replicate1.d.zip	proteomic profiling by mass spectrometry	13_HAP1_TID_eGFP_12h_Replicate1.d.zip	1	4	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	14_HAP1_TID_eGFP_12h_Replicate2.d.zip	proteomic profiling by mass spectrometry	14_HAP1_TID_eGFP_12h_Replicate2.d.zip	1	5	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	15_HAP1_TID_eGFP_12h_Replicate3.d.zip	proteomic profiling by mass spectrometry	15_HAP1_TID_eGFP_12h_Replicate3.d.zip	1	6	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	16_HAP1_TID_eGFP_24h_Replicate1.d.zip	proteomic profiling by mass spectrometry	16_HAP1_TID_eGFP_24h_Replicate1.d.zip	1	7	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	17_HAP1_TID_eGFP_24h_Replicate2.d.zip	proteomic profiling by mass spectrometry	17_HAP1_TID_eGFP_24h_Replicate2.d.zip	1	8	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	18_HAP1_TID_eGFP_24h_Replicate3.d.zip	proteomic profiling by mass spectrometry	18_HAP1_TID_eGFP_24h_Replicate3.d.zip	1	9	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	19_HAP1_TID_HUWE1_24h_Replicate1.d.zip	proteomic profiling by mass spectrometry	19_HAP1_TID_HUWE1_24h_Replicate1.d.zip	1	10	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	1_HAP1_TID_eGFP_1h_Replicate1.d.zip	proteomic profiling by mass spectrometry	1_HAP1_TID_eGFP_1h_Replicate1.d.zip	1	11	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20_HAP1_TID_HUWE1_24h_Replicate2.d.zip	proteomic profiling by mass spectrometry	20_HAP1_TID_HUWE1_24h_Replicate2.d.zip	1	12	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	21_HAP1_TID_HUWE1_24h_Replicate3.d.zip	proteomic profiling by mass spectrometry	21_HAP1_TID_HUWE1_24h_Replicate3.d.zip	1	13	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	2_HAP1_TID_eGFP_1h_Replicate2.d.zip	proteomic profiling by mass spectrometry	2_HAP1_TID_eGFP_1h_Replicate2.d.zip	1	14	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	3_HAP1_TID_eGFP_1h_Replicate3.d.zip	proteomic profiling by mass spectrometry	3_HAP1_TID_eGFP_1h_Replicate3.d.zip	1	15	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	4_HAP1_TID_eGFP_3h_Replicate1.d.zip	proteomic profiling by mass spectrometry	4_HAP1_TID_eGFP_3h_Replicate1.d.zip	1	16	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	5_HAP1_TID_eGFP_3h_Replicate2.d.zip	proteomic profiling by mass spectrometry	5_HAP1_TID_eGFP_3h_Replicate2.d.zip	1	17	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	6_HAP1_TID_eGFP_3h_Replicate3.d.zip	proteomic profiling by mass spectrometry	6_HAP1_TID_eGFP_3h_Replicate3.d.zip	1	18	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	7_HAP1_TID_eGFP_6h_Replicate1.d.zip	proteomic profiling by mass spectrometry	7_HAP1_TID_eGFP_6h_Replicate1.d.zip	1	19	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	8_HAP1_TID_eGFP_6h_Replicate2.d.zip	proteomic profiling by mass spectrometry	8_HAP1_TID_eGFP_6h_Replicate2.d.zip	1	20	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	9_HAP1_TID_eGFP_6h_Replicate3.d.zip	proteomic profiling by mass spectrometry	9_HAP1_TID_eGFP_6h_Replicate3.d.zip	1	21	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset5.pg_matrix_norm.tsv	proteomic profiling by mass spectrometry	report_v192_dataset5.pg_matrix_norm.tsv	1	22	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset5.pg_matrix_unnorm.tsv	proteomic profiling by mass spectrometry	report_v192_dataset5.pg_matrix_unnorm.tsv	1	23	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset5_skyline.blib	proteomic profiling by mass spectrometry	report_v192_dataset5_skyline.blib	1	24	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset5_skyline.redundant.blib	proteomic profiling by mass spectrometry	report_v192_dataset5_skyline.redundant.blib	1	25	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset5_skyline.sky	proteomic profiling by mass spectrometry	report_v192_dataset5_skyline.sky	1	26	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061564-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset5_skyline.skyd	proteomic profiling by mass spectrometry	report_v192_dataset5_skyline.skyd	1	27	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD061566/PXD061566.sdrf.tsv b/datasets/PXD061566/PXD061566.sdrf.tsv
new file mode 100644
index 000000000..d3f10fcc4
--- /dev/null
+++ b/datasets/PXD061566/PXD061566.sdrf.tsv
@@ -0,0 +1,28 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	10_293FlpIn_TID_eGFP_6h_Replicate1.d.zip	proteomic profiling by mass spectrometry	10_293FlpIn_TID_eGFP_6h_Replicate1.d.zip	1	1	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	11_293FlpIn_TID_eGFP_6h_Replicate2.d.zip	proteomic profiling by mass spectrometry	11_293FlpIn_TID_eGFP_6h_Replicate2.d.zip	1	2	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	12_293FlpIn_TID_eGFP_6h_Replicate3.d.zip	proteomic profiling by mass spectrometry	12_293FlpIn_TID_eGFP_6h_Replicate3.d.zip	1	3	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	13_293FlpIn_TID_eGFP_12h_Replicate1.d.zip	proteomic profiling by mass spectrometry	13_293FlpIn_TID_eGFP_12h_Replicate1.d.zip	1	4	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	14_293FlpIn_TID_eGFP_12h_Replicate2.d.zip	proteomic profiling by mass spectrometry	14_293FlpIn_TID_eGFP_12h_Replicate2.d.zip	1	5	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	15_293FlpIn_TID_eGFP_12h_Replicate3.d.zip	proteomic profiling by mass spectrometry	15_293FlpIn_TID_eGFP_12h_Replicate3.d.zip	1	6	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	16_293FlpIn_TID_eGFP_24h_Replicate1.d.zip	proteomic profiling by mass spectrometry	16_293FlpIn_TID_eGFP_24h_Replicate1.d.zip	1	7	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	17_293FlpIn_TID_eGFP_24h_Replicate2.d.zip	proteomic profiling by mass spectrometry	17_293FlpIn_TID_eGFP_24h_Replicate2.d.zip	1	8	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	18_293FlpIn_TID_eGFP_24h_Replicate3.d.zip	proteomic profiling by mass spectrometry	18_293FlpIn_TID_eGFP_24h_Replicate3.d.zip	1	9	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	19_293FlpIn_TID_RNF10_24h_Replicate1.d.zip	proteomic profiling by mass spectrometry	19_293FlpIn_TID_RNF10_24h_Replicate1.d.zip	1	10	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	1_293FlpIn_TID_eGFP_0h_Replicate1.d.zip	proteomic profiling by mass spectrometry	1_293FlpIn_TID_eGFP_0h_Replicate1.d.zip	1	11	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20_293FlpIn_TID_RNF10_24h_Replicate2.d.zip	proteomic profiling by mass spectrometry	20_293FlpIn_TID_RNF10_24h_Replicate2.d.zip	1	12	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	21_293FlpIn_TID_RNF10_24h_Replicate3.d.zip	proteomic profiling by mass spectrometry	21_293FlpIn_TID_RNF10_24h_Replicate3.d.zip	1	13	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	2_293FlpIn_TID_eGFP_0h_Replicate2.d.zip	proteomic profiling by mass spectrometry	2_293FlpIn_TID_eGFP_0h_Replicate2.d.zip	1	14	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	3_293FlpIn_TID_eGFP_0h_Replicate3.d.zip	proteomic profiling by mass spectrometry	3_293FlpIn_TID_eGFP_0h_Replicate3.d.zip	1	15	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	4_293FlpIn_TID_eGFP_1h_Replicate1.d.zip	proteomic profiling by mass spectrometry	4_293FlpIn_TID_eGFP_1h_Replicate1.d.zip	1	16	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	5_293FlpIn_TID_eGFP_1h_Replicate2.d.zip	proteomic profiling by mass spectrometry	5_293FlpIn_TID_eGFP_1h_Replicate2.d.zip	1	17	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	6_293FlpIn_TID_eGFP_1h_Replicate3.d.zip	proteomic profiling by mass spectrometry	6_293FlpIn_TID_eGFP_1h_Replicate3.d.zip	1	18	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	7_293FlpIn_TID_eGFP_3h_Replicate1.d.zip	proteomic profiling by mass spectrometry	7_293FlpIn_TID_eGFP_3h_Replicate1.d.zip	1	19	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	8_293FlpIn_TID_eGFP_3h_Replicate2.d.zip	proteomic profiling by mass spectrometry	8_293FlpIn_TID_eGFP_3h_Replicate2.d.zip	1	20	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	9_293FlpIn_TID_eGFP_3h_Replicate3.d.zip	proteomic profiling by mass spectrometry	9_293FlpIn_TID_eGFP_3h_Replicate3.d.zip	1	21	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset4.pg_matrix_norm.tsv	proteomic profiling by mass spectrometry	report_v192_dataset4.pg_matrix_norm.tsv	1	22	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset4.pg_matrix_unnorm.tsv	proteomic profiling by mass spectrometry	report_v192_dataset4.pg_matrix_unnorm.tsv	1	23	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset4_skyline.blib	proteomic profiling by mass spectrometry	report_v192_dataset4_skyline.blib	1	24	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset4_skyline.redundant.blib	proteomic profiling by mass spectrometry	report_v192_dataset4_skyline.redundant.blib	1	25	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset4_skyline.sky	proteomic profiling by mass spectrometry	report_v192_dataset4_skyline.sky	1	26	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061566-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	report_v192_dataset4_skyline.skyd	proteomic profiling by mass spectrometry	report_v192_dataset4_skyline.skyd	1	27	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	dithiothreitol	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD061687/PXD061687.sdrf.tsv b/datasets/PXD061687/PXD061687.sdrf.tsv
new file mode 100644
index 000000000..9be74cb2d
--- /dev/null
+++ b/datasets/PXD061687/PXD061687.sdrf.tsv
@@ -0,0 +1,17 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD061687-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240926_HF1_MaRa_SA_P0245_S1_01	proteomic profiling by mass spectrometry	20240926_HF1_MaRa_SA_P0245_S1_01.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061687-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240926_HF1_MaRa_SA_P0245_S1_02	proteomic profiling by mass spectrometry	20240926_HF1_MaRa_SA_P0245_S1_02.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061687-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240926_HF1_MaRa_SA_P0245_S1_03	proteomic profiling by mass spectrometry	20240926_HF1_MaRa_SA_P0245_S1_03.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061687-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240926_HF1_MaRa_SA_P0245_S1_04	proteomic profiling by mass spectrometry	20240926_HF1_MaRa_SA_P0245_S1_04.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061687-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240926_HF1_MaRa_SA_P0245_S2_01	proteomic profiling by mass spectrometry	20240926_HF1_MaRa_SA_P0245_S2_01.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061687-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240926_HF1_MaRa_SA_P0245_S2_02	proteomic profiling by mass spectrometry	20240926_HF1_MaRa_SA_P0245_S2_02.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061687-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240926_HF1_MaRa_SA_P0245_S2_03	proteomic profiling by mass spectrometry	20240926_HF1_MaRa_SA_P0245_S2_03.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061687-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240926_HF1_MaRa_SA_P0245_S2_04	proteomic profiling by mass spectrometry	20240926_HF1_MaRa_SA_P0245_S2_04.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061687-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240926_HF1_MaRa_SA_P0245_S3_01	proteomic profiling by mass spectrometry	20240926_HF1_MaRa_SA_P0245_S3_01.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061687-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240926_HF1_MaRa_SA_P0245_S3_02	proteomic profiling by mass spectrometry	20240926_HF1_MaRa_SA_P0245_S3_02.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061687-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240926_HF1_MaRa_SA_P0245_S3_03	proteomic profiling by mass spectrometry	20240926_HF1_MaRa_SA_P0245_S3_03.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061687-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240926_HF1_MaRa_SA_P0245_S3_04	proteomic profiling by mass spectrometry	20240926_HF1_MaRa_SA_P0245_S3_04.raw	1	12	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061687-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240926_HF1_MaRa_SA_P0245_S4_01	proteomic profiling by mass spectrometry	20240926_HF1_MaRa_SA_P0245_S4_01.raw	1	13	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061687-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240926_HF1_MaRa_SA_P0245_S4_02	proteomic profiling by mass spectrometry	20240926_HF1_MaRa_SA_P0245_S4_02.raw	1	14	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061687-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240926_HF1_MaRa_SA_P0245_S4_03	proteomic profiling by mass spectrometry	20240926_HF1_MaRa_SA_P0245_S4_03.raw	1	15	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061687-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240926_HF1_MaRa_SA_P0245_S4_04	proteomic profiling by mass spectrometry	20240926_HF1_MaRa_SA_P0245_S4_04.raw	1	16	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD061691/PXD061691.sdrf.tsv b/datasets/PXD061691/PXD061691.sdrf.tsv
new file mode 100644
index 000000000..3c6f5316a
--- /dev/null
+++ b/datasets/PXD061691/PXD061691.sdrf.tsv
@@ -0,0 +1,33 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTGFP_BAF_IgG_01	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTGFP_BAF_IgG_01.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTGFP_BAF_IgG_02	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTGFP_BAF_IgG_02.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTGFP_BAF_IgG_03	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTGFP_BAF_IgG_03.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTGFP_BAF_IgG_04	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTGFP_BAF_IgG_04.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTGFP_BAF_P62_01	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTGFP_BAF_P62_01.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTGFP_BAF_P62_02	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTGFP_BAF_P62_02.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTGFP_BAF_P62_03	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTGFP_BAF_P62_03.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTGFP_BAF_P62_04	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTGFP_BAF_P62_04.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTGFP_DMSO_IgG_01	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTGFP_DMSO_IgG_01.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTGFP_DMSO_IgG_02	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTGFP_DMSO_IgG_02.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTGFP_DMSO_IgG_03	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTGFP_DMSO_IgG_03.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTGFP_DMSO_IgG_04	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTGFP_DMSO_IgG_04.raw	1	12	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTGFP_DMSO_P62_01	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTGFP_DMSO_P62_01.raw	1	13	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTGFP_DMSO_P62_02	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTGFP_DMSO_P62_02.raw	1	14	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTGFP_DMSO_P62_03	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTGFP_DMSO_P62_03.raw	1	15	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTGFP_DMSO_P62_04	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTGFP_DMSO_P62_04.raw	1	16	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTP62_BAF_IgG_01	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTP62_BAF_IgG_01.raw	1	17	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTP62_BAF_IgG_02	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTP62_BAF_IgG_02.raw	1	18	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTP62_BAF_IgG_03	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTP62_BAF_IgG_03.raw	1	19	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTP62_BAF_IgG_04	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTP62_BAF_IgG_04.raw	1	20	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTP62_BAF_P62_01	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTP62_BAF_P62_01.raw	1	21	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTP62_BAF_P62_02	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTP62_BAF_P62_02.raw	1	22	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTP62_BAF_P62_03	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTP62_BAF_P62_03.raw	1	23	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTP62_BAF_P62_04	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTP62_BAF_P62_04.raw	1	24	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTP62_DMSO_IgG_01	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTP62_DMSO_IgG_01.raw	1	25	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTP62_DMSO_IgG_02	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTP62_DMSO_IgG_02.raw	1	26	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTP62_DMSO_IgG_03	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTP62_DMSO_IgG_03.raw	1	27	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTP62_DMSO_IgG_04	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTP62_DMSO_IgG_04.raw	1	28	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTP62_DMSO_P62_01	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTP62_DMSO_P62_01.raw	1	29	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTP62_DMSO_P62_02	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTP62_DMSO_P62_02.raw	1	30	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTP62_DMSO_P62_03	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTP62_DMSO_P62_03.raw	1	31	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061691-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20240904_HF1_MaRa_SA_P0238_WTP62_DMSO_P62_04	proteomic profiling by mass spectrometry	20240904_HF1_MaRa_SA_P0238_WTP62_DMSO_P62_04.raw	1	32	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD061712/PXD061712.sdrf.tsv b/datasets/PXD061712/PXD061712.sdrf.tsv
new file mode 100644
index 000000000..c0f5f6123
--- /dev/null
+++ b/datasets/PXD061712/PXD061712.sdrf.tsv
