Merge pull request #15 from bigbio/copilot/dev-add-ci-cd-workflow

Add GitHub Actions CI/CD workflow for R ≥ 4.0 with badge

Author: enriquea

.Rbuildignore

@@ -1,2 +1,3 @@
 ^.*\.Rproj$
 ^\.Rproj\.user$
+^\.github$

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,54 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master, dev]
+  pull_request:
+    branches: [main, master, dev]
+
+name: R-CMD-check
+
+permissions: read-all
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: ubuntu-latest, r: '4.0'}
+          - {os: ubuntu-latest, r: '4.1'}
+          - {os: ubuntu-latest, r: '4.2'}
+          - {os: ubuntu-latest, r: '4.3'}
+          - {os: ubuntu-latest, r: '4.4'}
+          - {os: ubuntu-latest, r: 'release'}
+          - {os: macOS-latest, r: 'release'}
+          - {os: windows-latest, r: 'release'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'

DESCRIPTION

@@ -13,7 +13,12 @@ License: Apache 2
 Imports:
     lsr,
     plyr
-Depends:caret, kernlab, ggplot2, corrplot
+Depends:
+    R (>= 4.0),
+    caret,
+    kernlab,
+    ggplot2,
+    corrplot
 Suggests:
     testthat,
     BiocStyle,

README.md

@@ -1,3 +1,4 @@
+[![R-CMD-check](https://github.com/bigbio/pIR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/bigbio/pIR/actions/workflows/R-CMD-check.yaml)
 [![License](https://img.shields.io/badge/license-Apache%202-blue.svg)](https://www.apache.org/licenses/LICENSE-2.0)
 
 # [pIR](https://github.com/bigbio/pIR)

tests/testthat.R

@@ -1,4 +1,4 @@
 library(testthat)
 library(pIR)
-test_check("testthat")
+test_check("pIR")