@@ -0,0 +1,38 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20210831_HF1_MaRa_SA_P0120C_54_p62_Baf_01	proteomic profiling by mass spectrometry	20210831_HF1_MaRa_SA_P0120C_54_p62_Baf_01.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20210831_HF1_MaRa_SA_P0120C_54_p62_Baf_02	proteomic profiling by mass spectrometry	20210831_HF1_MaRa_SA_P0120C_54_p62_Baf_02.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20210831_HF1_MaRa_SA_P0120C_54_p62_Baf_03	proteomic profiling by mass spectrometry	20210831_HF1_MaRa_SA_P0120C_54_p62_Baf_03.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20210831_HF1_MaRa_SA_P0120C_54_p62_DMSO_01	proteomic profiling by mass spectrometry	20210831_HF1_MaRa_SA_P0120C_54_p62_DMSO_01.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20210831_HF1_MaRa_SA_P0120C_54_p62_DMSO_02	proteomic profiling by mass spectrometry	20210831_HF1_MaRa_SA_P0120C_54_p62_DMSO_02.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20210831_HF1_MaRa_SA_P0120C_54_p62_DMSO_03	proteomic profiling by mass spectrometry	20210831_HF1_MaRa_SA_P0120C_54_p62_DMSO_03.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20210831_HF1_MaRa_SA_P0120C_WT_p62_Baf_01	proteomic profiling by mass spectrometry	20210831_HF1_MaRa_SA_P0120C_WT_p62_Baf_01.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20210831_HF1_MaRa_SA_P0120C_WT_p62_Baf_02	proteomic profiling by mass spectrometry	20210831_HF1_MaRa_SA_P0120C_WT_p62_Baf_02.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20210831_HF1_MaRa_SA_P0120C_WT_p62_Baf_03	proteomic profiling by mass spectrometry	20210831_HF1_MaRa_SA_P0120C_WT_p62_Baf_03.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20210831_HF1_MaRa_SA_P0120C_WT_p62_DMSO_01	proteomic profiling by mass spectrometry	20210831_HF1_MaRa_SA_P0120C_WT_p62_DMSO_01.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20210831_HF1_MaRa_SA_P0120C_WT_p62_DMSO_02	proteomic profiling by mass spectrometry	20210831_HF1_MaRa_SA_P0120C_WT_p62_DMSO_02.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20210831_HF1_MaRa_SA_P0120C_WT_p62_DMSO_03	proteomic profiling by mass spectrometry	20210831_HF1_MaRa_SA_P0120C_WT_p62_DMSO_03.raw	1	12	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20220626_HF1_MaRa_SA_P0159_CO_01	proteomic profiling by mass spectrometry	20220626_HF1_MaRa_SA_P0159_CO_01.raw	1	13	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20220626_HF1_MaRa_SA_P0159_CO_02	proteomic profiling by mass spectrometry	20220626_HF1_MaRa_SA_P0159_CO_02.raw	1	14	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20220626_HF1_MaRa_SA_P0159_CO_03	proteomic profiling by mass spectrometry	20220626_HF1_MaRa_SA_P0159_CO_03.raw	1	15	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20220626_HF1_MaRa_SA_P0159_p62_HCT116_133_BAF_01	proteomic profiling by mass spectrometry	20220626_HF1_MaRa_SA_P0159_p62_HCT116_133_BAF_01.raw	1	16	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20220626_HF1_MaRa_SA_P0159_p62_HCT116_133_BAF_02	proteomic profiling by mass spectrometry	20220626_HF1_MaRa_SA_P0159_p62_HCT116_133_BAF_02.raw	1	17	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20220626_HF1_MaRa_SA_P0159_p62_HCT116_133_BAF_03	proteomic profiling by mass spectrometry	20220626_HF1_MaRa_SA_P0159_p62_HCT116_133_BAF_03.raw	1	18	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20220626_HF1_MaRa_SA_P0159_p62_HCT116_133_DMSO_01	proteomic profiling by mass spectrometry	20220626_HF1_MaRa_SA_P0159_p62_HCT116_133_DMSO_01.raw	1	19	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20220626_HF1_MaRa_SA_P0159_p62_HCT116_133_DMSO_02	proteomic profiling by mass spectrometry	20220626_HF1_MaRa_SA_P0159_p62_HCT116_133_DMSO_02.raw	1	20	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20220626_HF1_MaRa_SA_P0159_p62_HCT116_133_DMSO_03	proteomic profiling by mass spectrometry	20220626_HF1_MaRa_SA_P0159_p62_HCT116_133_DMSO_03.raw	1	21	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241108_HF1_MaRa_SA_P0245B_1	proteomic profiling by mass spectrometry	20241108_HF1_MaRa_SA_P0245B_1.raw	1	22	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241108_HF1_MaRa_SA_P0245B_10	proteomic profiling by mass spectrometry	20241108_HF1_MaRa_SA_P0245B_10.raw	1	23	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241108_HF1_MaRa_SA_P0245B_11	proteomic profiling by mass spectrometry	20241108_HF1_MaRa_SA_P0245B_11.raw	1	24	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241108_HF1_MaRa_SA_P0245B_12	proteomic profiling by mass spectrometry	20241108_HF1_MaRa_SA_P0245B_12.raw	1	25	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241108_HF1_MaRa_SA_P0245B_13	proteomic profiling by mass spectrometry	20241108_HF1_MaRa_SA_P0245B_13.raw	1	26	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241108_HF1_MaRa_SA_P0245B_14	proteomic profiling by mass spectrometry	20241108_HF1_MaRa_SA_P0245B_14.raw	1	27	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241108_HF1_MaRa_SA_P0245B_15	proteomic profiling by mass spectrometry	20241108_HF1_MaRa_SA_P0245B_15.raw	1	28	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241108_HF1_MaRa_SA_P0245B_16	proteomic profiling by mass spectrometry	20241108_HF1_MaRa_SA_P0245B_16.raw	1	29	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241108_HF1_MaRa_SA_P0245B_2	proteomic profiling by mass spectrometry	20241108_HF1_MaRa_SA_P0245B_2.raw	1	30	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241108_HF1_MaRa_SA_P0245B_3	proteomic profiling by mass spectrometry	20241108_HF1_MaRa_SA_P0245B_3.raw	1	31	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241108_HF1_MaRa_SA_P0245B_4	proteomic profiling by mass spectrometry	20241108_HF1_MaRa_SA_P0245B_4.raw	1	32	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241108_HF1_MaRa_SA_P0245B_5	proteomic profiling by mass spectrometry	20241108_HF1_MaRa_SA_P0245B_5.raw	1	33	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241108_HF1_MaRa_SA_P0245B_6	proteomic profiling by mass spectrometry	20241108_HF1_MaRa_SA_P0245B_6.raw	1	34	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241108_HF1_MaRa_SA_P0245B_7	proteomic profiling by mass spectrometry	20241108_HF1_MaRa_SA_P0245B_7.raw	1	35	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241108_HF1_MaRa_SA_P0245B_8	proteomic profiling by mass spectrometry	20241108_HF1_MaRa_SA_P0245B_8.raw	1	36	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD061712-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241108_HF1_MaRa_SA_P0245B_9	proteomic profiling by mass spectrometry	20241108_HF1_MaRa_SA_P0245B_9.raw	1	37	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX2;AC=XLMOD:02252	not available	not available	components	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD061752/PXD061752.sdrf.tsv b/datasets/PXD061752/PXD061752.sdrf.tsv
new file mode 100644
index 000000000..2b56308ae
--- /dev/null
+++ b/datasets/PXD061752/PXD061752.sdrf.tsv
@@ -0,0 +1,12 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]
+PXD061752-sample	sordaria macrospora	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	LH_Q_89	proteomic profiling by mass spectrometry	LH_Q_89.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061752-sample	sordaria macrospora	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	LH_Q_90	proteomic profiling by mass spectrometry	LH_Q_90.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061752-sample	sordaria macrospora	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	LH_Q_91	proteomic profiling by mass spectrometry	LH_Q_91.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061752-sample	sordaria macrospora	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	LH_Q_92	proteomic profiling by mass spectrometry	LH_Q_92.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061752-sample	sordaria macrospora	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	LH_Q_93	proteomic profiling by mass spectrometry	LH_Q_93.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061752-sample	sordaria macrospora	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	LH_Q_94	proteomic profiling by mass spectrometry	LH_Q_94.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061752-sample	sordaria macrospora	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	LH_Q_95	proteomic profiling by mass spectrometry	LH_Q_95.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061752-sample	sordaria macrospora	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	LH_Q_96	proteomic profiling by mass spectrometry	LH_Q_96.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061752-sample	sordaria macrospora	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	LH_Q_97	proteomic profiling by mass spectrometry	LH_Q_97.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061752-sample	sordaria macrospora	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	MaxQuant_search.zip	proteomic profiling by mass spectrometry	MaxQuant_search.zip	1	10	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD061752-sample	sordaria macrospora	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	checksum.txt	proteomic profiling by mass spectrometry	checksum.txt	1	11	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
diff --git a/datasets/PXD062101/PXD062101.sdrf.tsv b/datasets/PXD062101/PXD062101.sdrf.tsv
new file mode 100644
index 000000000..f28759072
--- /dev/null
+++ b/datasets/PXD062101/PXD062101.sdrf.tsv
@@ -0,0 +1,16 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD062101-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241206_Z01.wiff	proteomic profiling by mass spectrometry	20241206_Z01.wiff	1	1	AC=MS:1002038;NT=label free sample	NT=ZenoTOF 7600;AC=MS:1003293	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062101-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241206_Z02.wiff	proteomic profiling by mass spectrometry	20241206_Z02.wiff	1	2	AC=MS:1002038;NT=label free sample	NT=ZenoTOF 7600;AC=MS:1003293	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062101-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241206_Z03.wiff	proteomic profiling by mass spectrometry	20241206_Z03.wiff	1	3	AC=MS:1002038;NT=label free sample	NT=ZenoTOF 7600;AC=MS:1003293	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062101-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241206_Z04.wiff	proteomic profiling by mass spectrometry	20241206_Z04.wiff	1	4	AC=MS:1002038;NT=label free sample	NT=ZenoTOF 7600;AC=MS:1003293	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062101-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241206_Z05.wiff	proteomic profiling by mass spectrometry	20241206_Z05.wiff	1	5	AC=MS:1002038;NT=label free sample	NT=ZenoTOF 7600;AC=MS:1003293	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062101-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241206_Z06.wiff	proteomic profiling by mass spectrometry	20241206_Z06.wiff	1	6	AC=MS:1002038;NT=label free sample	NT=ZenoTOF 7600;AC=MS:1003293	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062101-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241206_Z07.wiff	proteomic profiling by mass spectrometry	20241206_Z07.wiff	1	7	AC=MS:1002038;NT=label free sample	NT=ZenoTOF 7600;AC=MS:1003293	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062101-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241206_Z08.wiff	proteomic profiling by mass spectrometry	20241206_Z08.wiff	1	8	AC=MS:1002038;NT=label free sample	NT=ZenoTOF 7600;AC=MS:1003293	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062101-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241206_Z09.wiff	proteomic profiling by mass spectrometry	20241206_Z09.wiff	1	9	AC=MS:1002038;NT=label free sample	NT=ZenoTOF 7600;AC=MS:1003293	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062101-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241206_Z10.wiff	proteomic profiling by mass spectrometry	20241206_Z10.wiff	1	10	AC=MS:1002038;NT=label free sample	NT=ZenoTOF 7600;AC=MS:1003293	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062101-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241206_Z11.wiff	proteomic profiling by mass spectrometry	20241206_Z11.wiff	1	11	AC=MS:1002038;NT=label free sample	NT=ZenoTOF 7600;AC=MS:1003293	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062101-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241206_Z12.wiff	proteomic profiling by mass spectrometry	20241206_Z12.wiff	1	12	AC=MS:1002038;NT=label free sample	NT=ZenoTOF 7600;AC=MS:1003293	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062101-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241206_Z13.wiff	proteomic profiling by mass spectrometry	20241206_Z13.wiff	1	13	AC=MS:1002038;NT=label free sample	NT=ZenoTOF 7600;AC=MS:1003293	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062101-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241206_Z14.wiff	proteomic profiling by mass spectrometry	20241206_Z14.wiff	1	14	AC=MS:1002038;NT=label free sample	NT=ZenoTOF 7600;AC=MS:1003293	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062101-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	20241206_Z15.wiff	proteomic profiling by mass spectrometry	20241206_Z15.wiff	1	15	AC=MS:1002038;NT=label free sample	NT=ZenoTOF 7600;AC=MS:1003293	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD062203/PXD062203.sdrf.tsv b/datasets/PXD062203/PXD062203.sdrf.tsv
new file mode 100644
index 000000000..b5299889a
--- /dev/null
+++ b/datasets/PXD062203/PXD062203.sdrf.tsv
@@ -0,0 +1,5 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD062203-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	2 Å	not available	not available	H1.0_PLAMseq_raw.zip	proteomic profiling by mass spectrometry	H1.0_PLAMseq_raw.zip	1	1	AC=MS:1002038;NT=label free sample	NT=timsTOF SCP;AC=MS:1003231	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062203-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	2 Å	not available	not available	H1.2_PLAMseq_raw.zip	proteomic profiling by mass spectrometry	H1.2_PLAMseq_raw.zip	1	2	AC=MS:1002038;NT=label free sample	NT=timsTOF SCP;AC=MS:1003231	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062203-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	2 Å	not available	not available	H1.4_PLAMseq_raw.zip	proteomic profiling by mass spectrometry	H1.4_PLAMseq_raw.zip	1	3	AC=MS:1002038;NT=label free sample	NT=timsTOF SCP;AC=MS:1003231	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062203-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	2 Å	not available	not available	TurboID_only_RAW.zip	proteomic profiling by mass spectrometry	TurboID_only_RAW.zip	1	4	AC=MS:1002038;NT=label free sample	NT=timsTOF SCP;AC=MS:1003231	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	by	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD062293/PXD062293.sdrf.tsv b/datasets/PXD062293/PXD062293.sdrf.tsv
new file mode 100644
index 000000000..4d8831d90
--- /dev/null
+++ b/datasets/PXD062293/PXD062293.sdrf.tsv
@@ -0,0 +1,11 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]
+PXD062293-sample	synechocystis sp. pcc 6803	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Fl09ZZW_PtN_1_10_C8_1_2433.d.zip	proteomic profiling by mass spectrometry	Fl09ZZW_PtN_1_10_C8_1_2433.d.zip	1	1	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062293-sample	synechocystis sp. pcc 6803	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Fl09ZZW_PtN_2_11_D8_1_2434.d.zip	proteomic profiling by mass spectrometry	Fl09ZZW_PtN_2_11_D8_1_2434.d.zip	1	2	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062293-sample	synechocystis sp. pcc 6803	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Fl09ZZW_PtN_3_12_E8_1_2435.d.zip	proteomic profiling by mass spectrometry	Fl09ZZW_PtN_3_12_E8_1_2435.d.zip	1	3	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062293-sample	synechocystis sp. pcc 6803	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Fl09ZZW_Pt_1_4_C7_1_2427.d.zip	proteomic profiling by mass spectrometry	Fl09ZZW_Pt_1_4_C7_1_2427.d.zip	1	4	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062293-sample	synechocystis sp. pcc 6803	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Fl09ZZW_Pt_2_5_D7_1_2428.d.zip	proteomic profiling by mass spectrometry	Fl09ZZW_Pt_2_5_D7_1_2428.d.zip	1	5	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062293-sample	synechocystis sp. pcc 6803	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Fl09ZZW_Pt_3_6_E7_1_2429.d.zip	proteomic profiling by mass spectrometry	Fl09ZZW_Pt_3_6_E7_1_2429.d.zip	1	6	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062293-sample	synechocystis sp. pcc 6803	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Fl09ZZW_TB_1_1_F6_1_2424.d.zip	proteomic profiling by mass spectrometry	Fl09ZZW_TB_1_1_F6_1_2424.d.zip	1	7	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062293-sample	synechocystis sp. pcc 6803	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Fl09ZZW_TB_2_2_A7_1_2425.d.zip	proteomic profiling by mass spectrometry	Fl09ZZW_TB_2_2_A7_1_2425.d.zip	1	8	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062293-sample	synechocystis sp. pcc 6803	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Fl09ZZW_TB_3_3_B7_1_2426.d.zip	proteomic profiling by mass spectrometry	Fl09ZZW_TB_3_3_B7_1_2426.d.zip	1	9	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062293-sample	synechocystis sp. pcc 6803	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	maxquant_result.zip	proteomic profiling by mass spectrometry	maxquant_result.zip	1	10	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
diff --git a/datasets/PXD062479/PXD062479.sdrf.tsv b/datasets/PXD062479/PXD062479.sdrf.tsv
new file mode 100644
index 000000000..723c1a43d
--- /dev/null
+++ b/datasets/PXD062479/PXD062479.sdrf.tsv
@@ -0,0 +1,41 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20231014_Jenny_Tadakimi_Toxo_XL_s1_1_s1_5_7	proteomic profiling by mass spectrometry	20231014_Jenny_Tadakimi_Toxo_XL_s1_1_s1_5_7.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20231014_Jenny_Tadakimi_Toxo_XL_s1_2_s1_6_8	proteomic profiling by mass spectrometry	20231014_Jenny_Tadakimi_Toxo_XL_s1_2_s1_6_8.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20231014_Jenny_Tadakimi_Toxo_XL_s1_3_s1_7_6	proteomic profiling by mass spectrometry	20231014_Jenny_Tadakimi_Toxo_XL_s1_3_s1_7_6.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20231014_Jenny_Tadakimi_Toxo_XL_s1_4_s1_8_5	proteomic profiling by mass spectrometry	20231014_Jenny_Tadakimi_Toxo_XL_s1_4_s1_8_5.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20231014_Jenny_Tadakimi_Toxo_XL_s1_FT_9	proteomic profiling by mass spectrometry	20231014_Jenny_Tadakimi_Toxo_XL_s1_FT_9.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20231014_Jenny_Tadakimi_Toxo_XL_s2_1_s2_5_4	proteomic profiling by mass spectrometry	20231014_Jenny_Tadakimi_Toxo_XL_s2_1_s2_5_4.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20231014_Jenny_Tadakimi_Toxo_XL_s2_2_s2_6_3	proteomic profiling by mass spectrometry	20231014_Jenny_Tadakimi_Toxo_XL_s2_2_s2_6_3.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20231014_Jenny_Tadakimi_Toxo_XL_s2_3_s2_7_2	proteomic profiling by mass spectrometry	20231014_Jenny_Tadakimi_Toxo_XL_s2_3_s2_7_2.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20231014_Jenny_Tadakimi_Toxo_XL_s2_4_s2_8_1	proteomic profiling by mass spectrometry	20231014_Jenny_Tadakimi_Toxo_XL_s2_4_s2_8_1.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20231014_Jenny_Tadakimi_Toxo_XL_s2_FT_10	proteomic profiling by mass spectrometry	20231014_Jenny_Tadakimi_Toxo_XL_s2_FT_10.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240404_Jenny_Tadakimi_cystwall_com_urea_E	proteomic profiling by mass spectrometry	20240404_Jenny_Tadakimi_cystwall_com_urea_E.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240404_Jenny_Tadakimi_tachy_sol_com_DOC_B	proteomic profiling by mass spectrometry	20240404_Jenny_Tadakimi_tachy_sol_com_DOC_B.raw	1	12	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240404_Jenny_Tadakimi_tachy_sol_com_urea_A	proteomic profiling by mass spectrometry	20240404_Jenny_Tadakimi_tachy_sol_com_urea_A.raw	1	13	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240404_Jenny_Tadakimi_tachy_sol_home_DOC_D	proteomic profiling by mass spectrometry	20240404_Jenny_Tadakimi_tachy_sol_home_DOC_D.raw	1	14	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240404_Jenny_Tadakimi_tachy_sol_home_urea_C	proteomic profiling by mass spectrometry	20240404_Jenny_Tadakimi_tachy_sol_home_urea_C.raw	1	15	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240810_Tadakimi_Toxo_XL_MCE	proteomic profiling by mass spectrometry	20240810_Tadakimi_Toxo_XL_MCE.raw	1	16	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240810_Tadakimi_Toxo_XL_Sigma	proteomic profiling by mass spectrometry	20240810_Tadakimi_Toxo_XL_Sigma.raw	1	17	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_1_1	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_1_1.raw	1	18	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_1_10	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_1_10.raw	1	19	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_1_2	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_1_2.raw	1	20	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_1_3	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_1_3.raw	1	21	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_1_4	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_1_4.raw	1	22	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_1_5	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_1_5.raw	1	23	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_1_6	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_1_6.raw	1	24	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_1_7	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_1_7.raw	1	25	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_1_8	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_1_8.raw	1	26	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_1_9	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_1_9.raw	1	27	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_2_1	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_2_1.raw	1	28	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_2_10	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_2_10.raw	1	29	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_2_2	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_2_2.raw	1	30	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_2_3	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_2_3.raw	1	31	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_2_4	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_2_4.raw	1	32	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_2_5	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_2_5.raw	1	33	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_2_6	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_2_6.raw	1	34	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_2_7	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_2_7.raw	1	35	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_2_8	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_2_8.raw	1	36	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	20240906_Jenny_Tadakimi_Toxo_XL_2_9	proteomic profiling by mass spectrometry	20240906_Jenny_Tadakimi_Toxo_XL_2_9.raw	1	37	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	Temp_results.msf	proteomic profiling by mass spectrometry	Temp_results.msf	1	38	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	ToxoDB_August2019.fasta	proteomic profiling by mass spectrometry	ToxoDB_August2019.fasta	1	39	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD062479-sample	toxoplasma gondii type i	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	checksum.txt	proteomic profiling by mass spectrometry	checksum.txt	1	40	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
diff --git a/datasets/PXD062557/PXD062557.sdrf.tsv b/datasets/PXD062557/PXD062557.sdrf.tsv
new file mode 100644
index 000000000..a0eb79b9d
--- /dev/null
+++ b/datasets/PXD062557/PXD062557.sdrf.tsv
@@ -0,0 +1,43 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[developmental stage]	characteristics[strain or breed]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20220512_E3_RSLC1_Jelenic_Saha_IMBA_ID722_onbead_dig_5per_control_1A_N2_A	proteomic profiling by mass spectrometry	20220512_E3_RSLC1_Jelenic_Saha_IMBA_ID722_onbead_dig_5per_control_1A_N2_A.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20220512_E3_RSLC1_Jelenic_Saha_IMBA_ID722_onbead_dig_5per_control_1B_N2_B	proteomic profiling by mass spectrometry	20220512_E3_RSLC1_Jelenic_Saha_IMBA_ID722_onbead_dig_5per_control_1B_N2_B.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20220512_E3_RSLC1_Jelenic_Saha_IMBA_ID722_onbead_dig_5per_control_1C_N2_C	proteomic profiling by mass spectrometry	20220512_E3_RSLC1_Jelenic_Saha_IMBA_ID722_onbead_dig_5per_control_1C_N2_C.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20220512_E3_RSLC1_Jelenic_Saha_IMBA_ID722_onbead_dig_5per_sample_2A_SS106_WT_A	proteomic profiling by mass spectrometry	20220512_E3_RSLC1_Jelenic_Saha_IMBA_ID722_onbead_dig_5per_sample_2A_SS106_WT_A.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20220512_E3_RSLC1_Jelenic_Saha_IMBA_ID722_onbead_dig_5per_sample_2B_SS106_WT_B	proteomic profiling by mass spectrometry	20220512_E3_RSLC1_Jelenic_Saha_IMBA_ID722_onbead_dig_5per_sample_2B_SS106_WT_B.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20220512_E3_RSLC1_Jelenic_Saha_IMBA_ID722_onbead_dig_5per_sample_2C_SS106_WT_C	proteomic profiling by mass spectrometry	20220512_E3_RSLC1_Jelenic_Saha_IMBA_ID722_onbead_dig_5per_sample_2C_SS106_WT_C.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20220512_E3_RSLC1_Jelenic_Saha_IMBA_ID722_onbead_dig_5per_sample_3A_SS107b_3xFG_A	proteomic profiling by mass spectrometry	20220512_E3_RSLC1_Jelenic_Saha_IMBA_ID722_onbead_dig_5per_sample_3A_SS107b_3xFG_A.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20220512_E3_RSLC1_Jelenic_Saha_IMBA_ID722_onbead_dig_5per_sample_3B_SS107b_3xFG_B	proteomic profiling by mass spectrometry	20220512_E3_RSLC1_Jelenic_Saha_IMBA_ID722_onbead_dig_5per_sample_3B_SS107b_3xFG_B.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20220512_E3_RSLC1_Jelenic_Saha_IMBA_ID722_onbead_dig_5per_sample_3C_SS107b_3xFG_C	proteomic profiling by mass spectrometry	20220512_E3_RSLC1_Jelenic_Saha_IMBA_ID722_onbead_dig_5per_sample_3C_SS107b_3xFG_C.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20220729_E2_RSLC2_Jelenic_Saha_IMBA_onbead_try_dig_5per_control_N2_1A	proteomic profiling by mass spectrometry	20220729_E2_RSLC2_Jelenic_Saha_IMBA_onbead_try_dig_5per_control_N2_1A.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20220729_E2_RSLC2_Jelenic_Saha_IMBA_onbead_try_dig_5per_control_N2_1B	proteomic profiling by mass spectrometry	20220729_E2_RSLC2_Jelenic_Saha_IMBA_onbead_try_dig_5per_control_N2_1B.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20220729_E2_RSLC2_Jelenic_Saha_IMBA_onbead_try_dig_5per_control_N2_1C	proteomic profiling by mass spectrometry	20220729_E2_RSLC2_Jelenic_Saha_IMBA_onbead_try_dig_5per_control_N2_1C.raw	1	12	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20220729_E2_RSLC2_Jelenic_Saha_IMBA_onbead_try_dig_5per_sample_SS106_WT_2A	proteomic profiling by mass spectrometry	20220729_E2_RSLC2_Jelenic_Saha_IMBA_onbead_try_dig_5per_sample_SS106_WT_2A.raw	1	13	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20220729_E2_RSLC2_Jelenic_Saha_IMBA_onbead_try_dig_5per_sample_SS106_WT_2B	proteomic profiling by mass spectrometry	20220729_E2_RSLC2_Jelenic_Saha_IMBA_onbead_try_dig_5per_sample_SS106_WT_2B.raw	1	14	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20220729_E2_RSLC2_Jelenic_Saha_IMBA_onbead_try_dig_5per_sample_SS106_WT_2C	proteomic profiling by mass spectrometry	20220729_E2_RSLC2_Jelenic_Saha_IMBA_onbead_try_dig_5per_sample_SS106_WT_2C.raw	1	15	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20220729_E2_RSLC2_Jelenic_Saha_IMBA_onbead_try_dig_5per_sample_SS107b_3xFG_3A	proteomic profiling by mass spectrometry	20220729_E2_RSLC2_Jelenic_Saha_IMBA_onbead_try_dig_5per_sample_SS107b_3xFG_3A.raw	1	16	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20220729_E2_RSLC2_Jelenic_Saha_IMBA_onbead_try_dig_5per_sample_SS107b_3xFG_3B	proteomic profiling by mass spectrometry	20220729_E2_RSLC2_Jelenic_Saha_IMBA_onbead_try_dig_5per_sample_SS107b_3xFG_3B.raw	1	17	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20220729_E2_RSLC2_Jelenic_Saha_IMBA_onbead_try_dig_5per_sample_SS107b_3xFG_3C	proteomic profiling by mass spectrometry	20220729_E2_RSLC2_Jelenic_Saha_IMBA_onbead_try_dig_5per_sample_SS107b_3xFG_3C.raw	1	18	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20221024_E1_RSLC5_Jelenic_Saha_IMBA_ID936_insol__1ug_2A	proteomic profiling by mass spectrometry	20221024_E1_RSLC5_Jelenic_Saha_IMBA_ID936_insol__1ug_2A.raw	1	19	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20221024_E1_RSLC5_Jelenic_Saha_IMBA_ID936_insol__1ug_2B	proteomic profiling by mass spectrometry	20221024_E1_RSLC5_Jelenic_Saha_IMBA_ID936_insol__1ug_2B.raw	1	20	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20221024_E1_RSLC5_Jelenic_Saha_IMBA_ID936_insol__1ug_2C	proteomic profiling by mass spectrometry	20221024_E1_RSLC5_Jelenic_Saha_IMBA_ID936_insol__1ug_2C.raw	1	21	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20221024_E1_RSLC5_Jelenic_Saha_IMBA_ID936_insol__1ug_3A	proteomic profiling by mass spectrometry	20221024_E1_RSLC5_Jelenic_Saha_IMBA_ID936_insol__1ug_3A.raw	1	22	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20221024_E1_RSLC5_Jelenic_Saha_IMBA_ID936_insol__1ug_3B	proteomic profiling by mass spectrometry	20221024_E1_RSLC5_Jelenic_Saha_IMBA_ID936_insol__1ug_3B.raw	1	23	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20221024_E1_RSLC5_Jelenic_Saha_IMBA_ID936_insol__1ug_3C	proteomic profiling by mass spectrometry	20221024_E1_RSLC5_Jelenic_Saha_IMBA_ID936_insol__1ug_3C.raw	1	24	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20230224_E2_RSLC2_Jelenic_Saha_IMBA_ID1085_LFQ_iST_1ug_control_2A_106_WT_1	proteomic profiling by mass spectrometry	20230224_E2_RSLC2_Jelenic_Saha_IMBA_ID1085_LFQ_iST_1ug_control_2A_106_WT_1.raw	1	25	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20230224_E2_RSLC2_Jelenic_Saha_IMBA_ID1085_LFQ_iST_1ug_control_2B_106_WT_2	proteomic profiling by mass spectrometry	20230224_E2_RSLC2_Jelenic_Saha_IMBA_ID1085_LFQ_iST_1ug_control_2B_106_WT_2.raw	1	26	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20230224_E2_RSLC2_Jelenic_Saha_IMBA_ID1085_LFQ_iST_1ug_control_2C_106_WT_3	proteomic profiling by mass spectrometry	20230224_E2_RSLC2_Jelenic_Saha_IMBA_ID1085_LFQ_iST_1ug_control_2C_106_WT_3.raw	1	27	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20230224_E2_RSLC2_Jelenic_Saha_IMBA_ID1085_LFQ_iST_1ug_sample_3A_107_3XFG_1	proteomic profiling by mass spectrometry	20230224_E2_RSLC2_Jelenic_Saha_IMBA_ID1085_LFQ_iST_1ug_sample_3A_107_3XFG_1.raw	1	28	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20230224_E2_RSLC2_Jelenic_Saha_IMBA_ID1085_LFQ_iST_1ug_sample_3B_107_3XFG_2	proteomic profiling by mass spectrometry	20230224_E2_RSLC2_Jelenic_Saha_IMBA_ID1085_LFQ_iST_1ug_sample_3B_107_3XFG_2.raw	1	29	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20230224_E2_RSLC2_Jelenic_Saha_IMBA_ID1085_LFQ_iST_1ug_sample_3C_107_3XFG_3	proteomic profiling by mass spectrometry	20230224_E2_RSLC2_Jelenic_Saha_IMBA_ID1085_LFQ_iST_1ug_sample_3C_107_3XFG_3.raw	1	30	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20231213_E3_Neo7_Jelenic_Saha_IMBA_id1452_LFQ_1ug_1A_SS200a_W4_KO_1	proteomic profiling by mass spectrometry	20231213_E3_Neo7_Jelenic_Saha_IMBA_id1452_LFQ_1ug_1A_SS200a_W4_KO_1.raw	1	31	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20231213_E3_Neo7_Jelenic_Saha_IMBA_id1452_LFQ_1ug_1B_SS200a_W4_KO_2	proteomic profiling by mass spectrometry	20231213_E3_Neo7_Jelenic_Saha_IMBA_id1452_LFQ_1ug_1B_SS200a_W4_KO_2.raw	1	32	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20231213_E3_Neo7_Jelenic_Saha_IMBA_id1452_LFQ_1ug_1C_SS200a_W4_KO_3	proteomic profiling by mass spectrometry	20231213_E3_Neo7_Jelenic_Saha_IMBA_id1452_LFQ_1ug_1C_SS200a_W4_KO_3.raw	1	33	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20231213_E3_Neo7_Jelenic_Saha_IMBA_id1452_LFQ_1ug_2A_N2_1	proteomic profiling by mass spectrometry	20231213_E3_Neo7_Jelenic_Saha_IMBA_id1452_LFQ_1ug_2A_N2_1.raw	1	34	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20231213_E3_Neo7_Jelenic_Saha_IMBA_id1452_LFQ_1ug_2B_N2_2	proteomic profiling by mass spectrometry	20231213_E3_Neo7_Jelenic_Saha_IMBA_id1452_LFQ_1ug_2B_N2_2.raw	1	35	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20231213_E3_Neo7_Jelenic_Saha_IMBA_id1452_LFQ_1ug_2C_N2_3	proteomic profiling by mass spectrometry	20231213_E3_Neo7_Jelenic_Saha_IMBA_id1452_LFQ_1ug_2C_N2_3.raw	1	36	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20240119_Eclipse_RSLC3_Jelenic_Saha_IMBA_id1452_FAIMS-sPRM_500ng_N2_1	proteomic profiling by mass spectrometry	20240119_Eclipse_RSLC3_Jelenic_Saha_IMBA_id1452_FAIMS-sPRM_500ng_N2_1.raw	1	37	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20240119_Eclipse_RSLC3_Jelenic_Saha_IMBA_id1452_FAIMS-sPRM_500ng_N2_2	proteomic profiling by mass spectrometry	20240119_Eclipse_RSLC3_Jelenic_Saha_IMBA_id1452_FAIMS-sPRM_500ng_N2_2.raw	1	38	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20240119_Eclipse_RSLC3_Jelenic_Saha_IMBA_id1452_FAIMS-sPRM_500ng_N2_3	proteomic profiling by mass spectrometry	20240119_Eclipse_RSLC3_Jelenic_Saha_IMBA_id1452_FAIMS-sPRM_500ng_N2_3.raw	1	39	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20240119_Eclipse_RSLC3_Jelenic_Saha_IMBA_id1452_FAIMS-sPRM_500ng_SS200a_W4_KO_1	proteomic profiling by mass spectrometry	20240119_Eclipse_RSLC3_Jelenic_Saha_IMBA_id1452_FAIMS-sPRM_500ng_SS200a_W4_KO_1.raw	1	40	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20240119_Eclipse_RSLC3_Jelenic_Saha_IMBA_id1452_FAIMS-sPRM_500ng_SS200a_W4_KO_2	proteomic profiling by mass spectrometry	20240119_Eclipse_RSLC3_Jelenic_Saha_IMBA_id1452_FAIMS-sPRM_500ng_SS200a_W4_KO_2.raw	1	41	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
+PXD062557-sample	caenorhabditis elegans	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	20240119_Eclipse_RSLC3_Jelenic_Saha_IMBA_id1452_FAIMS-sPRM_500ng_SS200a_W4_KO_3	proteomic profiling by mass spectrometry	20240119_Eclipse_RSLC3_Jelenic_Saha_IMBA_id1452_FAIMS-sPRM_500ng_SS200a_W4_KO_3.raw	1	42	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=invertebrates;VV=v1.1.0
diff --git a/datasets/PXD062741/PXD062741.sdrf.tsv b/datasets/PXD062741/PXD062741.sdrf.tsv
new file mode 100644
index 000000000..28fadddd2
--- /dev/null
+++ b/datasets/PXD062741/PXD062741.sdrf.tsv
@@ -0,0 +1,45 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[developmental stage]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	72498txt.rar	proteomic profiling by mass spectrometry	72498txt.rar	1	1	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	73501txt.rar	proteomic profiling by mass spectrometry	73501txt.rar	1	2	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	87976.rar	proteomic profiling by mass spectrometry	87976.rar	1	3	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq72498_QE3	proteomic profiling by mass spectrometry	Seq72498_QE3.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq72499_QE3	proteomic profiling by mass spectrometry	Seq72499_QE3.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq72500_QE3	proteomic profiling by mass spectrometry	Seq72500_QE3.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq72501_QE3	proteomic profiling by mass spectrometry	Seq72501_QE3.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq72502_QE3	proteomic profiling by mass spectrometry	Seq72502_QE3.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq72503_QE3	proteomic profiling by mass spectrometry	Seq72503_QE3.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq72504_QE3	proteomic profiling by mass spectrometry	Seq72504_QE3.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq72505_QE3	proteomic profiling by mass spectrometry	Seq72505_QE3.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq72506_QE3	proteomic profiling by mass spectrometry	Seq72506_QE3.raw	1	12	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq72507_QE3	proteomic profiling by mass spectrometry	Seq72507_QE3.raw	1	13	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq72508_QE3	proteomic profiling by mass spectrometry	Seq72508_QE3.raw	1	14	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq72509_QE3	proteomic profiling by mass spectrometry	Seq72509_QE3.raw	1	15	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq72510_QE3	proteomic profiling by mass spectrometry	Seq72510_QE3.raw	1	16	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq72511_QE3	proteomic profiling by mass spectrometry	Seq72511_QE3.raw	1	17	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq72512_QE3	proteomic profiling by mass spectrometry	Seq72512_QE3.raw	1	18	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq72513_QE3	proteomic profiling by mass spectrometry	Seq72513_QE3.raw	1	19	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq72514_QE3	proteomic profiling by mass spectrometry	Seq72514_QE3.raw	1	20	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq72515_QE3	proteomic profiling by mass spectrometry	Seq72515_QE3.raw	1	21	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq72516_QE3	proteomic profiling by mass spectrometry	Seq72516_QE3.raw	1	22	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq73501_QE3	proteomic profiling by mass spectrometry	Seq73501_QE3.raw	1	23	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq73502_QE3	proteomic profiling by mass spectrometry	Seq73502_QE3.raw	1	24	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq73503_QE3	proteomic profiling by mass spectrometry	Seq73503_QE3.raw	1	25	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq73504_QE3	proteomic profiling by mass spectrometry	Seq73504_QE3.raw	1	26	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq73505_QE3	proteomic profiling by mass spectrometry	Seq73505_QE3.raw	1	27	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq73506_QE3	proteomic profiling by mass spectrometry	Seq73506_QE3.raw	1	28	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq73507_QE3	proteomic profiling by mass spectrometry	Seq73507_QE3.raw	1	29	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq73508_QE3	proteomic profiling by mass spectrometry	Seq73508_QE3.raw	1	30	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq73509_QE3	proteomic profiling by mass spectrometry	Seq73509_QE3.raw	1	31	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq73510_QE3	proteomic profiling by mass spectrometry	Seq73510_QE3.raw	1	32	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq73511_QE3	proteomic profiling by mass spectrometry	Seq73511_QE3.raw	1	33	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq73512_QE3	proteomic profiling by mass spectrometry	Seq73512_QE3.raw	1	34	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq87976_chymo_DIA_480Ex2	proteomic profiling by mass spectrometry	Seq87976_chymo_DIA_480Ex2.raw	1	35	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq87977_chymo_DIA_480Ex2	proteomic profiling by mass spectrometry	Seq87977_chymo_DIA_480Ex2.raw	1	36	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq87978_chymo_DIA_480Ex2	proteomic profiling by mass spectrometry	Seq87978_chymo_DIA_480Ex2.raw	1	37	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq87979_chymo_DIA_480Ex2	proteomic profiling by mass spectrometry	Seq87979_chymo_DIA_480Ex2.raw	1	38	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq87980_chymo_DIA_480Ex2	proteomic profiling by mass spectrometry	Seq87980_chymo_DIA_480Ex2.raw	1	39	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq87981_chymo_DIA_480Ex2	proteomic profiling by mass spectrometry	Seq87981_chymo_DIA_480Ex2.raw	1	40	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq87982_chymo_DIA_480Ex2	proteomic profiling by mass spectrometry	Seq87982_chymo_DIA_480Ex2.raw	1	41	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq87983_chymo_DIA_480Ex2	proteomic profiling by mass spectrometry	Seq87983_chymo_DIA_480Ex2.raw	1	42	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Seq87984_chymo_DIA_480Ex2	proteomic profiling by mass spectrometry	Seq87984_chymo_DIA_480Ex2.raw	1	43	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD062741-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	checksum.txt	proteomic profiling by mass spectrometry	checksum.txt	1	44	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
diff --git a/datasets/PXD062870/PXD062870.sdrf.tsv b/datasets/PXD062870/PXD062870.sdrf.tsv
new file mode 100644
index 000000000..7df49b43c
--- /dev/null
+++ b/datasets/PXD062870/PXD062870.sdrf.tsv
@@ -0,0 +1,9 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD062870-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	VH20240715_KN_Ting_LaccaseID_FXN01	proteomic profiling by mass spectrometry	VH20240715_KN_Ting_LaccaseID_FXN01.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062870-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	VH20240715_KN_Ting_LaccaseID_FXN02	proteomic profiling by mass spectrometry	VH20240715_KN_Ting_LaccaseID_FXN02.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062870-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	VH20240715_KN_Ting_LaccaseID_FXN03	proteomic profiling by mass spectrometry	VH20240715_KN_Ting_LaccaseID_FXN03.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062870-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	VH20240715_KN_Ting_LaccaseID_FXN04	proteomic profiling by mass spectrometry	VH20240715_KN_Ting_LaccaseID_FXN04.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062870-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	VH20240715_KN_Ting_LaccaseID_FXN05	proteomic profiling by mass spectrometry	VH20240715_KN_Ting_LaccaseID_FXN05.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062870-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	VH20240715_KN_Ting_LaccaseID_FXN06	proteomic profiling by mass spectrometry	VH20240715_KN_Ting_LaccaseID_FXN06.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062870-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	VH20240715_KN_Ting_LaccaseID_FXN07	proteomic profiling by mass spectrometry	VH20240715_KN_Ting_LaccaseID_FXN07.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD062870-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	VH20240715_KN_Ting_LaccaseID_FXN08	proteomic profiling by mass spectrometry	VH20240715_KN_Ting_LaccaseID_FXN08.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD063033/PXD063033.sdrf.tsv b/datasets/PXD063033/PXD063033.sdrf.tsv
new file mode 100644
index 000000000..5db020420
--- /dev/null
+++ b/datasets/PXD063033/PXD063033.sdrf.tsv
@@ -0,0 +1,29 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	24224_Ecl01_Anton_BS3_XL_TRAP_50cm_65min_BSA_hetero_1	proteomic profiling by mass spectrometry	24224_Ecl01_Anton_BS3_XL_TRAP_50cm_65min_BSA_hetero_1.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	24224_Ecl01_Anton_BS3_XL_TRAP_50cm_65min_BSA_hetero_1.zhrm	proteomic profiling by mass spectrometry	24224_Ecl01_Anton_BS3_XL_TRAP_50cm_65min_BSA_hetero_1.zhrm	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	24224_Ecl01_Anton_BS3_XL_TRAP_50cm_65min_BSA_hetero_2	proteomic profiling by mass spectrometry	24224_Ecl01_Anton_BS3_XL_TRAP_50cm_65min_BSA_hetero_2.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	24224_Ecl01_Anton_BS3_XL_TRAP_50cm_65min_BSA_hetero_2.zhrm	proteomic profiling by mass spectrometry	24224_Ecl01_Anton_BS3_XL_TRAP_50cm_65min_BSA_hetero_2.zhrm	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	24224_Ecl_DDA_IT500_TRAP_50cm_100ng_65min_BSA_oNBA_Methoxy_2	proteomic profiling by mass spectrometry	24224_Ecl_DDA_IT500_TRAP_50cm_100ng_65min_BSA_oNBA_Methoxy_2.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	24224_Ecl_DDA_IT500_TRAP_50cm_100ng_65min_BSA_oNBA_Methoxy_3	proteomic profiling by mass spectrometry	24224_Ecl_DDA_IT500_TRAP_50cm_100ng_65min_BSA_oNBA_Methoxy_3.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	24224_Ecl_DDA_IT500_TRAP_50cm_100ng_65min_BSA_oNBA_methoxy_1	proteomic profiling by mass spectrometry	24224_Ecl_DDA_IT500_TRAP_50cm_100ng_65min_BSA_oNBA_methoxy_1.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	24224_Ecl_DDA_IT500_TRAP_50cm_100ng_95min_BSA_oNBA_1	proteomic profiling by mass spectrometry	24224_Ecl_DDA_IT500_TRAP_50cm_100ng_95min_BSA_oNBA_1.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	24224_Ecl_DDA_IT500_TRAP_50cm_100ng_95min_BSA_oNBA_2	proteomic profiling by mass spectrometry	24224_Ecl_DDA_IT500_TRAP_50cm_100ng_95min_BSA_oNBA_2.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	24224_Ecl_DDA_IT500_TRAP_50cm_100ng_95min_BSA_oNBA_3	proteomic profiling by mass spectrometry	24224_Ecl_DDA_IT500_TRAP_50cm_100ng_95min_BSA_oNBA_3.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_BSA_Hetero_3	proteomic profiling by mass spectrometry	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_BSA_Hetero_3.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_BSA_Hetero_3.zhrm	proteomic profiling by mass spectrometry	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_BSA_Hetero_3.zhrm	1	12	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_BSA_Homo	proteomic profiling by mass spectrometry	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_BSA_Homo.raw	1	13	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_BSA_Homo.zhrm	proteomic profiling by mass spectrometry	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_BSA_Homo.zhrm	1	14	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_BSA_Homo_2	proteomic profiling by mass spectrometry	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_BSA_Homo_2.raw	1	15	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_BSA_Homo_2.zhrm	proteomic profiling by mass spectrometry	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_BSA_Homo_2.zhrm	1	16	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_BSA_Homo_3	proteomic profiling by mass spectrometry	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_BSA_Homo_3.raw	1	17	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_BSA_Homo_3.zhrm	proteomic profiling by mass spectrometry	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_BSA_Homo_3.zhrm	1	18	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_SurAOmpX_Hetero_paper	proteomic profiling by mass spectrometry	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_SurAOmpX_Hetero_paper.raw	1	19	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_SurAOmpX_Hetero_paper.zhrm	proteomic profiling by mass spectrometry	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_SurAOmpX_Hetero_paper.zhrm	1	20	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_SurAOmpX_Homo_paper	proteomic profiling by mass spectrometry	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_SurAOmpX_Homo_paper.raw	1	21	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_SurAOmpX_Homo_paper.zhrm	proteomic profiling by mass spectrometry	25001_Ecl01_Adam_BS3_XL_TRAP_50cm_65min_SurAOmpX_Homo_paper.zhrm	1	22	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	BSA_labelled_cyclic_amideoNBA.zip	proteomic profiling by mass spectrometry	BSA_labelled_cyclic_amideoNBA.zip	1	23	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	BSA_labelled_cyclic_methoxyoNBA.zip	proteomic profiling by mass spectrometry	BSA_labelled_cyclic_methoxyoNBA.zip	1	24	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	BSA_labelled_reduced_immine_methoxyoNBA.zip	proteomic profiling by mass spectrometry	BSA_labelled_reduced_immine_methoxyoNBA.zip	1	25	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	BSA_labelled_reduced_immine_oNBAamide.zip	proteomic profiling by mass spectrometry	BSA_labelled_reduced_immine_oNBAamide.zip	1	26	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	SurAOmpX_Hetero_all_dead_ends.zip	proteomic profiling by mass spectrometry	SurAOmpX_Hetero_all_dead_ends.zip	1	27	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063033-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	SurAOmpX_Homo_all_dead_ends.zip	proteomic profiling by mass spectrometry	SurAOmpX_Homo_all_dead_ends.zip	1	28	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
diff --git a/datasets/PXD063145/PXD063145.sdrf.tsv b/datasets/PXD063145/PXD063145.sdrf.tsv
new file mode 100644
index 000000000..ff90341ca
--- /dev/null
+++ b/datasets/PXD063145/PXD063145.sdrf.tsv
@@ -0,0 +1,58 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[developmental stage]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GLP1APPLE293T.rar	proteomic profiling by mass spectrometry	GLP1APPLE293T.rar	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GLP1APPLE293T1Experimentalgroup	proteomic profiling by mass spectrometry	GLP1APPLE293T1Experimentalgroup.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GLP1APPLE293T2Experimentalgroup	proteomic profiling by mass spectrometry	GLP1APPLE293T2Experimentalgroup.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GLP1APPLE293T3Experimentalgroup	proteomic profiling by mass spectrometry	GLP1APPLE293T3Experimentalgroup.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GLP1APPLE293T4Controlgroup	proteomic profiling by mass spectrometry	GLP1APPLE293T4Controlgroup.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GLP1APPLE293T5Controlgroup	proteomic profiling by mass spectrometry	GLP1APPLE293T5Controlgroup.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GLP1APPLE293T6Controlgroup	proteomic profiling by mass spectrometry	GLP1APPLE293T6Controlgroup.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GLP1APPLEINS1E.rar	proteomic profiling by mass spectrometry	GLP1APPLEINS1E.rar	1	8	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GLP1APPLEINS1E1Experimentalgroup	proteomic profiling by mass spectrometry	GLP1APPLEINS1E1Experimentalgroup.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GLP1APPLEINS1E2Experimentalgroup	proteomic profiling by mass spectrometry	GLP1APPLEINS1E2Experimentalgroup.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GLP1APPLEINS1E3Controlgroup	proteomic profiling by mass spectrometry	GLP1APPLEINS1E3Controlgroup.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	GLP1APPLEINS1E4Controlgroup	proteomic profiling by mass spectrometry	GLP1APPLEINS1E4Controlgroup.raw	1	12	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BAPMS.rar	proteomic profiling by mass spectrometry	ORF9BAPMS.rar	1	13	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BAPMS1Experimental	proteomic profiling by mass spectrometry	ORF9BAPMS1Experimental.raw	1	14	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BAPMS2Experimental	proteomic profiling by mass spectrometry	ORF9BAPMS2Experimental.raw	1	15	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BAPMS3Experimental	proteomic profiling by mass spectrometry	ORF9BAPMS3Experimental.raw	1	16	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BAPMS4Control	proteomic profiling by mass spectrometry	ORF9BAPMS4Control.raw	1	17	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BAPMS5Control	proteomic profiling by mass spectrometry	ORF9BAPMS5Control.raw	1	18	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BAPMS6Control	proteomic profiling by mass spectrometry	ORF9BAPMS6Control.raw	1	19	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BAPPLE1Experimentalgroup	proteomic profiling by mass spectrometry	ORF9BAPPLE1Experimentalgroup.raw	1	20	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BAPPLE2Experimentalgroup	proteomic profiling by mass spectrometry	ORF9BAPPLE2Experimentalgroup.raw	1	21	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BAPPLE3Experimentalgroup	proteomic profiling by mass spectrometry	ORF9BAPPLE3Experimentalgroup.raw	1	22	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BAPPLE4Controlgroup	proteomic profiling by mass spectrometry	ORF9BAPPLE4Controlgroup.raw	1	23	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BAPPLE5Controlgroup	proteomic profiling by mass spectrometry	ORF9BAPPLE5Controlgroup.raw	1	24	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BAPPLE6Controlgroup	proteomic profiling by mass spectrometry	ORF9BAPPLE6Controlgroup.raw	1	25	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BAPPLEtxt.rar	proteomic profiling by mass spectrometry	ORF9BAPPLEtxt.rar	1	26	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BPOLY12h1	proteomic profiling by mass spectrometry	ORF9BPOLY12h1.raw	1	27	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BPOLY12h2	proteomic profiling by mass spectrometry	ORF9BPOLY12h2.raw	1	28	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BPOLY12h3	proteomic profiling by mass spectrometry	ORF9BPOLY12h3.raw	1	29	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BPOLY18h1	proteomic profiling by mass spectrometry	ORF9BPOLY18h1.raw	1	30	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BPOLY18h2	proteomic profiling by mass spectrometry	ORF9BPOLY18h2.raw	1	31	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BPOLY18h3	proteomic profiling by mass spectrometry	ORF9BPOLY18h3.raw	1	32	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BPOLY24h1	proteomic profiling by mass spectrometry	ORF9BPOLY24h1.raw	1	33	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BPOLY24h2	proteomic profiling by mass spectrometry	ORF9BPOLY24h2.raw	1	34	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BPOLY24h3	proteomic profiling by mass spectrometry	ORF9BPOLY24h3.raw	1	35	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BPOLY6h1	proteomic profiling by mass spectrometry	ORF9BPOLY6h1.raw	1	36	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BPOLY6h2	proteomic profiling by mass spectrometry	ORF9BPOLY6h2.raw	1	37	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BPOLY6h3	proteomic profiling by mass spectrometry	ORF9BPOLY6h3.raw	1	38	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BPOLYCONTROL1	proteomic profiling by mass spectrometry	ORF9BPOLYCONTROL1.raw	1	39	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BPOLYCONTROL2	proteomic profiling by mass spectrometry	ORF9BPOLYCONTROL2.raw	1	40	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BPOLYCONTROL3	proteomic profiling by mass spectrometry	ORF9BPOLYCONTROL3.raw	1	41	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ORF9BPolyIC.rar	proteomic profiling by mass spectrometry	ORF9BPolyIC.rar	1	42	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	PIN1AP-MS.rar	proteomic profiling by mass spectrometry	PIN1AP-MS.rar	1	43	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	PIN1APMS1Experimentalgroup	proteomic profiling by mass spectrometry	PIN1APMS1Experimentalgroup.raw	1	44	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	PIN1APMS2Experimentalgroup	proteomic profiling by mass spectrometry	PIN1APMS2Experimentalgroup.raw	1	45	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	PIN1APMS3Experimentalgroup	proteomic profiling by mass spectrometry	PIN1APMS3Experimentalgroup.raw	1	46	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	PIN1APMS4Controlgroup	proteomic profiling by mass spectrometry	PIN1APMS4Controlgroup.raw	1	47	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	PIN1APMS5Controlgroup	proteomic profiling by mass spectrometry	PIN1APMS5Controlgroup.raw	1	48	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	PIN1APMS6Controlgroup	proteomic profiling by mass spectrometry	PIN1APMS6Controlgroup.raw	1	49	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	PIN1APPLE-MS.rar	proteomic profiling by mass spectrometry	PIN1APPLE-MS.rar	1	50	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	PIN1APPLE1Experimentalgroup	proteomic profiling by mass spectrometry	PIN1APPLE1Experimentalgroup.raw	1	51	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	PIN1APPLE2Experimentalgroup	proteomic profiling by mass spectrometry	PIN1APPLE2Experimentalgroup.raw	1	52	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	PIN1APPLE3Experimentalgroup	proteomic profiling by mass spectrometry	PIN1APPLE3Experimentalgroup.raw	1	53	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	PIN1APPLE4Controlgroup	proteomic profiling by mass spectrometry	PIN1APPLE4Controlgroup.raw	1	54	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	PIN1APPLE5Controlgroup	proteomic profiling by mass spectrometry	PIN1APPLE5Controlgroup.raw	1	55	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	PIN1APPLE6Controlgroup	proteomic profiling by mass spectrometry	PIN1APPLE6Controlgroup.raw	1	56	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063145-sample	rattus norvegicus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	checksum.txt	proteomic profiling by mass spectrometry	checksum.txt	1	57	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
diff --git a/datasets/PXD063191/PXD063191.sdrf.tsv b/datasets/PXD063191/PXD063191.sdrf.tsv
new file mode 100644
index 000000000..52bf4f5f5
--- /dev/null
+++ b/datasets/PXD063191/PXD063191.sdrf.tsv
@@ -0,0 +1,22 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_10_F1	proteomic profiling by mass spectrometry	PR702_KY1_10_F1.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_11_F2	proteomic profiling by mass spectrometry	PR702_KY1_11_F2.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_12_F3	proteomic profiling by mass spectrometry	PR702_KY1_12_F3.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_13_M1	proteomic profiling by mass spectrometry	PR702_KY1_13_M1.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_14_M2	proteomic profiling by mass spectrometry	PR702_KY1_14_M2.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_15_M3	proteomic profiling by mass spectrometry	PR702_KY1_15_M3.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_16_N1	proteomic profiling by mass spectrometry	PR702_KY1_16_N1.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_17_N2	proteomic profiling by mass spectrometry	PR702_KY1_17_N2.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_18_N3	proteomic profiling by mass spectrometry	PR702_KY1_18_N3.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_19_S1	proteomic profiling by mass spectrometry	PR702_KY1_19_S1.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_1_G1	proteomic profiling by mass spectrometry	PR702_KY1_1_G1.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_20_S2	proteomic profiling by mass spectrometry	PR702_KY1_20_S2.raw	1	12	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_21_S3	proteomic profiling by mass spectrometry	PR702_KY1_21_S3.raw	1	13	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_2_G2	proteomic profiling by mass spectrometry	PR702_KY1_2_G2.raw	1	14	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_3_G3	proteomic profiling by mass spectrometry	PR702_KY1_3_G3.raw	1	15	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_4_A1	proteomic profiling by mass spectrometry	PR702_KY1_4_A1.raw	1	16	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_5_A2	proteomic profiling by mass spectrometry	PR702_KY1_5_A2.raw	1	17	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_6_A3	proteomic profiling by mass spectrometry	PR702_KY1_6_A3.raw	1	18	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_7_C1	proteomic profiling by mass spectrometry	PR702_KY1_7_C1.raw	1	19	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_8_C2	proteomic profiling by mass spectrometry	PR702_KY1_8_C2.raw	1	20	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063191-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR702_KY1_9_C3	proteomic profiling by mass spectrometry	PR702_KY1_9_C3.raw	1	21	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD063192/PXD063192.sdrf.tsv b/datasets/PXD063192/PXD063192.sdrf.tsv
new file mode 100644
index 000000000..4c4cbc15c
--- /dev/null
+++ b/datasets/PXD063192/PXD063192.sdrf.tsv
@@ -0,0 +1,13 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD063192-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR687_THC1_10_CS3_4	proteomic profiling by mass spectrometry	PR687_THC1_10_CS3_4.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063192-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR687_THC1_11_CS3_5	proteomic profiling by mass spectrometry	PR687_THC1_11_CS3_5.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063192-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR687_THC1_12_CS3_6	proteomic profiling by mass spectrometry	PR687_THC1_12_CS3_6.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063192-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR687_THC1_1_DN1	proteomic profiling by mass spectrometry	PR687_THC1_1_DN1.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063192-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR687_THC1_2_DN2	proteomic profiling by mass spectrometry	PR687_THC1_2_DN2.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063192-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR687_THC1_3_DN3	proteomic profiling by mass spectrometry	PR687_THC1_3_DN3.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063192-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR687_THC1_4_DN4	proteomic profiling by mass spectrometry	PR687_THC1_4_DN4.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063192-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR687_THC1_5_DN5	proteomic profiling by mass spectrometry	PR687_THC1_5_DN5.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063192-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR687_THC1_6_DN6	proteomic profiling by mass spectrometry	PR687_THC1_6_DN6.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063192-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR687_THC1_7_CS3_1	proteomic profiling by mass spectrometry	PR687_THC1_7_CS3_1.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063192-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR687_THC1_8_CS3_2	proteomic profiling by mass spectrometry	PR687_THC1_8_CS3_2.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063192-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PR687_THC1_9_CS3_3	proteomic profiling by mass spectrometry	PR687_THC1_9_CS3_3.raw	1	12	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD063709/PXD063709.sdrf.tsv b/datasets/PXD063709/PXD063709.sdrf.tsv
new file mode 100644
index 000000000..c7c307318
--- /dev/null
+++ b/datasets/PXD063709/PXD063709.sdrf.tsv
@@ -0,0 +1,2 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD063709-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	11.4 Å	not available	not available	20230051_WRS	proteomic profiling by mass spectrometry	20230051_WRS.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=EDC;AC=XLMOD:02009;CL=no;TA=K,D,E	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD063736/PXD063736.sdrf.tsv b/datasets/PXD063736/PXD063736.sdrf.tsv
new file mode 100644
index 000000000..817e89fc1
--- /dev/null
+++ b/datasets/PXD063736/PXD063736.sdrf.tsv
@@ -0,0 +1,11 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]
+PXD063736-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	22-327_YHJ1101_56	proteomic profiling by mass spectrometry	22-327_YHJ1101_56.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063736-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	22-327_YHJ1101_62	proteomic profiling by mass spectrometry	22-327_YHJ1101_62.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063736-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	22-361_YHJ1221_10	proteomic profiling by mass spectrometry	22-361_YHJ1221_10.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063736-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	22-361_YHJ1221_51-N10	proteomic profiling by mass spectrometry	22-361_YHJ1221_51-N10.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063736-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	22-361_YHJ1221_8	proteomic profiling by mass spectrometry	22-361_YHJ1221_8.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063736-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	23-049_YHJ0316_40	proteomic profiling by mass spectrometry	23-049_YHJ0316_40.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063736-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	23-049_YHJ0316_51-1	proteomic profiling by mass spectrometry	23-049_YHJ0316_51-1.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063736-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	23-049_YHJ0316_51-3	proteomic profiling by mass spectrometry	23-049_YHJ0316_51-3.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063736-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	Search.zip	proteomic profiling by mass spectrometry	Search.zip	1	9	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063736-sample	escherichia coli	not applicable	not applicable	not applicable	1	synthetic	reference	not available	not available	not available	not available	checksum.txt	proteomic profiling by mass spectrometry	checksum.txt	1	10	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
diff --git a/datasets/PXD063825/PXD063825.sdrf.tsv b/datasets/PXD063825/PXD063825.sdrf.tsv
new file mode 100644
index 000000000..226003125
--- /dev/null
+++ b/datasets/PXD063825/PXD063825.sdrf.tsv
@@ -0,0 +1,38 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[developmental stage]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20241219_01_AcSR8	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20241219_01_AcSR8.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20241219_08_AcSR8_TSTO5	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20241219_08_AcSR8_TSTO5.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20241219_09_AcSR8_TSTO15	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20241219_09_AcSR8_TSTO15.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20241219_10_AcSR8_TSTO30	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20241219_10_AcSR8_TSTO30.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20241219_11_AcSR8_TSTO60	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20241219_11_AcSR8_TSTO60.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250116_05_BSA_F2	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250116_05_BSA_F2.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250116_06_BSA_F3	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250116_06_BSA_F3.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250215_01_H1_F2_HpHt1	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250215_01_H1_F2_HpHt1.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250215_02_H1_F2_HpHt2	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250215_02_H1_F2_HpHt2.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250215_03_H1_F2_HpHt3	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250215_03_H1_F2_HpHt3.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250215_05_H1_F2_HpHt5	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250215_05_H1_F2_HpHt5.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250215_06_H1_F2_HpHt6	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250215_06_H1_F2_HpHt6.raw	1	12	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250215_09_H1_F3_HpHt2	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250215_09_H1_F3_HpHt2.raw	1	13	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250215_10_H1_F3_HpHt3	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250215_10_H1_F3_HpHt3.raw	1	14	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250215_11_H1_F3_HpHt4	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250215_11_H1_F3_HpHt4.raw	1	15	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250215_12_H1_F3_HpHt5	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250215_12_H1_F3_HpHt5.raw	1	16	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250215_13_H1_F3_HpHt6	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250215_13_H1_F3_HpHt6.raw	1	17	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250216_01_H2_F2_HpHt1	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250216_01_H2_F2_HpHt1.raw	1	18	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250216_02_H2_F2_HpHt2	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250216_02_H2_F2_HpHt2.raw	1	19	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250216_03_H2_F2_HpHt3	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250216_03_H2_F2_HpHt3.raw	1	20	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250216_04_H2_F2_HpHt4	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250216_04_H2_F2_HpHt4.raw	1	21	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250216_05_H2_F2_HpHt5	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250216_05_H2_F2_HpHt5.raw	1	22	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250216_06_H2_F2_HpHt6	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250216_06_H2_F2_HpHt6.raw	1	23	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250216_09_H2_F3_HpHt2	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250216_09_H2_F3_HpHt2.raw	1	24	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250216_11_H2_F3_HpHt4	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250216_11_H2_F3_HpHt4.raw	1	25	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250216_12_H2_F3_HpHt5	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250216_12_H2_F3_HpHt5.raw	1	26	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250217_01_H3_F2_HpHt1	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250217_01_H3_F2_HpHt1.raw	1	27	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250217_02_H3_F2_HpHt2	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250217_02_H3_F2_HpHt2.raw	1	28	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250217_03_H3_F2_HpHt3	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250217_03_H3_F2_HpHt3.raw	1	29	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250217_05_H3_F2_HpHt5	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250217_05_H3_F2_HpHt5.raw	1	30	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250217_06_H3_F2_HpHt6	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250217_06_H3_F2_HpHt6.raw	1	31	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250217_08_H3_F3_HpHt1	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250217_08_H3_F3_HpHt1.raw	1	32	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250217_09_H3_F3_HpHt2	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250217_09_H3_F3_HpHt2.raw	1	33	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250217_10_H3_F3_HpHt3	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250217_10_H3_F3_HpHt3.raw	1	34	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250217_11_H3_F3_HpHt4	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250217_11_H3_F3_HpHt4.raw	1	35	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250217_12_H3_F3_HpHt5	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250217_12_H3_F3_HpHt5.raw	1	36	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD063825-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	OrbitrapLUMOS_20250217_13_H3_F3_HpHt6	proteomic profiling by mass spectrometry	OrbitrapLUMOS_20250217_13_H3_F3_HpHt6.raw	1	37	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	ammonium	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
diff --git a/datasets/PXD063839/PXD063839.sdrf.tsv b/datasets/PXD063839/PXD063839.sdrf.tsv
new file mode 100644
index 000000000..d7bd848dc
--- /dev/null
+++ b/datasets/PXD063839/PXD063839.sdrf.tsv
@@ -0,0 +1,19 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[developmental stage]	characteristics[strain or breed]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]
+PXD063839-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	Athaliana_XL_LCMSMS_R1	proteomic profiling by mass spectrometry	Athaliana_XL_LCMSMS_R1.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063839-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	Athaliana_XL_LCMSMS_R2	proteomic profiling by mass spectrometry	Athaliana_XL_LCMSMS_R2.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063839-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	Athaliana_XL_LCMSMS_R3	proteomic profiling by mass spectrometry	Athaliana_XL_LCMSMS_R3.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063839-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	Bsubtilis_XL_LCMSMS_R1	proteomic profiling by mass spectrometry	Bsubtilis_XL_LCMSMS_R1.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063839-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	Bsubtilis_XL_LCMSMS_R2	proteomic profiling by mass spectrometry	Bsubtilis_XL_LCMSMS_R2.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063839-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	Bsubtilis_XL_LCMSMS_R3	proteomic profiling by mass spectrometry	Bsubtilis_XL_LCMSMS_R3.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063839-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	GrxC5_XL-LCMSMS_R1	proteomic profiling by mass spectrometry	GrxC5_XL-LCMSMS_R1.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063839-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	GrxC5_XL-LCMSMS_R2	proteomic profiling by mass spectrometry	GrxC5_XL-LCMSMS_R2.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063839-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	GrxC5_XL-LCMSMS_R3	proteomic profiling by mass spectrometry	GrxC5_XL-LCMSMS_R3.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063839-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	HEK_XL_LCMSMS_R1	proteomic profiling by mass spectrometry	HEK_XL_LCMSMS_R1.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063839-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	HEK_XL_LCMSMS_R2	proteomic profiling by mass spectrometry	HEK_XL_LCMSMS_R2.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063839-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	HEK_XL_LCMSMS_R3	proteomic profiling by mass spectrometry	HEK_XL_LCMSMS_R3.raw	1	12	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063839-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	K562_XL_LCMSMS_R1	proteomic profiling by mass spectrometry	K562_XL_LCMSMS_R1.raw	1	13	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063839-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	K562_XL_LCMSMS_R2	proteomic profiling by mass spectrometry	K562_XL_LCMSMS_R2.raw	1	14	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063839-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	K562_XL_LCMSMS_R3	proteomic profiling by mass spectrometry	K562_XL_LCMSMS_R3.raw	1	15	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063839-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	Scerevisiae_XL_LCMSMS_R1	proteomic profiling by mass spectrometry	Scerevisiae_XL_LCMSMS_R1.raw	1	16	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063839-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	Scerevisiae_XL_LCMSMS_R2	proteomic profiling by mass spectrometry	Scerevisiae_XL_LCMSMS_R2.raw	1	17	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD063839-sample	saccharomyces cerevisiae	not applicable	not applicable	not applicable	not available	not available	1	synthetic	reference	not available	not available	not available	not available	Scerevisiae_XL_LCMSMS_R3	proteomic profiling by mass spectrometry	Scerevisiae_XL_LCMSMS_R3.raw	1	18	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
diff --git a/datasets/PXD063858/PXD063858.sdrf.tsv b/datasets/PXD063858/PXD063858.sdrf.tsv
new file mode 100644
index 000000000..070863baf
--- /dev/null
+++ b/datasets/PXD063858/PXD063858.sdrf.tsv
@@ -0,0 +1,13 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD063858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	30 Å	not available	not available	20241018_FU_05_07	proteomic profiling by mass spectrometry	20241018_FU_05_07.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSS;AC=XLMOD:02001	not available	not available	and	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	30 Å	not available	not available	20241018_FU_05_08	proteomic profiling by mass spectrometry	20241018_FU_05_08.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSS;AC=XLMOD:02001	not available	not available	and	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	30 Å	not available	not available	20241018_FU_05_09	proteomic profiling by mass spectrometry	20241018_FU_05_09.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSS;AC=XLMOD:02001	not available	not available	and	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	30 Å	not available	not available	20241018_FU_05_11	proteomic profiling by mass spectrometry	20241018_FU_05_11.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSS;AC=XLMOD:02001	not available	not available	and	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	30 Å	not available	not available	20241018_FU_05_12	proteomic profiling by mass spectrometry	20241018_FU_05_12.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSS;AC=XLMOD:02001	not available	not available	and	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	30 Å	not available	not available	20241018_FU_05_13	proteomic profiling by mass spectrometry	20241018_FU_05_13.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSS;AC=XLMOD:02001	not available	not available	and	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	30 Å	not available	not available	20241018_FU_05_15	proteomic profiling by mass spectrometry	20241018_FU_05_15.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSS;AC=XLMOD:02001	not available	not available	and	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	30 Å	not available	not available	20241018_FU_05_16	proteomic profiling by mass spectrometry	20241018_FU_05_16.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSS;AC=XLMOD:02001	not available	not available	and	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	30 Å	not available	not available	20241018_FU_05_17	proteomic profiling by mass spectrometry	20241018_FU_05_17.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSS;AC=XLMOD:02001	not available	not available	and	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	30 Å	not available	not available	20241018_FU_05_19	proteomic profiling by mass spectrometry	20241018_FU_05_19.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSS;AC=XLMOD:02001	not available	not available	and	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	30 Å	not available	not available	20241018_FU_05_20	proteomic profiling by mass spectrometry	20241018_FU_05_20.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSS;AC=XLMOD:02001	not available	not available	and	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD063858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	30 Å	not available	not available	20241018_FU_05_21	proteomic profiling by mass spectrometry	20241018_FU_05_21.raw	1	12	AC=MS:1002038;NT=label free sample	NT=Q Exactive;AC=MS:1001911	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSS;AC=XLMOD:02001	not available	not available	and	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD063968/PXD063968.sdrf.tsv b/datasets/PXD063968/PXD063968.sdrf.tsv
new file mode 100644
index 000000000..a0db45b20
--- /dev/null
+++ b/datasets/PXD063968/PXD063968.sdrf.tsv
@@ -0,0 +1,2 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD063968-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	30 Å	not available	not available	20221025_HuangZixuan_HZX1	proteomic profiling by mass spectrometry	20221025_HuangZixuan_HZX1.raw	1	1	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap;AC=MS:1000449	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSS;AC=XLMOD:02001	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD064535/PXD064535.sdrf.tsv b/datasets/PXD064535/PXD064535.sdrf.tsv
new file mode 100644
index 000000000..30cdc6723
--- /dev/null
+++ b/datasets/PXD064535/PXD064535.sdrf.tsv
@@ -0,0 +1,19 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]
+PXD064535-sample	lyssavirus rabies	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	240715_SC-9057_CVS_P1_1	proteomic profiling by mass spectrometry	240715_SC-9057_CVS_P1_1.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Ascend;AC=MS:1003356	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD064535-sample	lyssavirus rabies	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	240715_SC-9057_CVS_P1_2	proteomic profiling by mass spectrometry	240715_SC-9057_CVS_P1_2.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Ascend;AC=MS:1003356	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD064535-sample	lyssavirus rabies	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	240715_SC-9057_CVS_P1_3	proteomic profiling by mass spectrometry	240715_SC-9057_CVS_P1_3.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Ascend;AC=MS:1003356	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD064535-sample	lyssavirus rabies	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	240715_SC-9057_CVS_P1_4	proteomic profiling by mass spectrometry	240715_SC-9057_CVS_P1_4.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Ascend;AC=MS:1003356	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD064535-sample	lyssavirus rabies	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	240715_SC-9057_CVS_P3_1	proteomic profiling by mass spectrometry	240715_SC-9057_CVS_P3_1.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Ascend;AC=MS:1003356	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD064535-sample	lyssavirus rabies	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	240715_SC-9057_CVS_P3_2	proteomic profiling by mass spectrometry	240715_SC-9057_CVS_P3_2.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Orbitrap Ascend;AC=MS:1003356	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD064535-sample	lyssavirus rabies	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	240715_SC-9057_CVS_P3_3	proteomic profiling by mass spectrometry	240715_SC-9057_CVS_P3_3.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Orbitrap Ascend;AC=MS:1003356	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD064535-sample	lyssavirus rabies	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	240715_SC-9057_CVS_P3_4	proteomic profiling by mass spectrometry	240715_SC-9057_CVS_P3_4.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Orbitrap Ascend;AC=MS:1003356	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD064535-sample	lyssavirus rabies	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	240715_SC-9057_CVS_P3_D289N_1	proteomic profiling by mass spectrometry	240715_SC-9057_CVS_P3_D289N_1.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Orbitrap Ascend;AC=MS:1003356	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD064535-sample	lyssavirus rabies	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	240715_SC-9057_CVS_P3_D289N_2	proteomic profiling by mass spectrometry	240715_SC-9057_CVS_P3_D289N_2.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Orbitrap Ascend;AC=MS:1003356	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD064535-sample	lyssavirus rabies	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	240715_SC-9057_CVS_P3_D289N_3	proteomic profiling by mass spectrometry	240715_SC-9057_CVS_P3_D289N_3.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Orbitrap Ascend;AC=MS:1003356	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD064535-sample	lyssavirus rabies	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	240715_SC-9057_CVS_P3_D289N_4	proteomic profiling by mass spectrometry	240715_SC-9057_CVS_P3_D289N_4.raw	1	12	AC=MS:1002038;NT=label free sample	NT=Orbitrap Ascend;AC=MS:1003356	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD064535-sample	lyssavirus rabies	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	240715_SC-9057_CVS_P3_KR_1	proteomic profiling by mass spectrometry	240715_SC-9057_CVS_P3_KR_1.raw	1	13	AC=MS:1002038;NT=label free sample	NT=Orbitrap Ascend;AC=MS:1003356	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD064535-sample	lyssavirus rabies	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	240715_SC-9057_CVS_P3_KR_2	proteomic profiling by mass spectrometry	240715_SC-9057_CVS_P3_KR_2.raw	1	14	AC=MS:1002038;NT=label free sample	NT=Orbitrap Ascend;AC=MS:1003356	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD064535-sample	lyssavirus rabies	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	240715_SC-9057_CVS_P3_KR_3	proteomic profiling by mass spectrometry	240715_SC-9057_CVS_P3_KR_3.raw	1	15	AC=MS:1002038;NT=label free sample	NT=Orbitrap Ascend;AC=MS:1003356	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD064535-sample	lyssavirus rabies	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	240715_SC-9057_CVS_P3_KR_4	proteomic profiling by mass spectrometry	240715_SC-9057_CVS_P3_KR_4.raw	1	16	AC=MS:1002038;NT=label free sample	NT=Orbitrap Ascend;AC=MS:1003356	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD064535-sample	lyssavirus rabies	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	240722_SC-9057_Shatabdi_CVS_V2.msf	proteomic profiling by mass spectrometry	240722_SC-9057_Shatabdi_CVS_V2.msf	1	17	AC=MS:1002038;NT=label free sample	NT=Orbitrap Ascend;AC=MS:1003356	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
+PXD064535-sample	lyssavirus rabies	not applicable	not applicable	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	checksum.txt	proteomic profiling by mass spectrometry	checksum.txt	1	18	AC=MS:1002038;NT=label free sample	NT=Orbitrap Ascend;AC=MS:1003356	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0
diff --git a/datasets/PXD064557/PXD064557.sdrf.tsv b/datasets/PXD064557/PXD064557.sdrf.tsv
new file mode 100644
index 000000000..0766d6566
--- /dev/null
+++ b/datasets/PXD064557/PXD064557.sdrf.tsv
@@ -0,0 +1,30 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_cytoSel_1_RC3_1_17877.d.zip	proteomic profiling by mass spectrometry	APEX_cytoSel_1_RC3_1_17877.d.zip	1	1	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_cytoSel_2_RC4_1_17878.d.zip	proteomic profiling by mass spectrometry	APEX_cytoSel_2_RC4_1_17878.d.zip	1	2	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_cytoSel_3_RC5_1_17879.d.zip	proteomic profiling by mass spectrometry	APEX_cytoSel_3_RC5_1_17879.d.zip	1	3	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_cytoSel_4_RC6_1_17880.d.zip	proteomic profiling by mass spectrometry	APEX_cytoSel_4_RC6_1_17880.d.zip	1	4	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_cytoV_1_RB3_1_17862.d.zip	proteomic profiling by mass spectrometry	APEX_cytoV_1_RB3_1_17862.d.zip	1	5	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_cytoV_2_RB4_1_17863.d.zip	proteomic profiling by mass spectrometry	APEX_cytoV_2_RB4_1_17863.d.zip	1	6	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_cytoV_3_RB5_1_17864.d.zip	proteomic profiling by mass spectrometry	APEX_cytoV_3_RB5_1_17864.d.zip	1	7	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_cytoV_4_RB6_1_17865.d.zip	proteomic profiling by mass spectrometry	APEX_cytoV_4_RB6_1_17865.d.zip	1	8	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_nf1Sel_1_RC11_1_17887.d.zip	proteomic profiling by mass spectrometry	APEX_nf1Sel_1_RC11_1_17887.d.zip	1	9	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_nf1Sel_2_RC12_1_17888.d.zip	proteomic profiling by mass spectrometry	APEX_nf1Sel_2_RC12_1_17888.d.zip	1	10	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_nf1Sel_3_RD1_1_17889.d.zip	proteomic profiling by mass spectrometry	APEX_nf1Sel_3_RD1_1_17889.d.zip	1	11	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_nf1Sel_4_RD2_1_17890.d.zip	proteomic profiling by mass spectrometry	APEX_nf1Sel_4_RD2_1_17890.d.zip	1	12	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_nf1V_1_RB11_1_17872.d.zip	proteomic profiling by mass spectrometry	APEX_nf1V_1_RB11_1_17872.d.zip	1	13	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_nf1V_2_RB12_1_17873.d.zip	proteomic profiling by mass spectrometry	APEX_nf1V_2_RB12_1_17873.d.zip	1	14	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_nf1V_3_RC1_1_17874.d.zip	proteomic profiling by mass spectrometry	APEX_nf1V_3_RC1_1_17874.d.zip	1	15	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_nf1V_4_RC2_1_17875.d.zip	proteomic profiling by mass spectrometry	APEX_nf1V_4_RC2_1_17875.d.zip	1	16	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_pmSel_1_RC7_1_17882.d.zip	proteomic profiling by mass spectrometry	APEX_pmSel_1_RC7_1_17882.d.zip	1	17	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_pmSel_2_RC8_1_17883.d.zip	proteomic profiling by mass spectrometry	APEX_pmSel_2_RC8_1_17883.d.zip	1	18	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_pmSel_3_RC9_1_17884.d.zip	proteomic profiling by mass spectrometry	APEX_pmSel_3_RC9_1_17884.d.zip	1	19	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_pmSel_4_RC10_1_17885.d.zip	proteomic profiling by mass spectrometry	APEX_pmSel_4_RC10_1_17885.d.zip	1	20	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_pmV_1_RB7_1_17867.d.zip	proteomic profiling by mass spectrometry	APEX_pmV_1_RB7_1_17867.d.zip	1	21	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_pmV_2_RB8_1_17868.d.zip	proteomic profiling by mass spectrometry	APEX_pmV_2_RB8_1_17868.d.zip	1	22	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_pmV_3_RB9_1_17869.d.zip	proteomic profiling by mass spectrometry	APEX_pmV_3_RB9_1_17869.d.zip	1	23	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_pmV_4_RB10_1_17870.d.zip	proteomic profiling by mass spectrometry	APEX_pmV_4_RB10_1_17870.d.zip	1	24	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_unlabeled_1_RA11_1_17857.d.zip	proteomic profiling by mass spectrometry	APEX_unlabeled_1_RA11_1_17857.d.zip	1	25	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_unlabeled_2_RA12_1_17858.d.zip	proteomic profiling by mass spectrometry	APEX_unlabeled_2_RA12_1_17858.d.zip	1	26	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_unlabeled_3_RB1_1_17859.d.zip	proteomic profiling by mass spectrometry	APEX_unlabeled_3_RB1_1_17859.d.zip	1	27	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	APEX_unlabeled_4_RB2_1_17860.d.zip	proteomic profiling by mass spectrometry	APEX_unlabeled_4_RB2_1_17860.d.zip	1	28	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064557-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	evidence.txt	proteomic profiling by mass spectrometry	evidence.txt	1	29	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro;AC=MS:1003005	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=APEX;AC=XLMOD:02252	not available	not available	solution	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD064792/PXD064792.sdrf.tsv b/datasets/PXD064792/PXD064792.sdrf.tsv
new file mode 100644
index 000000000..352f4c3e3
--- /dev/null
+++ b/datasets/PXD064792/PXD064792.sdrf.tsv
@@ -0,0 +1,33 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[developmental stage]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r1_BCOR_A_ITD_INPUT.mzXML	proteomic profiling by mass spectrometry	r1_BCOR_A_ITD_INPUT.mzXML	1	1	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r1_BCOR_A_ITD_INPUT	proteomic profiling by mass spectrometry	r1_BCOR_A_ITD_INPUT.raw	1	2	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r1_BCOR_A_ITD_IP.mzXML	proteomic profiling by mass spectrometry	r1_BCOR_A_ITD_IP.mzXML	1	3	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r1_BCOR_A_ITD_IP	proteomic profiling by mass spectrometry	r1_BCOR_A_ITD_IP.raw	1	4	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r1_BCOR_A_WT_INPUT.mzXML	proteomic profiling by mass spectrometry	r1_BCOR_A_WT_INPUT.mzXML	1	5	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r1_BCOR_A_WT_INPUTs	proteomic profiling by mass spectrometry	r1_BCOR_A_WT_INPUTs.raw	1	6	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r1_BCOR_A_WT_IP.mzXML	proteomic profiling by mass spectrometry	r1_BCOR_A_WT_IP.mzXML	1	7	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r1_BCOR_A_WT_IP	proteomic profiling by mass spectrometry	r1_BCOR_A_WT_IP.raw	1	8	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r1_BCOR_C_ITD_INPUT.mzXML	proteomic profiling by mass spectrometry	r1_BCOR_C_ITD_INPUT.mzXML	1	9	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r1_BCOR_C_ITD_INPUT	proteomic profiling by mass spectrometry	r1_BCOR_C_ITD_INPUT.raw	1	10	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r1_BCOR_C_ITD_IP.mzXML	proteomic profiling by mass spectrometry	r1_BCOR_C_ITD_IP.mzXML	1	11	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r1_BCOR_C_ITD_IP	proteomic profiling by mass spectrometry	r1_BCOR_C_ITD_IP.raw	1	12	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r1_BCOR_C_WT_INPUT.mzXML	proteomic profiling by mass spectrometry	r1_BCOR_C_WT_INPUT.mzXML	1	13	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r1_BCOR_C_WT_INPUT	proteomic profiling by mass spectrometry	r1_BCOR_C_WT_INPUT.raw	1	14	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r1_BCOR_C_WT_IP.mzXML	proteomic profiling by mass spectrometry	r1_BCOR_C_WT_IP.mzXML	1	15	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r1_BCOR_C_WT_IP	proteomic profiling by mass spectrometry	r1_BCOR_C_WT_IP.raw	1	16	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r2_BCOR_A_ITD_INPUT.mzXML	proteomic profiling by mass spectrometry	r2_BCOR_A_ITD_INPUT.mzXML	1	17	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r2_BCOR_A_ITD_INPUT	proteomic profiling by mass spectrometry	r2_BCOR_A_ITD_INPUT.raw	1	18	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r2_BCOR_A_ITD_IP.mzXML	proteomic profiling by mass spectrometry	r2_BCOR_A_ITD_IP.mzXML	1	19	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r2_BCOR_A_ITD_IP	proteomic profiling by mass spectrometry	r2_BCOR_A_ITD_IP.raw	1	20	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r2_BCOR_A_WT_INPUT.mzXML	proteomic profiling by mass spectrometry	r2_BCOR_A_WT_INPUT.mzXML	1	21	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r2_BCOR_A_WT_INPUT	proteomic profiling by mass spectrometry	r2_BCOR_A_WT_INPUT.raw	1	22	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r2_BCOR_A_WT_IP.mzXML	proteomic profiling by mass spectrometry	r2_BCOR_A_WT_IP.mzXML	1	23	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r2_BCOR_A_WT_IP	proteomic profiling by mass spectrometry	r2_BCOR_A_WT_IP.raw	1	24	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r2_BCOR_C_ITD_INPUT.mzXML	proteomic profiling by mass spectrometry	r2_BCOR_C_ITD_INPUT.mzXML	1	25	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r2_BCOR_C_ITD_INPUT	proteomic profiling by mass spectrometry	r2_BCOR_C_ITD_INPUT.raw	1	26	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r2_BCOR_C_ITD_IP.mzXML	proteomic profiling by mass spectrometry	r2_BCOR_C_ITD_IP.mzXML	1	27	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r2_BCOR_C_ITD_IP	proteomic profiling by mass spectrometry	r2_BCOR_C_ITD_IP.raw	1	28	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r2_BCOR_C_WT_INPUT.mzXML	proteomic profiling by mass spectrometry	r2_BCOR_C_WT_INPUT.mzXML	1	29	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r2_BCOR_C_WT_INPUT	proteomic profiling by mass spectrometry	r2_BCOR_C_WT_INPUT.raw	1	30	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r2_BCOR_C_WT_IP.mzXML	proteomic profiling by mass spectrometry	r2_BCOR_C_WT_IP.mzXML	1	31	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD064792-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	2 Å	not available	not available	r2_BCOR_C_WT_IP	proteomic profiling by mass spectrometry	r2_BCOR_C_WT_IP.raw	1	32	AC=MS:1002038;NT=label free sample	NT=LTQ Orbitrap Velos;AC=MS:1001742	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=formaldehyde;AC=XLMOD:02006	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
diff --git a/datasets/PXD064931/PXD064931.sdrf.tsv b/datasets/PXD064931/PXD064931.sdrf.tsv
new file mode 100644
index 000000000..6abbaf3a8
--- /dev/null
+++ b/datasets/PXD064931/PXD064931.sdrf.tsv
@@ -0,0 +1,6 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD064931-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	p26s_MS2_MS3	proteomic profiling by mass spectrometry	p26s_MS2_MS3.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064931-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	p26s_MS2_MS3_FAIMS405570charge3	proteomic profiling by mass spectrometry	p26s_MS2_MS3_FAIMS405570charge3.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064931-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	p26s_MS2_MS3_FAIMS405570charge3gs	proteomic profiling by mass spectrometry	p26s_MS2_MS3_FAIMS405570charge3gs.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064931-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	p26s_MS2_MS3_FAIMS405570charge4	proteomic profiling by mass spectrometry	p26s_MS2_MS3_FAIMS405570charge4.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064931-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	p26s_MS2_MS3_FAIMS506075	proteomic profiling by mass spectrometry	p26s_MS2_MS3_FAIMS506075.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD064932/PXD064932.sdrf.tsv b/datasets/PXD064932/PXD064932.sdrf.tsv
new file mode 100644
index 000000000..71c47a5d4
--- /dev/null
+++ b/datasets/PXD064932/PXD064932.sdrf.tsv
@@ -0,0 +1,6 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD064932-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	p26splussubstrate_MS2_MS3	proteomic profiling by mass spectrometry	p26splussubstrate_MS2_MS3.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064932-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	p26splussubstrate_MS2_MS3_FAIMS405570charge3	proteomic profiling by mass spectrometry	p26splussubstrate_MS2_MS3_FAIMS405570charge3.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064932-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	p26splussubstrate_MS2_MS3_FAIMS405570charge3gs	proteomic profiling by mass spectrometry	p26splussubstrate_MS2_MS3_FAIMS405570charge3gs.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064932-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	p26splussubstrate_MS2_MS3_FAIMS405570chrage4	proteomic profiling by mass spectrometry	p26splussubstrate_MS2_MS3_FAIMS405570chrage4.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD064932-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	26.4 Å	not available	not available	p26splussubstrate_MS2_MS3_FAIMS506075	proteomic profiling by mass spectrometry	p26splussubstrate_MS2_MS3_FAIMS506075.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	chemical cross-linking coupled with mass spectrometry proteomics	NT=DSSO;AC=XLMOD:02010;CL=yes;TA=K,S,T,Y,nterm;MH=54.01;ML=85.98	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD065410/PXD065410.sdrf.tsv b/datasets/PXD065410/PXD065410.sdrf.tsv
new file mode 100644
index 000000000..6bda9ea8b
--- /dev/null
+++ b/datasets/PXD065410/PXD065410.sdrf.tsv
@@ -0,0 +1,11 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[developmental stage]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD065410-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Light.rar	proteomic profiling by mass spectrometry	Light.rar	1	1	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD065410-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Light_HAPCN_1.rar	proteomic profiling by mass spectrometry	Light_HAPCN_1.rar	1	2	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD065410-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Light_HAPCN_2.rar	proteomic profiling by mass spectrometry	Light_HAPCN_2.rar	1	3	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD065410-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Light_omitPCN_1.rar	proteomic profiling by mass spectrometry	Light_omitPCN_1.rar	1	4	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD065410-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	Light_omitPCN_2.rar	proteomic profiling by mass spectrometry	Light_omitPCN_2.rar	1	5	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD065410-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ultrasound.rar	proteomic profiling by mass spectrometry	ultrasound.rar	1	6	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD065410-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ultrasound_HAPCN_1.rar	proteomic profiling by mass spectrometry	ultrasound_HAPCN_1.rar	1	7	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD065410-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ultrasound_HAPCN_2.rar	proteomic profiling by mass spectrometry	ultrasound_HAPCN_2.rar	1	8	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD065410-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ultrasound_omitPCN_1.rar	proteomic profiling by mass spectrometry	ultrasound_omitPCN_1.rar	1	9	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
+PXD065410-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	ultrasound_omitPCN_2.rar	proteomic profiling by mass spectrometry	ultrasound_omitPCN_2.rar	1	10	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
diff --git a/datasets/PXD065739/PXD065739.sdrf.tsv b/datasets/PXD065739/PXD065739.sdrf.tsv
new file mode 100644
index 000000000..493bad940
--- /dev/null
+++ b/datasets/PXD065739/PXD065739.sdrf.tsv
@@ -0,0 +1,17 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD065739-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	250131_ZCYT_AHR_10_HDMSe.zip	proteomic profiling by mass spectrometry	250131_ZCYT_AHR_10_HDMSe.raw.zip	1	1	AC=MS:1002038;NT=label free sample	NT=Synapt MS;AC=MS:1001782	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065739-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	250131_ZCYT_AHR_1_HDMSe.zip	proteomic profiling by mass spectrometry	250131_ZCYT_AHR_1_HDMSe.raw.zip	1	2	AC=MS:1002038;NT=label free sample	NT=Synapt MS;AC=MS:1001782	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065739-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	250131_ZCYT_AHR_2_HDMSe.zip	proteomic profiling by mass spectrometry	250131_ZCYT_AHR_2_HDMSe.raw.zip	1	3	AC=MS:1002038;NT=label free sample	NT=Synapt MS;AC=MS:1001782	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065739-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	250131_ZCYT_AHR_3_HDMSe.zip	proteomic profiling by mass spectrometry	250131_ZCYT_AHR_3_HDMSe.raw.zip	1	4	AC=MS:1002038;NT=label free sample	NT=Synapt MS;AC=MS:1001782	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065739-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	250131_ZCYT_AHR_4_HDMSe.zip	proteomic profiling by mass spectrometry	250131_ZCYT_AHR_4_HDMSe.raw.zip	1	5	AC=MS:1002038;NT=label free sample	NT=Synapt MS;AC=MS:1001782	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065739-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	250131_ZCYT_AHR_5_HDMSe.zip	proteomic profiling by mass spectrometry	250131_ZCYT_AHR_5_HDMSe.raw.zip	1	6	AC=MS:1002038;NT=label free sample	NT=Synapt MS;AC=MS:1001782	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065739-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	250131_ZCYT_AHR_6_HDMSe.zip	proteomic profiling by mass spectrometry	250131_ZCYT_AHR_6_HDMSe.raw.zip	1	7	AC=MS:1002038;NT=label free sample	NT=Synapt MS;AC=MS:1001782	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065739-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	250131_ZCYT_AHR_7_HDMSe.zip	proteomic profiling by mass spectrometry	250131_ZCYT_AHR_7_HDMSe.raw.zip	1	8	AC=MS:1002038;NT=label free sample	NT=Synapt MS;AC=MS:1001782	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065739-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	250131_ZCYT_AHR_8_HDMSe.zip	proteomic profiling by mass spectrometry	250131_ZCYT_AHR_8_HDMSe.raw.zip	1	9	AC=MS:1002038;NT=label free sample	NT=Synapt MS;AC=MS:1001782	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065739-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	250131_ZCYT_AHR_9_HDMSe.zip	proteomic profiling by mass spectrometry	250131_ZCYT_AHR_9_HDMSe.raw.zip	1	10	AC=MS:1002038;NT=label free sample	NT=Synapt MS;AC=MS:1001782	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065739-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	250606_ZCYT_AHR_FL2BirA_1.zip	proteomic profiling by mass spectrometry	250606_ZCYT_AHR_FL2BirA_1.raw.zip	1	11	AC=MS:1002038;NT=label free sample	NT=Synapt MS;AC=MS:1001782	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065739-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	250606_ZCYT_AHR_FL2BirA_2.zip	proteomic profiling by mass spectrometry	250606_ZCYT_AHR_FL2BirA_2.raw.zip	1	12	AC=MS:1002038;NT=label free sample	NT=Synapt MS;AC=MS:1001782	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065739-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	250606_ZCYT_AHR_FL2BirA_3.zip	proteomic profiling by mass spectrometry	250606_ZCYT_AHR_FL2BirA_3.raw.zip	1	13	AC=MS:1002038;NT=label free sample	NT=Synapt MS;AC=MS:1001782	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065739-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	250606_ZCYT_AHR_eGFPBirA_1_opt.zip	proteomic profiling by mass spectrometry	250606_ZCYT_AHR_eGFPBirA_1_opt.raw.zip	1	14	AC=MS:1002038;NT=label free sample	NT=Synapt MS;AC=MS:1001782	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065739-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	250606_ZCYT_AHR_eGFPBirA_2.zip	proteomic profiling by mass spectrometry	250606_ZCYT_AHR_eGFPBirA_2.raw.zip	1	15	AC=MS:1002038;NT=label free sample	NT=Synapt MS;AC=MS:1001782	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065739-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	250606_ZCYT_AHR_eGFPBirA_3.zip	proteomic profiling by mass spectrometry	250606_ZCYT_AHR_eGFPBirA_3.raw.zip	1	16	AC=MS:1002038;NT=label free sample	NT=Synapt MS;AC=MS:1001782	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD065858/PXD065858.sdrf.tsv b/datasets/PXD065858/PXD065858.sdrf.tsv
new file mode 100644
index 000000000..88a5b403b
--- /dev/null
+++ b/datasets/PXD065858/PXD065858.sdrf.tsv
@@ -0,0 +1,19 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD065858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250217_09_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A3_Inj1	proteomic profiling by mass spectrometry	E250217_09_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A3_Inj1.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250217_10_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A4_Inj1	proteomic profiling by mass spectrometry	E250217_10_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A4_Inj1.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250217_11_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A5_Inj1	proteomic profiling by mass spectrometry	E250217_11_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A5_Inj1.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250217_12_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A6_Inj1	proteomic profiling by mass spectrometry	E250217_12_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A6_Inj1.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250217_14_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A3_650to905mz_Inj2	proteomic profiling by mass spectrometry	E250217_14_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A3_650to905mz_Inj2.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250217_15_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A4_650to905mz_Inj2	proteomic profiling by mass spectrometry	E250217_15_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A4_650to905mz_Inj2.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250217_16_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A5_650to905mz_Inj2	proteomic profiling by mass spectrometry	E250217_16_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A5_650to905mz_Inj2.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250217_17_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A6_650to905mz_Inj2	proteomic profiling by mass spectrometry	E250217_17_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A6_650to905mz_Inj2.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250220_01_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A7_Inj1	proteomic profiling by mass spectrometry	E250220_01_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A7_Inj1.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250220_02_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A8_Inj1	proteomic profiling by mass spectrometry	E250220_02_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A8_Inj1.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250220_03_AMC_rpn1_IP_C1_IV_Dose_pepSEC_B8_Inj1	proteomic profiling by mass spectrometry	E250220_03_AMC_rpn1_IP_C1_IV_Dose_pepSEC_B8_Inj1.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250220_05_AMC_rpn1_IP_C1_IV_Dose_pepSEC_B7_Inj1	proteomic profiling by mass spectrometry	E250220_05_AMC_rpn1_IP_C1_IV_Dose_pepSEC_B7_Inj1.raw	1	12	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250220_06_AMC_rpn1_IP_C1_IV_Dose_pepSEC_B6_Inj1	proteomic profiling by mass spectrometry	E250220_06_AMC_rpn1_IP_C1_IV_Dose_pepSEC_B6_Inj1.raw	1	13	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250220_07_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A7_650to905mz_Inj2	proteomic profiling by mass spectrometry	E250220_07_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A7_650to905mz_Inj2.raw	1	14	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250220_09_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A8_650to905mz_Inj2	proteomic profiling by mass spectrometry	E250220_09_AMC_rpn1_IP_C1_IV_Dose_pepSEC_A8_650to905mz_Inj2.raw	1	15	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250220_10_AMC_rpn1_IP_C1_IV_Dose_pepSEC_B8_650to905mz_Inj2	proteomic profiling by mass spectrometry	E250220_10_AMC_rpn1_IP_C1_IV_Dose_pepSEC_B8_650to905mz_Inj2.raw	1	16	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250220_11_AMC_rpn1_IP_C1_IV_Dose_pepSEC_B7_650to905mz_Inj2	proteomic profiling by mass spectrometry	E250220_11_AMC_rpn1_IP_C1_IV_Dose_pepSEC_B7_650to905mz_Inj2.raw	1	17	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065858-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250220_12_AMC_rpn1_IP_C1_IV_Dose_pepSEC_B6_650to905mz_Inj2	proteomic profiling by mass spectrometry	E250220_12_AMC_rpn1_IP_C1_IV_Dose_pepSEC_B6_650to905mz_Inj2.raw	1	18	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD065859/PXD065859.sdrf.tsv b/datasets/PXD065859/PXD065859.sdrf.tsv
new file mode 100644
index 000000000..53fb4e71e
--- /dev/null
+++ b/datasets/PXD065859/PXD065859.sdrf.tsv
@@ -0,0 +1,10 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD065859-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250317_01_AMC_HSA_C1_Enriched_Uncleaved_pepSEC_A3_Inj1	proteomic profiling by mass spectrometry	E250317_01_AMC_HSA_C1_Enriched_Uncleaved_pepSEC_A3_Inj1.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065859-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250317_02_AMC_HSA_C1_Enriched_Uncleaved_pepSEC_A4_Inj1	proteomic profiling by mass spectrometry	E250317_02_AMC_HSA_C1_Enriched_Uncleaved_pepSEC_A4_Inj1.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065859-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250317_03_AMC_HSA_C1_Enriched_Uncleaved_pepSEC_A5_Inj1	proteomic profiling by mass spectrometry	E250317_03_AMC_HSA_C1_Enriched_Uncleaved_pepSEC_A5_Inj1.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065859-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250317_05_AMC_HSA_C1_Enriched_Uncleaved_pepSEC_A6_Inj1	proteomic profiling by mass spectrometry	E250317_05_AMC_HSA_C1_Enriched_Uncleaved_pepSEC_A6_Inj1.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065859-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250317_06_AMC_HSA_C1_Enriched_Uncleaved_pepSEC_A7_Inj1	proteomic profiling by mass spectrometry	E250317_06_AMC_HSA_C1_Enriched_Uncleaved_pepSEC_A7_Inj1.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065859-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250317_07_AMC_HSA_C1_Enriched_Uncleaved_pepSEC_A8_Inj1	proteomic profiling by mass spectrometry	E250317_07_AMC_HSA_C1_Enriched_Uncleaved_pepSEC_A8_Inj1.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065859-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250317_09_AMC_HSA_C1_Enriched_Uncleaved_pepSEC_B8_Inj1	proteomic profiling by mass spectrometry	E250317_09_AMC_HSA_C1_Enriched_Uncleaved_pepSEC_B8_Inj1.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065859-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250317_10_AMC_HSA_C1_Enriched_Uncleaved_pepSEC_B7_Inj1	proteomic profiling by mass spectrometry	E250317_10_AMC_HSA_C1_Enriched_Uncleaved_pepSEC_B7_Inj1.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065859-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250317_11_AMC_HSA_C1_Enriched_Uncleaved_pepSEC_B6_Inj1	proteomic profiling by mass spectrometry	E250317_11_AMC_HSA_C1_Enriched_Uncleaved_pepSEC_B6_Inj1.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD065869/PXD065869.sdrf.tsv b/datasets/PXD065869/PXD065869.sdrf.tsv
new file mode 100644
index 000000000..d030596cd
--- /dev/null
+++ b/datasets/PXD065869/PXD065869.sdrf.tsv
@@ -0,0 +1,25 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240620_13_AMC_HSA_C1_DSSO_HCD_Energies_Inj1	proteomic profiling by mass spectrometry	E240620_13_AMC_HSA_C1_DSSO_HCD_Energies_Inj1.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240620_14_AMC_HSA_DME_DSSO_HCD_Energies_Inj1	proteomic profiling by mass spectrometry	E240620_14_AMC_HSA_DME_DSSO_HCD_Energies_Inj1.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240620_16_AMC_HSA_DPH_DSSO_HCD_Energies_Inj1	proteomic profiling by mass spectrometry	E240620_16_AMC_HSA_DPH_DSSO_HCD_Energies_Inj1.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240620_17_AMC_HSA_NoXL_DSSO_HCD_Energies_Inj1	proteomic profiling by mass spectrometry	E240620_17_AMC_HSA_NoXL_DSSO_HCD_Energies_Inj1.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240620_21_AMC_HSA_DET_122630_HCD_Energies_Inj1	proteomic profiling by mass spectrometry	E240620_21_AMC_HSA_DET_122630_HCD_Energies_Inj1.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240620_24_AMC_HSA_C1_152630_HCD_Energies_Inj1	proteomic profiling by mass spectrometry	E240620_24_AMC_HSA_C1_152630_HCD_Energies_Inj1.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240620_25_AMC_HSA_DME_152630_HCD_Energies_Inj1	proteomic profiling by mass spectrometry	E240620_25_AMC_HSA_DME_152630_HCD_Energies_Inj1.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240620_26_AMC_HSA_DET_152630_HCD_Energies_Inj1	proteomic profiling by mass spectrometry	E240620_26_AMC_HSA_DET_152630_HCD_Energies_Inj1.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240620_27_AMC_HSA_DPH_152630_HCD_Energies_Inj1	proteomic profiling by mass spectrometry	E240620_27_AMC_HSA_DPH_152630_HCD_Energies_Inj1.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240620_30_AMC_HSA_DME_212630_HCD_Energies_Inj1	proteomic profiling by mass spectrometry	E240620_30_AMC_HSA_DME_212630_HCD_Energies_Inj1.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240620_31_AMC_HSA_DET_212630_HCD_Energies_Inj1	proteomic profiling by mass spectrometry	E240620_31_AMC_HSA_DET_212630_HCD_Energies_Inj1.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240620_32_AMC_HSA_DPH_212630_HCD_Energies_Inj1	proteomic profiling by mass spectrometry	E240620_32_AMC_HSA_DPH_212630_HCD_Energies_Inj1.raw	1	12	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240620_36_AMC_HSA_DET_92630_HCD_Energies_Inj1	proteomic profiling by mass spectrometry	E240620_36_AMC_HSA_DET_92630_HCD_Energies_Inj1.raw	1	13	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240620_37_AMC_HSA_DPH_92630_HCD_Energies_Inj1	proteomic profiling by mass spectrometry	E240620_37_AMC_HSA_DPH_92630_HCD_Energies_Inj1.raw	1	14	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240715_03_AMC_HSA_DME_IV_DSSO_HCD_Energies_Inj1	proteomic profiling by mass spectrometry	E240715_03_AMC_HSA_DME_IV_DSSO_HCD_Energies_Inj1.raw	1	15	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240715_06_AMC_HSA_DPH_IV_DSSO_HCD_Energies_Inj1	proteomic profiling by mass spectrometry	E240715_06_AMC_HSA_DPH_IV_DSSO_HCD_Energies_Inj1.raw	1	16	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240715_12_AMC_HSA_DPH_IV_92630_HCD_Energies_Inj2	proteomic profiling by mass spectrometry	E240715_12_AMC_HSA_DPH_IV_92630_HCD_Energies_Inj2.raw	1	17	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240715_20_AMC_HSA_DME_IV_152630_HCD_Energies_Inj4	proteomic profiling by mass spectrometry	E240715_20_AMC_HSA_DME_IV_152630_HCD_Energies_Inj4.raw	1	18	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240715_22_AMC_HSA_DPH_IV_152630_HCD_Energies_Inj4	proteomic profiling by mass spectrometry	E240715_22_AMC_HSA_DPH_IV_152630_HCD_Energies_Inj4.raw	1	19	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240715_25_AMC_HSA_DME_IV_212630_HCD_Energies_Inj5	proteomic profiling by mass spectrometry	E240715_25_AMC_HSA_DME_IV_212630_HCD_Energies_Inj5.raw	1	20	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240715_26_AMC_HSA_DET_IV_212630_HCD_Energies_Inj5	proteomic profiling by mass spectrometry	E240715_26_AMC_HSA_DET_IV_212630_HCD_Energies_Inj5.raw	1	21	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240715_27_AMC_HSA_DPH_IV_212630_HCD_Energies_Inj5	proteomic profiling by mass spectrometry	E240715_27_AMC_HSA_DPH_IV_212630_HCD_Energies_Inj5.raw	1	22	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240715_29_AMC_HSA_C1_IV_242630_HCD_Energies_Inj6	proteomic profiling by mass spectrometry	E240715_29_AMC_HSA_C1_IV_242630_HCD_Energies_Inj6.raw	1	23	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065869-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240715_31_AMC_HSA_DET_IV_242630_HCD_Energies_Inj6	proteomic profiling by mass spectrometry	E240715_31_AMC_HSA_DET_IV_242630_HCD_Energies_Inj6.raw	1	24	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD065870/PXD065870.sdrf.tsv b/datasets/PXD065870/PXD065870.sdrf.tsv
new file mode 100644
index 000000000..4dc297798
--- /dev/null
+++ b/datasets/PXD065870/PXD065870.sdrf.tsv
@@ -0,0 +1,12 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD065870-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240906_01_AMC_HSA_340B_142_IV_pepSEC_A5_Inj1	proteomic profiling by mass spectrometry	E240906_01_AMC_HSA_340B_142_IV_pepSEC_A5_Inj1.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065870-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240906_02_AMC_HSA_340B_142_IV_pepSEC_A6_Inj1	proteomic profiling by mass spectrometry	E240906_02_AMC_HSA_340B_142_IV_pepSEC_A6_Inj1.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065870-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240906_03_AMC_HSA_340B_142_IV_pepSEC_A7_Inj1	proteomic profiling by mass spectrometry	E240906_03_AMC_HSA_340B_142_IV_pepSEC_A7_Inj1.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065870-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240906_05_AMC_HSA_340B_142_IV_pepSEC_A8_Inj1	proteomic profiling by mass spectrometry	E240906_05_AMC_HSA_340B_142_IV_pepSEC_A8_Inj1.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065870-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240906_12_AMC_HSA_340B_142_IV_pepSEC_A5_FAIMS_-55CV_Inj2	proteomic profiling by mass spectrometry	E240906_12_AMC_HSA_340B_142_IV_pepSEC_A5_FAIMS_-55CV_Inj2.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065870-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240906_13_AMC_HSA_340B_142_IV_pepSEC_A6_FAIMS_-55CV_Inj2	proteomic profiling by mass spectrometry	E240906_13_AMC_HSA_340B_142_IV_pepSEC_A6_FAIMS_-55CV_Inj2.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065870-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240906_14_AMC_HSA_340B_142_IV_pepSEC_A7_FAIMS_-55CV_Inj2	proteomic profiling by mass spectrometry	E240906_14_AMC_HSA_340B_142_IV_pepSEC_A7_FAIMS_-55CV_Inj2.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065870-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240906_16_AMC_HSA_340B_142_IV_pepSEC_A8_FAIMS_-55CV_Inj2	proteomic profiling by mass spectrometry	E240906_16_AMC_HSA_340B_142_IV_pepSEC_A8_FAIMS_-55CV_Inj2.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065870-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240906_17_AMC_HSA_340B_142_IV_pepSEC_B8_FAIMS_-55CV_Inj2	proteomic profiling by mass spectrometry	E240906_17_AMC_HSA_340B_142_IV_pepSEC_B8_FAIMS_-55CV_Inj2.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065870-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240906_18_AMC_HSA_340B_142_IV_pepSEC_B7_FAIMS_-55CV_Inj2	proteomic profiling by mass spectrometry	E240906_18_AMC_HSA_340B_142_IV_pepSEC_B7_FAIMS_-55CV_Inj2.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065870-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E240906_19_AMC_HSA_340B_142_IV_pepSEC_B6_FAIMS_-55CV_Inj2	proteomic profiling by mass spectrometry	E240906_19_AMC_HSA_340B_142_IV_pepSEC_B6_FAIMS_-55CV_Inj2.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD065871/PXD065871.sdrf.tsv b/datasets/PXD065871/PXD065871.sdrf.tsv
new file mode 100644
index 000000000..e54524e82
--- /dev/null
+++ b/datasets/PXD065871/PXD065871.sdrf.tsv
@@ -0,0 +1,19 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD065871-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250328_01_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A3_Inj1	proteomic profiling by mass spectrometry	E250328_01_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A3_Inj1.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065871-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250328_02_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A4_Inj1	proteomic profiling by mass spectrometry	E250328_02_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A4_Inj1.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065871-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250328_03_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A5_Inj1	proteomic profiling by mass spectrometry	E250328_03_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A5_Inj1.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065871-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250328_05_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A6_Inj1	proteomic profiling by mass spectrometry	E250328_05_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A6_Inj1.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065871-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250328_06_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A7_Inj1	proteomic profiling by mass spectrometry	E250328_06_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A7_Inj1.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065871-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250328_07_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A8_Inj1	proteomic profiling by mass spectrometry	E250328_07_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A8_Inj1.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065871-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250328_09_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_B8_Inj1	proteomic profiling by mass spectrometry	E250328_09_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_B8_Inj1.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065871-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250328_10_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_B7_Inj1	proteomic profiling by mass spectrometry	E250328_10_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_B7_Inj1.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065871-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250328_11_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_B6_Inj1	proteomic profiling by mass spectrometry	E250328_11_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_B6_Inj1.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065871-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250328_13_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A3_650to905mz_Inj2	proteomic profiling by mass spectrometry	E250328_13_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A3_650to905mz_Inj2.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065871-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250328_14_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A4_650to905mz_Inj2	proteomic profiling by mass spectrometry	E250328_14_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A4_650to905mz_Inj2.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065871-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250328_15_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A5_650to905mz_Inj2	proteomic profiling by mass spectrometry	E250328_15_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A5_650to905mz_Inj2.raw	1	12	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065871-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250328_17_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A6_650to905mz_Inj2	proteomic profiling by mass spectrometry	E250328_17_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A6_650to905mz_Inj2.raw	1	13	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065871-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250328_18_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A7_650to905mz_Inj2	proteomic profiling by mass spectrometry	E250328_18_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A7_650to905mz_Inj2.raw	1	14	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065871-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250328_19_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A8_650to905mz_Inj2	proteomic profiling by mass spectrometry	E250328_19_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_A8_650to905mz_Inj2.raw	1	15	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065871-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250328_21_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_B8_650to905mz_Inj2	proteomic profiling by mass spectrometry	E250328_21_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_B8_650to905mz_Inj2.raw	1	16	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065871-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250328_22_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_B7_650to905mz_Inj2	proteomic profiling by mass spectrometry	E250328_22_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_B7_650to905mz_Inj2.raw	1	17	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD065871-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	E250328_23_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_B6_650to905mz_Inj2	proteomic profiling by mass spectrometry	E250328_23_AMC_rpn1_IP_VDB_IV_Dose_pepSEC_B6_650to905mz_Inj2.raw	1	18	AC=MS:1002038;NT=label free sample	NT=Orbitrap Eclipse;AC=MS:1003029	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=DSBSO;AC=XLMOD:02155;CL=yes;TA=K,S,T,Y,nterm	not available	not available	re-addition	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD066067/PXD066067.sdrf.tsv b/datasets/PXD066067/PXD066067.sdrf.tsv
new file mode 100644
index 000000000..5a541afe9
--- /dev/null
+++ b/datasets/PXD066067/PXD066067.sdrf.tsv
@@ -0,0 +1,2 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[developmental stage]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD066067-sample	mus musculus	not applicable	not applicable	not applicable	not available	1	synthetic	reference	not available	not available	not available	not available	raw_data.zip	proteomic profiling by mass spectrometry	raw_data.zip	1	1	AC=MS:1002038;NT=label free sample	NT=timsTOF Pro 2;AC=MS:1003230	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=vertebrates;VV=v1.1.0
diff --git a/datasets/PXD066251/PXD066251.sdrf.tsv b/datasets/PXD066251/PXD066251.sdrf.tsv
new file mode 100644
index 000000000..f1aeff97a
--- /dev/null
+++ b/datasets/PXD066251/PXD066251.sdrf.tsv
@@ -0,0 +1,4 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD066251-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	xlink_652_16_1	proteomic profiling by mass spectrometry	xlink_652_16_1.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD066251-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	xlink_652_16_2	proteomic profiling by mass spectrometry	xlink_652_16_2.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD066251-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	xlink_652_16_3	proteomic profiling by mass spectrometry	xlink_652_16_3.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Exploris 480;AC=MS:1003028	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD066655/PXD066655.sdrf.tsv b/datasets/PXD066655/PXD066655.sdrf.tsv
new file mode 100644
index 000000000..b83a32dd6
--- /dev/null
+++ b/datasets/PXD066655/PXD066655.sdrf.tsv
@@ -0,0 +1,13 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD066655-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	RS48_C1	proteomic profiling by mass spectrometry	RS48_C1.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF-X;AC=MS:1002877	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD066655-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	RS48_C2	proteomic profiling by mass spectrometry	RS48_C2.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF-X;AC=MS:1002877	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD066655-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	RS48_C3	proteomic profiling by mass spectrometry	RS48_C3.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF-X;AC=MS:1002877	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD066655-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	RS48_D1	proteomic profiling by mass spectrometry	RS48_D1.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF-X;AC=MS:1002877	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD066655-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	RS48_D2	proteomic profiling by mass spectrometry	RS48_D2.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF-X;AC=MS:1002877	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD066655-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	RS48_D3	proteomic profiling by mass spectrometry	RS48_D3.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF-X;AC=MS:1002877	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD066655-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	RS48_F1	proteomic profiling by mass spectrometry	RS48_F1.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF-X;AC=MS:1002877	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD066655-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	RS48_F2	proteomic profiling by mass spectrometry	RS48_F2.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF-X;AC=MS:1002877	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD066655-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	RS48_F3	proteomic profiling by mass spectrometry	RS48_F3.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF-X;AC=MS:1002877	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD066655-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	SPD2_1	proteomic profiling by mass spectrometry	SPD2_1.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF-X;AC=MS:1002877	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD066655-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	SPD2_2	proteomic profiling by mass spectrometry	SPD2_2.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF-X;AC=MS:1002877	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD066655-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	SPD2_3	proteomic profiling by mass spectrometry	SPD2_3.raw	1	12	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF-X;AC=MS:1002877	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=unknown crosslinker;AC=XLMOD:00000	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD069219/PXD069219.sdrf.tsv b/datasets/PXD069219/PXD069219.sdrf.tsv
new file mode 100644
index 000000000..b509f2e6f
--- /dev/null
+++ b/datasets/PXD069219/PXD069219.sdrf.tsv
@@ -0,0 +1,3 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD069219-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	MS221115_MH_AR_AER_B2_35	proteomic profiling by mass spectrometry	MS221115_MH_AR_AER_B2_35.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069219-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	MS221115_MH_AR_AER_B2_45	proteomic profiling by mass spectrometry	MS221115_MH_AR_AER_B2_45.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion Lumos;AC=MS:1002732	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD069360/PXD069360.sdrf.tsv b/datasets/PXD069360/PXD069360.sdrf.tsv
new file mode 100644
index 000000000..7e0e2868a
--- /dev/null
+++ b/datasets/PXD069360/PXD069360.sdrf.tsv
@@ -0,0 +1,3 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD069360-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	24NP13410001	proteomic profiling by mass spectrometry	24NP13410001.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069360-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	24NP13410002	proteomic profiling by mass spectrometry	24NP13410002.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Q Exactive HF;AC=MS:1002523	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=TurboID;AC=XLMOD:02251	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
diff --git a/datasets/PXD069844/PXD069844.sdrf.tsv b/datasets/PXD069844/PXD069844.sdrf.tsv
new file mode 100644
index 000000000..b781899d9
--- /dev/null
+++ b/datasets/PXD069844/PXD069844.sdrf.tsv
@@ -0,0 +1,34 @@
+source name	characteristics[organism]	characteristics[organism part]	characteristics[cell type]	characteristics[disease]	characteristics[age]	characteristics[sex]	characteristics[biological replicate]	characteristics[material type]	characteristics[sample type]	characteristics[enrichment process]	characteristics[crosslink distance]	characteristics[crosslinking reaction time]	characteristics[crosslinking temperature]	assay name	technology type	comment[data file]	comment[technical replicate]	comment[fraction identifier]	comment[label]	comment[instrument]	comment[proteomics data acquisition method]	comment[cleavage agent details]	comment[cleavage agent details]	comment[modification parameters]	comment[modification parameters]	comment[dissociation method]	comment[collision energy]	comment[precursor mass tolerance]	comment[fragment mass tolerance]	comment[fractionation method]	comment[chemical cross-linking coupled with ms]	comment[cross-linker]	comment[crosslink enrichment method]	comment[crosslinker concentration]	comment[quenching reagent]	comment[reduction reagent]	comment[alkylation reagent]	comment[sdrf version]	comment[sdrf template]	comment[sdrf template]	comment[sdrf template]
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	CDC42_WT_1	proteomic profiling by mass spectrometry	CDC42_WT_1.raw	1	1	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	CDC42_WT_2	proteomic profiling by mass spectrometry	CDC42_WT_2.raw	1	2	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	CDC42_WT_3	proteomic profiling by mass spectrometry	CDC42_WT_3.raw	1	3	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	GFP_1	proteomic profiling by mass spectrometry	GFP_1.raw	1	4	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	GFP_2	proteomic profiling by mass spectrometry	GFP_2.raw	1	5	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	GFP_3	proteomic profiling by mass spectrometry	GFP_3.raw	1	6	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PD_CDC42G15A-1	proteomic profiling by mass spectrometry	PD_CDC42G15A-1.raw	1	7	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PD_CDC42G15A-2	proteomic profiling by mass spectrometry	PD_CDC42G15A-2.raw	1	8	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PD_CDC42G15A-3	proteomic profiling by mass spectrometry	PD_CDC42G15A-3.raw	1	9	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PD_CTL-1	proteomic profiling by mass spectrometry	PD_CTL-1.raw	1	10	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PD_CTL-2	proteomic profiling by mass spectrometry	PD_CTL-2.raw	1	11	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	PD_CTL-3	proteomic profiling by mass spectrometry	PD_CTL-3.raw	1	12	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	Rac_G15A_1	proteomic profiling by mass spectrometry	Rac_G15A_1.raw	1	13	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	Rac_G15A_2	proteomic profiling by mass spectrometry	Rac_G15A_2.raw	1	14	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	Rac_G15A_3	proteomic profiling by mass spectrometry	Rac_G15A_3.raw	1	15	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	Rac_WT_1	proteomic profiling by mass spectrometry	Rac_WT_1.raw	1	16	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	Rac_WT_2	proteomic profiling by mass spectrometry	Rac_WT_2.raw	1	17	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	Rac_WT_3	proteomic profiling by mass spectrometry	Rac_WT_3.raw	1	18	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	Rho_A_G17A_1	proteomic profiling by mass spectrometry	Rho_A_G17A_1.raw	1	19	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	Rho_A_G17A_2	proteomic profiling by mass spectrometry	Rho_A_G17A_2.raw	1	20	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	Rho_A_G17A_3	proteomic profiling by mass spectrometry	Rho_A_G17A_3.raw	1	21	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	Rho_A_WT_1	proteomic profiling by mass spectrometry	Rho_A_WT_1.raw	1	22	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	Rho_A_WT_2	proteomic profiling by mass spectrometry	Rho_A_WT_2.raw	1	23	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	Rho_A_WT_3	proteomic profiling by mass spectrometry	Rho_A_WT_3.raw	1	24	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	aRho_A_1	proteomic profiling by mass spectrometry	aRho_A_1.raw	1	25	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	aRho_A_2	proteomic profiling by mass spectrometry	aRho_A_2.raw	1	26	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	aRho_A_3	proteomic profiling by mass spectrometry	aRho_A_3.raw	1	27	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	active_CDC42_1	proteomic profiling by mass spectrometry	active_CDC42_1.raw	1	28	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	active_CDC42_2	proteomic profiling by mass spectrometry	active_CDC42_2.raw	1	29	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	active_CDC42_3	proteomic profiling by mass spectrometry	active_CDC42_3.raw	1	30	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	active_Rac_1	proteomic profiling by mass spectrometry	active_Rac_1.raw	1	31	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	active_Rac_2	proteomic profiling by mass spectrometry	active_Rac_2.raw	1	32	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0
+PXD069844-sample	homo sapiens	not applicable	not applicable	not applicable	not available	not applicable	1	synthetic	reference	not available	not available	not available	not available	active_Rac_3	proteomic profiling by mass spectrometry	active_Rac_3.raw	1	33	AC=MS:1002038;NT=label free sample	NT=Orbitrap Fusion;AC=MS:1002416	NT=Data-dependent acquisition;AC=PRIDE:0000449	NT=Trypsin;AC=MS:1001251	NT=Lys-C;AC=MS:1001309	NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed	NT=Oxidation;AC=UNIMOD:35;TA=M;MT=Variable	NT=HCD;AC=PRIDE:0000590	not available	not available	not available	not available	cross-linking mass spectrometry	NT=BioID;AC=XLMOD:02250	not available	not available	not available	not available	not available	v1.1.0	NT=ms-proteomics;VV=v1.1.0	NT=crosslinking;VV=v1.0.0	NT=human;VV=v1.1.0